EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000007093 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: -
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 5977 bases
Position: chr11:2693859-2699835
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000009894	RRM_1	PF00076.22	1.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000010072	-	666	-	ENSTNIP00000009894	221 (aa)	-	H3CNR1

Gene Model

Click here to download ENSTNIG00000007093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000007093's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000007093	-	97	64.159	ENSTNIG00000018417	rbm24b	98	62.832
ENSTNIG00000007093	-	100	62.222	ENSTNIG00000009181	rbm24a	100	60.889
ENSTNIG00000007093	-	55	46.939	ENSTNIG00000015047	hnrnpa1b	57	48.936
ENSTNIG00000007093	-	98	55.752	ENSTNIG00000012600	-	100	55.752

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000007093	-	97	70.721	ENSG00000132819	RBM38	94	87.288	Homo_sapiens
ENSTNIG00000007093	-	100	66.245	ENSAPOG00000003301	rbm38	93	66.245	Acanthochromis_polyacanthus
ENSTNIG00000007093	-	100	86.425	ENSAPOG00000009939	-	95	86.580	Acanthochromis_polyacanthus
ENSTNIG00000007093	-	100	88.688	ENSACIG00000012502	-	100	95.763	Amphilophus_citrinellus
ENSTNIG00000007093	-	100	63.866	ENSACIG00000000010	rbm38	93	63.866	Amphilophus_citrinellus
ENSTNIG00000007093	-	100	66.667	ENSAOCG00000013497	-	93	66.667	Amphiprion_ocellaris
ENSTNIG00000007093	-	99	85.909	ENSAOCG00000012559	RBM38	95	86.161	Amphiprion_ocellaris
ENSTNIG00000007093	-	100	85.281	ENSAPEG00000023581	-	95	85.714	Amphiprion_percula
ENSTNIG00000007093	-	100	67.257	ENSAPEG00000013137	rbm38	93	66.667	Amphiprion_percula
ENSTNIG00000007093	-	100	86.580	ENSATEG00000016710	-	95	87.879	Anabas_testudineus
ENSTNIG00000007093	-	100	66.372	ENSATEG00000016366	rbm38	94	66.372	Anabas_testudineus
ENSTNIG00000007093	-	100	68.142	ENSACAG00000016238	RBM38	90	66.667	Anolis_carolinensis
ENSTNIG00000007093	-	97	71.622	ENSANAG00000031959	RBM38	78	94.681	Aotus_nancymaae
ENSTNIG00000007093	-	100	87.013	ENSACLG00000019514	-	95	87.013	Astatotilapia_calliptera
ENSTNIG00000007093	-	93	68.246	ENSAMXG00000038120	rbm38	89	68.246	Astyanax_mexicanus
ENSTNIG00000007093	-	100	78.222	ENSAMXG00000015601	-	94	78.222	Astyanax_mexicanus
ENSTNIG00000007093	-	97	70.136	ENSBTAG00000008105	RBM38	89	69.545	Bos_taurus
ENSTNIG00000007093	-	97	71.622	ENSCJAG00000019139	RBM38	78	94.681	Callithrix_jacchus
ENSTNIG00000007093	-	97	69.683	ENSCAFG00020021943	RBM38	89	68.636	Canis_lupus_dingo
ENSTNIG00000007093	-	97	68.778	ENSCHIG00000002609	RBM38	89	68.182	Capra_hircus
ENSTNIG00000007093	-	97	70.270	ENSCPOG00000012781	RBM38	89	69.683	Cavia_porcellus
ENSTNIG00000007093	-	97	71.622	ENSCCAG00000036872	RBM38	78	94.681	Cebus_capucinus
ENSTNIG00000007093	-	97	70.721	ENSCATG00000032133	RBM38	78	94.681	Cercocebus_atys
ENSTNIG00000007093	-	97	69.820	ENSCLAG00000005906	RBM38	92	68.778	Chinchilla_lanigera
ENSTNIG00000007093	-	97	70.721	ENSCSAG00000015503	RBM38	89	70.136	Chlorocebus_sabaeus
ENSTNIG00000007093	-	100	69.469	ENSCPBG00000024059	RBM38	100	67.111	Chrysemys_picta_bellii
ENSTNIG00000007093	-	68	62.420	ENSCSAVG00000001132	-	76	50.909	Ciona_savignyi
ENSTNIG00000007093	-	97	54.338	ENSCANG00000030105	-	78	52.055	Colobus_angolensis_palliatus
ENSTNIG00000007093	-	97	67.117	ENSCGRG00001012928	Rbm38	89	68.326	Cricetulus_griseus_chok1gshd
ENSTNIG00000007093	-	72	68.944	ENSCSEG00000020943	rbm38	63	64.249	Cynoglossus_semilaevis
ENSTNIG00000007093	-	98	87.097	ENSCSEG00000004701	-	93	87.097	Cynoglossus_semilaevis
ENSTNIG00000007093	-	100	83.983	ENSCVAG00000005472	-	95	83.983	Cyprinodon_variegatus
ENSTNIG00000007093	-	100	59.833	ENSCVAG00000015952	rbm38	94	60.924	Cyprinodon_variegatus
ENSTNIG00000007093	-	96	72.603	ENSDARG00000058818	rbm38	92	72.603	Danio_rerio
ENSTNIG00000007093	-	97	67.580	ENSDNOG00000032004	RBM38	98	66.514	Dasypus_novemcinctus
ENSTNIG00000007093	-	97	69.683	ENSECAG00000007700	RBM38	89	68.636	Equus_caballus
ENSTNIG00000007093	-	97	68.610	ENSEEUG00000013489	RBM38	89	68.919	Erinaceus_europaeus
ENSTNIG00000007093	-	100	81.034	ENSELUG00000005849	-	95	81.034	Esox_lucius
ENSTNIG00000007093	-	93	68.269	ENSELUG00000000585	-	98	64.889	Esox_lucius
ENSTNIG00000007093	-	97	69.683	ENSFCAG00000042916	RBM38	81	90.000	Felis_catus
ENSTNIG00000007093	-	79	75.706	ENSFALG00000010805	RBM38	90	73.714	Ficedula_albicollis
ENSTNIG00000007093	-	100	61.345	ENSFHEG00000017748	rbm38	94	61.345	Fundulus_heteroclitus
ENSTNIG00000007093	-	100	85.520	ENSFHEG00000006160	-	94	85.520	Fundulus_heteroclitus
ENSTNIG00000007093	-	83	87.568	ENSGMOG00000016655	-	99	85.405	Gadus_morhua
ENSTNIG00000007093	-	100	68.282	ENSGALG00000026081	RBM38	100	66.372	Gallus_gallus
ENSTNIG00000007093	-	99	84.091	ENSGACG00000009873	-	100	84.091	Gasterosteus_aculeatus
ENSTNIG00000007093	-	100	68.919	ENSGACG00000015224	rbm38	100	68.919	Gasterosteus_aculeatus
ENSTNIG00000007093	-	100	69.027	ENSGAGG00000001187	RBM38	100	67.111	Gopherus_agassizii
ENSTNIG00000007093	-	100	90.498	ENSHBUG00000011778	-	94	90.498	Haplochromis_burtoni
ENSTNIG00000007093	-	100	65.639	ENSHBUG00000012058	rbm38	92	65.639	Haplochromis_burtoni
ENSTNIG00000007093	-	97	66.516	ENSHGLG00000015077	RBM38	89	68.326	Heterocephalus_glaber_female
ENSTNIG00000007093	-	88	87.692	ENSHCOG00000005622	-	56	87.692	Hippocampus_comes
ENSTNIG00000007093	-	83	60.109	ENSHCOG00000019040	rbm38	72	59.563	Hippocampus_comes
ENSTNIG00000007093	-	100	73.568	ENSIPUG00000019349	-	94	73.568	Ictalurus_punctatus
ENSTNIG00000007093	-	97	58.369	ENSKMAG00000012402	rbm38	98	58.369	Kryptolebias_marmoratus
ENSTNIG00000007093	-	100	68.067	ENSLBEG00000018878	rbm38	93	68.067	Labrus_bergylta
ENSTNIG00000007093	-	100	90.950	ENSLBEG00000016163	RBM38	94	90.950	Labrus_bergylta
ENSTNIG00000007093	-	100	77.477	ENSLOCG00000003456	rbm38	94	77.477	Lepisosteus_oculatus
ENSTNIG00000007093	-	97	70.721	ENSMFAG00000043808	RBM38	78	94.681	Macaca_fascicularis
ENSTNIG00000007093	-	97	70.721	ENSMMUG00000031391	RBM38	78	94.681	Macaca_mulatta
ENSTNIG00000007093	-	97	70.721	ENSMNEG00000034683	RBM38	78	94.681	Macaca_nemestrina
ENSTNIG00000007093	-	51	72.321	ENSMLEG00000043261	-	90	72.321	Mandrillus_leucophaeus
ENSTNIG00000007093	-	100	65.546	ENSMAMG00000024135	rbm38	93	64.286	Mastacembelus_armatus
ENSTNIG00000007093	-	100	84.416	ENSMAMG00000020499	RBM38	95	85.714	Mastacembelus_armatus
ENSTNIG00000007093	-	100	63.445	ENSMZEG00005026036	rbm38	93	63.445	Maylandia_zebra
ENSTNIG00000007093	-	100	90.498	ENSMZEG00005000849	-	94	90.498	Maylandia_zebra
ENSTNIG00000007093	-	97	68.919	ENSMAUG00000021211	Rbm38	89	69.683	Mesocricetus_auratus
ENSTNIG00000007093	-	97	70.721	ENSMICG00000038011	RBM38	98	69.683	Microcebus_murinus
ENSTNIG00000007093	-	97	68.468	ENSMOCG00000008715	Rbm38	89	69.231	Microtus_ochrogaster
ENSTNIG00000007093	-	100	90.498	ENSMMOG00000020051	-	95	89.610	Mola_mola
ENSTNIG00000007093	-	100	66.960	ENSMODG00000016458	RBM38	92	65.333	Monodelphis_domestica
ENSTNIG00000007093	-	82	94.505	ENSMALG00000004680	RBM38	69	94.505	Monopterus_albus
ENSTNIG00000007093	-	98	61.538	ENSMALG00000022327	rbm38	91	61.538	Monopterus_albus
ENSTNIG00000007093	-	97	66.968	MGP_CAROLIEiJ_G0024745	Rbm38	89	69.231	Mus_caroli
ENSTNIG00000007093	-	97	66.968	ENSMUSG00000027510	Rbm38	89	69.231	Mus_musculus
ENSTNIG00000007093	-	97	66.516	MGP_PahariEiJ_G0026186	Rbm38	89	68.778	Mus_pahari
ENSTNIG00000007093	-	97	66.968	MGP_SPRETEiJ_G0025665	Rbm38	89	69.231	Mus_spretus
ENSTNIG00000007093	-	80	75.824	ENSMPUG00000006518	RBM38	94	73.158	Mustela_putorius_furo
ENSTNIG00000007093	-	97	69.683	ENSMLUG00000011140	RBM38	98	68.636	Myotis_lucifugus
ENSTNIG00000007093	-	100	87.013	ENSNBRG00000022545	-	95	87.013	Neolamprologus_brichardi
ENSTNIG00000007093	-	100	66.814	ENSNBRG00000022685	rbm38	91	66.814	Neolamprologus_brichardi
ENSTNIG00000007093	-	53	77.778	ENSMEUG00000005475	-	86	77.778	Notamacropus_eugenii
ENSTNIG00000007093	-	97	69.820	ENSODEG00000007980	RBM38	89	69.231	Octodon_degus
ENSTNIG00000007093	-	99	63.713	ENSONIG00000017073	rbm38	95	63.713	Oreochromis_niloticus
ENSTNIG00000007093	-	99	86.957	ENSONIG00000020324	-	95	86.957	Oreochromis_niloticus
ENSTNIG00000007093	-	100	67.257	ENSOANG00000009259	RBM38	81	66.514	Ornithorhynchus_anatinus
ENSTNIG00000007093	-	100	61.506	ENSORLG00000012154	rbm38	93	61.506	Oryzias_latipes
ENSTNIG00000007093	-	100	81.116	ENSORLG00000027180	-	95	81.974	Oryzias_latipes
ENSTNIG00000007093	-	100	81.116	ENSORLG00020020751	-	95	81.974	Oryzias_latipes_hni
ENSTNIG00000007093	-	100	61.088	ENSORLG00020017871	rbm38	93	61.088	Oryzias_latipes_hni
ENSTNIG00000007093	-	100	61.506	ENSORLG00015012606	rbm38	93	61.506	Oryzias_latipes_hsok
ENSTNIG00000007093	-	100	82.328	ENSORLG00015017040	-	95	82.328	Oryzias_latipes_hsok
ENSTNIG00000007093	-	100	81.818	ENSOMEG00000023912	-	95	82.403	Oryzias_melastigma
ENSTNIG00000007093	-	100	62.343	ENSOMEG00000006805	rbm38	91	63.636	Oryzias_melastigma
ENSTNIG00000007093	-	97	71.171	ENSOGAG00000029136	RBM38	88	70.588	Otolemur_garnettii
ENSTNIG00000007093	-	97	69.683	ENSPPRG00000009507	RBM38	81	90.000	Panthera_pardus
ENSTNIG00000007093	-	88	72.637	ENSPTRG00000013661	RBM38	81	91.000	Pan_troglodytes
ENSTNIG00000007093	-	57	84.921	ENSPTRG00000045845	-	68	84.921	Pan_troglodytes
ENSTNIG00000007093	-	97	57.014	ENSPANG00000033127	-	91	55.455	Papio_anubis
ENSTNIG00000007093	-	97	70.721	ENSPANG00000020919	-	78	94.681	Papio_anubis
ENSTNIG00000007093	-	100	70.563	ENSPKIG00000025417	rbm38	95	70.996	Paramormyrops_kingsleyae
ENSTNIG00000007093	-	99	74.888	ENSPKIG00000018122	-	97	90.351	Paramormyrops_kingsleyae
ENSTNIG00000007093	-	100	69.027	ENSPSIG00000011649	RBM38	92	67.111	Pelodiscus_sinensis
ENSTNIG00000007093	-	100	78.723	ENSPMGG00000017094	-	95	79.149	Periophthalmus_magnuspinnatus
ENSTNIG00000007093	-	97	64.655	ENSPMGG00000011343	rbm38	92	64.224	Periophthalmus_magnuspinnatus
ENSTNIG00000007093	-	100	66.814	ENSPCIG00000013648	RBM38	92	65.333	Phascolarctos_cinereus
ENSTNIG00000007093	-	100	58.091	ENSPFOG00000011658	rbm38	94	60.166	Poecilia_formosa
ENSTNIG00000007093	-	100	58.678	ENSPLAG00000005218	rbm38	94	60.166	Poecilia_latipinna
ENSTNIG00000007093	-	100	81.974	ENSPLAG00000002500	-	95	81.974	Poecilia_latipinna
ENSTNIG00000007093	-	100	58.506	ENSPMEG00000015770	rbm38	94	60.166	Poecilia_mexicana
ENSTNIG00000007093	-	100	58.091	ENSPREG00000007398	rbm38	94	60.166	Poecilia_reticulata
ENSTNIG00000007093	-	97	70.270	ENSPCOG00000026201	RBM38	77	94.681	Propithecus_coquereli
ENSTNIG00000007093	-	68	94.231	ENSPVAG00000006457	RBM38	62	94.231	Pteropus_vampyrus
ENSTNIG00000007093	-	100	65.044	ENSPNYG00000021373	rbm38	92	65.044	Pundamilia_nyererei
ENSTNIG00000007093	-	100	90.498	ENSPNYG00000019727	-	100	96.610	Pundamilia_nyererei
ENSTNIG00000007093	-	100	76.889	ENSPNAG00000015123	-	97	84.962	Pygocentrus_nattereri
ENSTNIG00000007093	-	92	72.727	ENSPNAG00000010596	rbm38	88	72.727	Pygocentrus_nattereri
ENSTNIG00000007093	-	97	70.270	ENSRNOG00000006420	Rbm38	89	69.683	Rattus_norvegicus
ENSTNIG00000007093	-	100	57.778	ENSRROG00000036388	-	89	56.000	Rhinopithecus_roxellana
ENSTNIG00000007093	-	97	71.171	ENSSBOG00000031053	RBM38	92	91.000	Saimiri_boliviensis_boliviensis
ENSTNIG00000007093	-	99	71.622	ENSSFOG00015004453	rbm38	94	74.324	Scleropages_formosus
ENSTNIG00000007093	-	100	85.714	ENSSDUG00000021082	RBM38	95	85.714	Seriola_dumerili
ENSTNIG00000007093	-	100	66.387	ENSSDUG00000022611	rbm38	93	66.387	Seriola_dumerili
ENSTNIG00000007093	-	100	86.580	ENSSLDG00000011778	RBM38	95	86.580	Seriola_lalandi_dorsalis
ENSTNIG00000007093	-	100	68.142	ENSSLDG00000010845	rbm38	92	68.142	Seriola_lalandi_dorsalis
ENSTNIG00000007093	-	100	66.807	ENSSPAG00000011113	rbm38	93	66.807	Stegastes_partitus
ENSTNIG00000007093	-	100	86.580	ENSSPAG00000020989	RBM38	95	87.013	Stegastes_partitus
ENSTNIG00000007093	-	97	70.136	ENSSSCG00000007504	RBM38	89	69.545	Sus_scrofa
ENSTNIG00000007093	-	100	64.530	ENSTRUG00000024954	rbm38	93	64.530	Takifugu_rubripes
ENSTNIG00000007093	-	100	90.558	ENSTRUG00000019869	-	95	90.558	Takifugu_rubripes
ENSTNIG00000007093	-	97	70.270	ENSUAMG00000019780	RBM38	89	69.683	Ursus_americanus
ENSTNIG00000007093	-	97	69.683	ENSVVUG00000017246	RBM38	89	68.636	Vulpes_vulpes
ENSTNIG00000007093	-	100	65.778	ENSXETG00000011268	rbm38	99	64.286	Xenopus_tropicalis
ENSTNIG00000007093	-	72	77.108	ENSXCOG00000017324	-	62	84.028	Xiphophorus_couchianus
ENSTNIG00000007093	-	100	59.664	ENSXMAG00000023662	rbm38	94	61.765	Xiphophorus_maculatus