EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000006265 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 1703 bases
Position: chrUn_random:6227653-6229355
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000009018	zf-CCCH	PF00642.24	6e-21	1	2
ENSTNIP00000009018	zf-CCCH	PF00642.24	6e-21	2	2
ENSTNIP00000009018	zf-CCHC	PF00098.23	3.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000009189	-	792	-	ENSTNIP00000009018	263 (aa)	-	H3CL89

Gene Model

Click here to download ENSTNIG00000006265's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000006265's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000006265	cpsf4	62	34.545	ENSTNIG00000004750	-	81	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000006265	cpsf4	100	81.481	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSTNIG00000006265	cpsf4	67	81.356	ENSAPOG00000004921	cpsf4	100	81.356	Acanthochromis_polyacanthus
ENSTNIG00000006265	cpsf4	100	81.481	ENSAMEG00000006252	CPSF4	100	80.000	Ailuropoda_melanoleuca
ENSTNIG00000006265	cpsf4	100	84.791	ENSACIG00000009248	cpsf4	100	84.791	Amphilophus_citrinellus
ENSTNIG00000006265	cpsf4	100	89.434	ENSAOCG00000019616	cpsf4	100	89.434	Amphiprion_ocellaris
ENSTNIG00000006265	cpsf4	100	89.434	ENSAPEG00000011679	cpsf4	100	89.434	Amphiprion_percula
ENSTNIG00000006265	cpsf4	100	90.262	ENSATEG00000007010	cpsf4	100	89.513	Anabas_testudineus
ENSTNIG00000006265	cpsf4	100	79.705	ENSACAG00000012941	CPSF4	89	78.229	Anolis_carolinensis
ENSTNIG00000006265	cpsf4	100	81.481	ENSANAG00000021360	CPSF4	100	80.000	Aotus_nancymaae
ENSTNIG00000006265	cpsf4	100	89.434	ENSACLG00000010374	cpsf4	100	89.057	Astatotilapia_calliptera
ENSTNIG00000006265	cpsf4	100	82.593	ENSAMXG00000031647	cpsf4	100	84.074	Astyanax_mexicanus
ENSTNIG00000006265	cpsf4	100	79.468	ENSBTAG00000002090	CPSF4	100	78.327	Bos_taurus
ENSTNIG00000006265	cpsf4	100	81.481	ENSCJAG00000015826	CPSF4	100	80.000	Callithrix_jacchus
ENSTNIG00000006265	cpsf4	100	81.481	ENSCAFG00000015036	CPSF4	99	86.228	Canis_familiaris
ENSTNIG00000006265	cpsf4	100	76.667	ENSCAFG00020014462	CPSF4	100	75.185	Canis_lupus_dingo
ENSTNIG00000006265	cpsf4	100	81.111	ENSCHIG00000014313	CPSF4	100	79.630	Capra_hircus
ENSTNIG00000006265	cpsf4	100	71.591	ENSTSYG00000014604	-	100	70.833	Carlito_syrichta
ENSTNIG00000006265	cpsf4	100	79.087	ENSTSYG00000005712	-	100	78.327	Carlito_syrichta
ENSTNIG00000006265	cpsf4	89	73.617	ENSTSYG00000008195	-	99	72.951	Carlito_syrichta
ENSTNIG00000006265	cpsf4	81	80.090	ENSCAPG00000013881	CPSF4	88	77.578	Cavia_aperea
ENSTNIG00000006265	cpsf4	100	79.468	ENSCPOG00000001783	CPSF4	100	78.707	Cavia_porcellus
ENSTNIG00000006265	cpsf4	100	81.481	ENSCCAG00000028291	CPSF4	100	80.000	Cebus_capucinus
ENSTNIG00000006265	cpsf4	100	81.481	ENSCATG00000038440	CPSF4	100	80.000	Cercocebus_atys
ENSTNIG00000006265	cpsf4	100	81.852	ENSCLAG00000007050	CPSF4	100	80.370	Chinchilla_lanigera
ENSTNIG00000006265	cpsf4	100	81.481	ENSCSAG00000017795	CPSF4	100	80.000	Chlorocebus_sabaeus
ENSTNIG00000006265	cpsf4	63	77.108	ENSCPBG00000010269	-	100	77.108	Chrysemys_picta_bellii
ENSTNIG00000006265	cpsf4	80	81.651	ENSCPBG00000020869	CPSF4	100	79.817	Chrysemys_picta_bellii
ENSTNIG00000006265	cpsf4	97	56.250	ENSCING00000021080	-	97	56.641	Ciona_intestinalis
ENSTNIG00000006265	cpsf4	96	54.064	ENSCSAVG00000011469	-	97	52.669	Ciona_savignyi
ENSTNIG00000006265	cpsf4	100	81.481	ENSCANG00000019384	CPSF4	100	80.000	Colobus_angolensis_palliatus
ENSTNIG00000006265	cpsf4	100	79.468	ENSCGRG00001024184	Cpsf4	100	78.707	Cricetulus_griseus_chok1gshd
ENSTNIG00000006265	cpsf4	100	81.481	ENSCGRG00000013892	Cpsf4	100	80.000	Cricetulus_griseus_crigri
ENSTNIG00000006265	cpsf4	100	87.547	ENSCSEG00000019055	cpsf4	100	87.547	Cynoglossus_semilaevis
ENSTNIG00000006265	cpsf4	100	87.925	ENSCVAG00000016528	cpsf4	100	87.925	Cyprinodon_variegatus
ENSTNIG00000006265	cpsf4	100	82.288	ENSDARG00000020217	cpsf4	100	82.288	Danio_rerio
ENSTNIG00000006265	cpsf4	100	81.481	ENSDNOG00000006344	CPSF4	100	80.000	Dasypus_novemcinctus
ENSTNIG00000006265	cpsf4	80	80.275	ENSDORG00000000742	Cpsf4	100	78.440	Dipodomys_ordii
ENSTNIG00000006265	cpsf4	100	54.110	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSTNIG00000006265	cpsf4	71	92.727	ENSETEG00000002608	CPSF4	70	92.727	Echinops_telfairi
ENSTNIG00000006265	cpsf4	99	66.920	ENSEBUG00000012552	cpsf4	98	67.050	Eptatretus_burgeri
ENSTNIG00000006265	cpsf4	100	79.468	ENSEASG00005002487	CPSF4	100	78.707	Equus_asinus_asinus
ENSTNIG00000006265	cpsf4	100	81.481	ENSECAG00000007525	CPSF4	100	80.000	Equus_caballus
ENSTNIG00000006265	cpsf4	62	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSTNIG00000006265	cpsf4	100	83.456	ENSELUG00000011481	cpsf4	100	83.088	Esox_lucius
ENSTNIG00000006265	cpsf4	100	81.481	ENSFCAG00000015070	CPSF4	100	80.000	Felis_catus
ENSTNIG00000006265	cpsf4	63	54.651	ENSFALG00000012906	-	100	54.651	Ficedula_albicollis
ENSTNIG00000006265	cpsf4	100	77.947	ENSFALG00000013799	CPSF4	100	77.947	Ficedula_albicollis
ENSTNIG00000006265	cpsf4	90	80.328	ENSFDAG00000014092	CPSF4	100	78.689	Fukomys_damarensis
ENSTNIG00000006265	cpsf4	100	88.679	ENSFHEG00000010880	cpsf4	100	88.679	Fundulus_heteroclitus
ENSTNIG00000006265	cpsf4	100	80.292	ENSGMOG00000002330	cpsf4	100	79.775	Gadus_morhua
ENSTNIG00000006265	cpsf4	100	77.947	ENSGALG00000004714	CPSF4	100	77.947	Gallus_gallus
ENSTNIG00000006265	cpsf4	99	36.667	ENSGALG00000004441	-	98	36.667	Gallus_gallus
ENSTNIG00000006265	cpsf4	100	87.547	ENSGAFG00000010580	cpsf4	100	87.547	Gambusia_affinis
ENSTNIG00000006265	cpsf4	100	85.448	ENSGACG00000007792	cpsf4	100	84.151	Gasterosteus_aculeatus
ENSTNIG00000006265	cpsf4	69	74.176	ENSGAGG00000020579	-	100	74.176	Gopherus_agassizii
ENSTNIG00000006265	cpsf4	100	81.919	ENSGAGG00000021835	CPSF4	100	80.443	Gopherus_agassizii
ENSTNIG00000006265	cpsf4	100	81.481	ENSGGOG00000015131	CPSF4	100	80.000	Gorilla_gorilla
ENSTNIG00000006265	cpsf4	100	89.434	ENSHBUG00000013699	cpsf4	100	89.057	Haplochromis_burtoni
ENSTNIG00000006265	cpsf4	100	81.181	ENSHGLG00000017150	CPSF4	100	79.705	Heterocephalus_glaber_female
ENSTNIG00000006265	cpsf4	87	78.814	ENSHGLG00100009215	-	100	77.119	Heterocephalus_glaber_male
ENSTNIG00000006265	cpsf4	67	64.407	ENSHGLG00100017302	-	93	62.944	Heterocephalus_glaber_male
ENSTNIG00000006265	cpsf4	100	87.218	ENSHCOG00000004397	cpsf4	100	86.466	Hippocampus_comes
ENSTNIG00000006265	cpsf4	100	81.550	ENSIPUG00000017147	cpsf4	100	82.657	Ictalurus_punctatus
ENSTNIG00000006265	cpsf4	100	81.481	ENSSTOG00000001688	CPSF4	100	80.000	Ictidomys_tridecemlineatus
ENSTNIG00000006265	cpsf4	100	81.852	ENSJJAG00000019426	Cpsf4	100	80.370	Jaculus_jaculus
ENSTNIG00000006265	cpsf4	100	86.038	ENSKMAG00000015642	cpsf4	100	86.038	Kryptolebias_marmoratus
ENSTNIG00000006265	cpsf4	100	80.812	ENSLACG00000010938	CPSF4	100	80.074	Latimeria_chalumnae
ENSTNIG00000006265	cpsf4	100	60.000	ENSLACG00000018470	-	100	60.000	Latimeria_chalumnae
ENSTNIG00000006265	cpsf4	100	80.669	ENSLOCG00000004814	cpsf4	100	80.669	Lepisosteus_oculatus
ENSTNIG00000006265	cpsf4	100	81.852	ENSLAFG00000000159	CPSF4	100	80.370	Loxodonta_africana
ENSTNIG00000006265	cpsf4	100	81.481	ENSMFAG00000001462	CPSF4	100	80.000	Macaca_fascicularis
ENSTNIG00000006265	cpsf4	100	81.481	ENSMMUG00000019191	CPSF4	100	80.000	Macaca_mulatta
ENSTNIG00000006265	cpsf4	100	81.481	ENSMNEG00000032306	CPSF4	100	80.000	Macaca_nemestrina
ENSTNIG00000006265	cpsf4	100	81.481	ENSMLEG00000034721	CPSF4	100	80.000	Mandrillus_leucophaeus
ENSTNIG00000006265	cpsf4	100	89.474	ENSMAMG00000006244	cpsf4	100	89.474	Mastacembelus_armatus
ENSTNIG00000006265	cpsf4	100	89.434	ENSMZEG00005007515	cpsf4	100	89.057	Maylandia_zebra
ENSTNIG00000006265	cpsf4	87	76.856	ENSMGAG00000004235	CPSF4	100	76.856	Meleagris_gallopavo
ENSTNIG00000006265	cpsf4	100	81.481	ENSMAUG00000021253	Cpsf4	100	80.000	Mesocricetus_auratus
ENSTNIG00000006265	cpsf4	100	81.481	ENSMICG00000017429	CPSF4	100	80.000	Microcebus_murinus
ENSTNIG00000006265	cpsf4	100	81.481	ENSMOCG00000014901	Cpsf4	100	80.000	Microtus_ochrogaster
ENSTNIG00000006265	cpsf4	100	91.729	ENSMMOG00000001813	cpsf4	100	90.977	Mola_mola
ENSTNIG00000006265	cpsf4	100	82.288	ENSMODG00000001367	CPSF4	100	80.812	Monodelphis_domestica
ENSTNIG00000006265	cpsf4	100	87.218	ENSMALG00000012611	cpsf4	100	86.466	Monopterus_albus
ENSTNIG00000006265	cpsf4	100	81.481	MGP_CAROLIEiJ_G0028012	Cpsf4	100	80.000	Mus_caroli
ENSTNIG00000006265	cpsf4	100	81.481	ENSMUSG00000029625	Cpsf4	100	80.000	Mus_musculus
ENSTNIG00000006265	cpsf4	100	81.481	MGP_PahariEiJ_G0024581	Cpsf4	100	80.000	Mus_pahari
ENSTNIG00000006265	cpsf4	100	81.481	MGP_SPRETEiJ_G0029013	Cpsf4	100	80.000	Mus_spretus
ENSTNIG00000006265	cpsf4	100	81.481	ENSMPUG00000016508	CPSF4	100	80.000	Mustela_putorius_furo
ENSTNIG00000006265	cpsf4	87	78.603	ENSMLUG00000010980	CPSF4	100	77.729	Myotis_lucifugus
ENSTNIG00000006265	cpsf4	100	81.481	ENSNGAG00000001567	Cpsf4	100	80.000	Nannospalax_galili
ENSTNIG00000006265	cpsf4	91	88.797	ENSNBRG00000003943	cpsf4	98	88.382	Neolamprologus_brichardi
ENSTNIG00000006265	cpsf4	100	79.699	ENSNLEG00000011074	CPSF4	100	78.868	Nomascus_leucogenys
ENSTNIG00000006265	cpsf4	100	82.288	ENSMEUG00000006955	CPSF4	100	80.812	Notamacropus_eugenii
ENSTNIG00000006265	cpsf4	100	81.481	ENSOPRG00000013663	CPSF4	100	80.000	Ochotona_princeps
ENSTNIG00000006265	cpsf4	100	81.481	ENSODEG00000011181	-	100	80.000	Octodon_degus
ENSTNIG00000006265	cpsf4	98	67.568	ENSODEG00000018283	-	91	66.409	Octodon_degus
ENSTNIG00000006265	cpsf4	100	63.941	ENSODEG00000009779	-	100	64.312	Octodon_degus
ENSTNIG00000006265	cpsf4	100	89.811	ENSONIG00000008495	cpsf4	100	89.811	Oreochromis_niloticus
ENSTNIG00000006265	cpsf4	87	80.000	ENSOANG00000007729	CPSF4	100	79.237	Ornithorhynchus_anatinus
ENSTNIG00000006265	cpsf4	100	52.518	ENSOANG00000009568	-	100	51.079	Ornithorhynchus_anatinus
ENSTNIG00000006265	cpsf4	100	81.481	ENSOCUG00000002437	CPSF4	70	80.000	Oryctolagus_cuniculus
ENSTNIG00000006265	cpsf4	100	89.057	ENSORLG00000022798	cpsf4	100	88.302	Oryzias_latipes
ENSTNIG00000006265	cpsf4	100	89.057	ENSORLG00020008548	cpsf4	100	88.302	Oryzias_latipes_hni
ENSTNIG00000006265	cpsf4	100	88.679	ENSORLG00015019575	cpsf4	100	87.925	Oryzias_latipes_hsok
ENSTNIG00000006265	cpsf4	100	88.679	ENSOMEG00000005176	cpsf4	100	87.925	Oryzias_melastigma
ENSTNIG00000006265	cpsf4	100	81.481	ENSOGAG00000010884	CPSF4	100	80.000	Otolemur_garnettii
ENSTNIG00000006265	cpsf4	100	71.898	ENSOARG00000018668	CPSF4	100	70.438	Ovis_aries
ENSTNIG00000006265	cpsf4	100	81.481	ENSPPAG00000043355	CPSF4	100	80.000	Pan_paniscus
ENSTNIG00000006265	cpsf4	100	81.481	ENSPPRG00000003134	CPSF4	100	80.000	Panthera_pardus
ENSTNIG00000006265	cpsf4	90	81.070	ENSPTIG00000005604	CPSF4	90	79.424	Panthera_tigris_altaica
ENSTNIG00000006265	cpsf4	100	81.481	ENSPTRG00000019453	CPSF4	100	80.000	Pan_troglodytes
ENSTNIG00000006265	cpsf4	100	81.481	ENSPANG00000023123	CPSF4	100	80.000	Papio_anubis
ENSTNIG00000006265	cpsf4	100	80.657	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSTNIG00000006265	cpsf4	80	81.193	ENSPSIG00000011229	CPSF4	100	79.358	Pelodiscus_sinensis
ENSTNIG00000006265	cpsf4	81	59.346	ENSPSIG00000018198	-	100	59.155	Pelodiscus_sinensis
ENSTNIG00000006265	cpsf4	100	77.567	ENSPMGG00000017735	cpsf4	100	77.186	Periophthalmus_magnuspinnatus
ENSTNIG00000006265	cpsf4	100	81.481	ENSPEMG00000004508	Cpsf4	100	80.000	Peromyscus_maniculatus_bairdii
ENSTNIG00000006265	cpsf4	100	82.288	ENSPCIG00000024776	CPSF4	100	80.812	Phascolarctos_cinereus
ENSTNIG00000006265	cpsf4	100	87.547	ENSPFOG00000014912	cpsf4	100	87.547	Poecilia_formosa
ENSTNIG00000006265	cpsf4	100	80.000	ENSPLAG00000009599	cpsf4	100	80.000	Poecilia_latipinna
ENSTNIG00000006265	cpsf4	100	87.547	ENSPMEG00000009790	cpsf4	100	87.547	Poecilia_mexicana
ENSTNIG00000006265	cpsf4	100	87.170	ENSPREG00000018166	cpsf4	100	87.170	Poecilia_reticulata
ENSTNIG00000006265	cpsf4	87	80.000	ENSPPYG00000017378	CPSF4	100	78.298	Pongo_abelii
ENSTNIG00000006265	cpsf4	100	81.852	ENSPCAG00000001892	CPSF4	100	80.370	Procavia_capensis
ENSTNIG00000006265	cpsf4	100	81.481	ENSPCOG00000012771	CPSF4	100	80.000	Propithecus_coquereli
ENSTNIG00000006265	cpsf4	100	76.296	ENSPVAG00000007531	CPSF4	100	74.815	Pteropus_vampyrus
ENSTNIG00000006265	cpsf4	100	89.434	ENSPNYG00000018559	cpsf4	100	89.057	Pundamilia_nyererei
ENSTNIG00000006265	cpsf4	100	83.333	ENSPNAG00000003736	cpsf4	100	84.444	Pygocentrus_nattereri
ENSTNIG00000006265	cpsf4	100	79.848	ENSRNOG00000000985	Cpsf4	100	79.087	Rattus_norvegicus
ENSTNIG00000006265	cpsf4	87	80.426	ENSRBIG00000033886	CPSF4	100	78.723	Rhinopithecus_bieti
ENSTNIG00000006265	cpsf4	100	79.468	ENSRROG00000040431	CPSF4	100	78.707	Rhinopithecus_roxellana
ENSTNIG00000006265	cpsf4	100	81.481	ENSSBOG00000020493	CPSF4	100	80.000	Saimiri_boliviensis_boliviensis
ENSTNIG00000006265	cpsf4	100	82.288	ENSSHAG00000011533	CPSF4	100	80.812	Sarcophilus_harrisii
ENSTNIG00000006265	cpsf4	100	79.348	ENSSFOG00015007883	cpsf4	100	79.348	Scleropages_formosus
ENSTNIG00000006265	cpsf4	100	83.650	ENSSMAG00000006374	cpsf4	100	83.650	Scophthalmus_maximus
ENSTNIG00000006265	cpsf4	100	90.226	ENSSDUG00000018887	cpsf4	100	90.226	Seriola_dumerili
ENSTNIG00000006265	cpsf4	100	90.226	ENSSLDG00000019078	cpsf4	100	90.226	Seriola_lalandi_dorsalis
ENSTNIG00000006265	cpsf4	87	80.426	ENSSARG00000012416	CPSF4	100	78.723	Sorex_araneus
ENSTNIG00000006265	cpsf4	100	80.812	ENSSPUG00000003549	CPSF4	100	79.336	Sphenodon_punctatus
ENSTNIG00000006265	cpsf4	96	58.730	ENSSPUG00000014803	-	97	58.730	Sphenodon_punctatus
ENSTNIG00000006265	cpsf4	100	85.171	ENSSPAG00000006174	cpsf4	100	85.171	Stegastes_partitus
ENSTNIG00000006265	cpsf4	100	79.468	ENSSSCG00000026896	CPSF4	100	78.707	Sus_scrofa
ENSTNIG00000006265	cpsf4	100	77.358	ENSTGUG00000007552	CPSF4	100	77.358	Taeniopygia_guttata
ENSTNIG00000006265	cpsf4	100	96.198	ENSTRUG00000024220	cpsf4	100	96.198	Takifugu_rubripes
ENSTNIG00000006265	cpsf4	87	71.915	ENSTBEG00000011406	CPSF4	100	70.213	Tupaia_belangeri
ENSTNIG00000006265	cpsf4	100	71.375	ENSTTRG00000003007	CPSF4	100	71.375	Tursiops_truncatus
ENSTNIG00000006265	cpsf4	94	78.049	ENSUAMG00000008051	CPSF4	87	77.551	Ursus_americanus
ENSTNIG00000006265	cpsf4	100	79.848	ENSUMAG00000009474	CPSF4	100	79.087	Ursus_maritimus
ENSTNIG00000006265	cpsf4	100	79.468	ENSVVUG00000008824	CPSF4	100	78.707	Vulpes_vulpes
ENSTNIG00000006265	cpsf4	100	76.786	ENSXETG00000009892	cpsf4	100	75.801	Xenopus_tropicalis
ENSTNIG00000006265	cpsf4	99	58.209	ENSXETG00000004641	cpsf4l	99	58.209	Xenopus_tropicalis
ENSTNIG00000006265	cpsf4	100	87.170	ENSXCOG00000016040	cpsf4	100	87.170	Xiphophorus_couchianus
ENSTNIG00000006265	cpsf4	100	87.547	ENSXMAG00000024670	cpsf4	100	87.547	Xiphophorus_maculatus