EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000006962 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 6565 bases
Position: chr15:3694384-3700948
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000009760	ResIII	PF04851.15	1.5e-13	1	1
ENSTNIP00000009760	DEAD	PF00270.29	1.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000009937	-	1428	-	ENSTNIP00000009760	475 (aa)	-	H3CNC9

Gene Model

Click here to download ENSTNIG00000006962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000006962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000006962	hfm1	97	79.579	ENSAPOG00000005304	hfm1	55	79.579	Acanthochromis_polyacanthus
ENSTNIG00000006962	hfm1	97	81.395	ENSAOCG00000022839	hfm1	55	81.395	Amphiprion_ocellaris
ENSTNIG00000006962	hfm1	97	81.607	ENSAPEG00000014316	hfm1	55	81.607	Amphiprion_percula
ENSTNIG00000006962	hfm1	97	80.255	ENSACLG00000009033	hfm1	56	79.657	Astatotilapia_calliptera
ENSTNIG00000006962	hfm1	92	53.084	ENSCSAVG00000005094	-	62	53.084	Ciona_savignyi
ENSTNIG00000006962	hfm1	87	57.991	ENSEBUG00000006133	-	90	57.991	Eptatretus_burgeri
ENSTNIG00000006962	hfm1	97	76.483	ENSELUG00000018944	hfm1	54	76.483	Esox_lucius
ENSTNIG00000006962	hfm1	96	76.759	ENSGMOG00000017436	hfm1	51	76.759	Gadus_morhua
ENSTNIG00000006962	hfm1	97	79.449	ENSGAFG00000018093	hfm1	53	79.526	Gambusia_affinis
ENSTNIG00000006962	hfm1	96	83.441	ENSGACG00000015686	hfm1	51	83.441	Gasterosteus_aculeatus
ENSTNIG00000006962	hfm1	95	81.210	ENSHCOG00000019632	hfm1	58	81.210	Hippocampus_comes
ENSTNIG00000006962	hfm1	96	75.693	ENSIPUG00000017020	hfm1	52	75.484	Ictalurus_punctatus
ENSTNIG00000006962	hfm1	96	82.516	ENSLBEG00000006759	hfm1	55	81.641	Labrus_bergylta
ENSTNIG00000006962	hfm1	96	67.094	ENSLAFG00000015903	-	63	67.094	Loxodonta_africana
ENSTNIG00000006962	hfm1	98	82.218	ENSMAMG00000004623	hfm1	71	79.024	Mastacembelus_armatus
ENSTNIG00000006962	hfm1	97	80.255	ENSMZEG00005004679	hfm1	56	79.657	Maylandia_zebra
ENSTNIG00000006962	hfm1	96	66.809	ENSMGAG00000008437	HFM1	52	66.809	Meleagris_gallopavo
ENSTNIG00000006962	hfm1	99	82.083	ENSMMOG00000006148	hfm1	69	80.976	Mola_mola
ENSTNIG00000006962	hfm1	96	83.156	ENSMALG00000002401	hfm1	54	83.153	Monopterus_albus
ENSTNIG00000006962	hfm1	97	80.467	ENSNBRG00000002910	hfm1	56	80.215	Neolamprologus_brichardi
ENSTNIG00000006962	hfm1	95	80.562	ENSORLG00000026844	hfm1	65	79.899	Oryzias_latipes
ENSTNIG00000006962	hfm1	96	73.504	ENSPKIG00000003810	hfm1	55	73.650	Paramormyrops_kingsleyae
ENSTNIG00000006962	hfm1	95	79.266	ENSPMGG00000011059	hfm1	58	79.266	Periophthalmus_magnuspinnatus
ENSTNIG00000006962	hfm1	97	79.830	ENSPREG00000007803	hfm1	64	78.974	Poecilia_reticulata
ENSTNIG00000006962	hfm1	97	80.042	ENSPNYG00000001795	hfm1	56	79.657	Pundamilia_nyererei
ENSTNIG00000006962	hfm1	96	65.817	ENSSHAG00000014616	-	53	65.817	Sarcophilus_harrisii
ENSTNIG00000006962	hfm1	95	82.505	ENSSDUG00000011424	hfm1	53	82.505	Seriola_dumerili
ENSTNIG00000006962	hfm1	95	82.974	ENSSLDG00000016386	hfm1	53	82.974	Seriola_lalandi_dorsalis
ENSTNIG00000006962	hfm1	97	81.607	ENSSPAG00000001023	hfm1	55	81.607	Stegastes_partitus
ENSTNIG00000006962	hfm1	95	80.994	ENSXMAG00000004178	hfm1	53	80.994	Xiphophorus_maculatus