EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000007101 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 6890 bases
Position: chrUn_random:88842295-88849184
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000009902	ResIII	PF04851.15	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000010080	-	3810	-	ENSTNIP00000009902	1270 (aa)	-	H3CNR9

Gene Model

Click here to download ENSTNIG00000007101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000007101's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000007101	chd1	83	67.474	ENSTNIG00000010760	chd2	82	67.102

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000007101	chd1	95	78.204	ENSG00000153922	CHD1	72	77.606	Homo_sapiens
ENSTNIG00000007101	chd1	80	91.225	ENSAPOG00000005764	chd1	89	91.321	Acanthochromis_polyacanthus
ENSTNIG00000007101	chd1	85	89.891	ENSAOCG00000023105	chd1	67	90.918	Amphiprion_ocellaris
ENSTNIG00000007101	chd1	85	91.629	ENSAPEG00000013544	chd1	67	92.703	Amphiprion_percula
ENSTNIG00000007101	chd1	95	85.961	ENSATEG00000010676	chd1	72	86.125	Anabas_testudineus
ENSTNIG00000007101	chd1	84	87.258	ENSAMXG00000010843	chd1	82	87.734	Astyanax_mexicanus
ENSTNIG00000007101	chd1	95	78.240	ENSCATG00000032035	CHD1	72	77.451	Cercocebus_atys
ENSTNIG00000007101	chd1	95	78.240	ENSCSAG00000015339	CHD1	72	77.317	Chlorocebus_sabaeus
ENSTNIG00000007101	chd1	95	75.693	ENSCANG00000036916	CHD1	72	74.288	Colobus_angolensis_palliatus
ENSTNIG00000007101	chd1	100	77.459	ENSCGRG00001023943	Chd1	72	77.488	Cricetulus_griseus_chok1gshd
ENSTNIG00000007101	chd1	100	77.459	ENSCGRG00000008652	Chd1	72	77.488	Cricetulus_griseus_crigri
ENSTNIG00000007101	chd1	85	89.061	ENSCSEG00000009553	chd1	70	89.061	Cynoglossus_semilaevis
ENSTNIG00000007101	chd1	95	78.438	ENSEASG00005016110	CHD1	87	77.380	Equus_asinus_asinus
ENSTNIG00000007101	chd1	86	86.413	ENSELUG00000017677	chd1	65	88.701	Esox_lucius
ENSTNIG00000007101	chd1	91	84.206	ENSFHEG00000021164	chd1	78	89.775	Fundulus_heteroclitus
ENSTNIG00000007101	chd1	95	81.863	ENSGMOG00000001537	chd1	68	82.193	Gadus_morhua
ENSTNIG00000007101	chd1	89	80.351	ENSGALG00000031327	-	69	80.446	Gallus_gallus
ENSTNIG00000007101	chd1	97	92.240	ENSGAFG00000019880	chd1	77	81.579	Gambusia_affinis
ENSTNIG00000007101	chd1	95	74.165	ENSGGOG00000011463	CHD1	69	78.082	Gorilla_gorilla
ENSTNIG00000007101	chd1	85	90.545	ENSHCOG00000014222	chd1	69	89.727	Hippocampus_comes
ENSTNIG00000007101	chd1	85	87.956	ENSIPUG00000001369	chd1	69	88.230	Ictalurus_punctatus
ENSTNIG00000007101	chd1	78	76.337	ENSLAFG00000023183	CHD1	94	75.321	Loxodonta_africana
ENSTNIG00000007101	chd1	95	78.240	ENSMFAG00000031226	CHD1	72	77.451	Macaca_fascicularis
ENSTNIG00000007101	chd1	95	78.240	ENSMMUG00000014090	CHD1	86	76.341	Macaca_mulatta
ENSTNIG00000007101	chd1	95	78.094	ENSMNEG00000045073	CHD1	72	77.451	Macaca_nemestrina
ENSTNIG00000007101	chd1	95	71.944	ENSMLEG00000041096	CHD1	71	73.241	Mandrillus_leucophaeus
ENSTNIG00000007101	chd1	86	90.027	ENSMZEG00005010957	chd1	83	90.984	Maylandia_zebra
ENSTNIG00000007101	chd1	100	78.002	ENSMOCG00000019121	Chd1	73	78.467	Microtus_ochrogaster
ENSTNIG00000007101	chd1	59	80.769	ENSMODG00000019266	-	96	81.831	Monodelphis_domestica
ENSTNIG00000007101	chd1	95	88.690	ENSMALG00000013317	chd1	86	87.531	Monopterus_albus
ENSTNIG00000007101	chd1	100	78.079	MGP_CAROLIEiJ_G0021099	Chd1	94	77.789	Mus_caroli
ENSTNIG00000007101	chd1	100	78.594	ENSMUSG00000023852	Chd1	94	77.690	Mus_musculus
ENSTNIG00000007101	chd1	100	78.903	MGP_PahariEiJ_G0023414	Chd1	94	77.712	Mus_pahari
ENSTNIG00000007101	chd1	85	90.619	ENSNBRG00000006860	chd1	70	90.710	Neolamprologus_brichardi
ENSTNIG00000007101	chd1	95	78.367	ENSNLEG00000014493	CHD1	72	77.687	Nomascus_leucogenys
ENSTNIG00000007101	chd1	95	78.264	ENSOANG00000004891	CHD1	65	85.751	Ornithorhynchus_anatinus
ENSTNIG00000007101	chd1	78	86.014	ENSORLG00015016725	chd1	94	85.814	Oryzias_latipes_hsok
ENSTNIG00000007101	chd1	95	77.110	ENSPPAG00000043367	CHD1	73	76.275	Pan_paniscus
ENSTNIG00000007101	chd1	95	78.367	ENSPTRG00000017103	CHD1	72	77.606	Pan_troglodytes
ENSTNIG00000007101	chd1	95	78.240	ENSPANG00000006387	CHD1	72	77.451	Papio_anubis
ENSTNIG00000007101	chd1	85	82.676	ENSPKIG00000024719	chd1	68	86.364	Paramormyrops_kingsleyae
ENSTNIG00000007101	chd1	87	88.998	ENSPMGG00000005785	chd1	84	88.571	Periophthalmus_magnuspinnatus
ENSTNIG00000007101	chd1	100	77.709	ENSPEMG00000015939	Chd1	71	78.025	Peromyscus_maniculatus_bairdii
ENSTNIG00000007101	chd1	65	84.330	ENSPLAG00000006473	-	85	83.914	Poecilia_latipinna
ENSTNIG00000007101	chd1	95	86.967	ENSPREG00000004209	chd1	73	86.431	Poecilia_reticulata
ENSTNIG00000007101	chd1	100	78.466	ENSRNOG00000014434	Chd1	86	77.950	Rattus_norvegicus
ENSTNIG00000007101	chd1	95	78.077	ENSRBIG00000044325	CHD1	73	77.514	Rhinopithecus_bieti
ENSTNIG00000007101	chd1	95	78.077	ENSRROG00000001726	CHD1	72	77.514	Rhinopithecus_roxellana
ENSTNIG00000007101	chd1	87	83.986	ENSSFOG00015007161	chd1	79	87.112	Scleropages_formosus
ENSTNIG00000007101	chd1	95	89.289	ENSSDUG00000018314	chd1	86	89.271	Seriola_dumerili
ENSTNIG00000007101	chd1	68	91.581	ENSSLDG00000017244	chd1	88	91.468	Seriola_lalandi_dorsalis
ENSTNIG00000007101	chd1	95	88.581	ENSSPAG00000007024	chd1	86	88.735	Stegastes_partitus
ENSTNIG00000007101	chd1	95	77.969	ENSSSCG00000014177	CHD1	83	78.023	Sus_scrofa
ENSTNIG00000007101	chd1	100	91.400	ENSTRUG00000010282	chd1	72	92.492	Takifugu_rubripes
ENSTNIG00000007101	chd1	95	81.729	ENSXCOG00000017184	chd1	74	80.278	Xiphophorus_couchianus
ENSTNIG00000007101	chd1	95	86.967	ENSXMAG00000014538	chd1	89	86.266	Xiphophorus_maculatus