EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000007398 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 1686 bases
Position: chr1:5883326-5885011
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000010204	RRM_1	PF00076.22	3.6e-33	1	2
ENSTNIP00000010204	RRM_1	PF00076.22	3.6e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000010385	-	1550	-	ENSTNIP00000010204	261 (aa)	-	H3CPM1

Gene Model

Click here to download ENSTNIG00000007398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000007398's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000007398	-	75	37.500	ENSTNIG00000013499	hnrnpd	75	36.559
ENSTNIG00000007398	-	89	52.521	ENSTNIG00000015047	hnrnpa1b	74	58.791
ENSTNIG00000007398	-	70	34.783	ENSTNIG00000011312	elavl2	68	34.783
ENSTNIG00000007398	-	83	35.648	ENSTNIG00000010512	hnrnpaba	65	38.150
ENSTNIG00000007398	-	74	54.404	ENSTNIG00000016958	hnrnpa3	74	44.015
ENSTNIG00000007398	-	69	34.783	ENSTNIG00000015485	elavl4	68	34.783
ENSTNIG00000007398	-	60	42.105	ENSTNIG00000000450	cirbpa	53	40.244
ENSTNIG00000007398	-	95	35.743	ENSTNIG00000007596	-	74	34.351
ENSTNIG00000007398	-	79	36.842	ENSTNIG00000011469	MSI1	52	38.202
ENSTNIG00000007398	-	66	38.750	ENSTNIG00000017903	pabpc1l	58	38.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000007398	-	89	54.113	ENSAPOG00000019369	-	71	53.448	Acanthochromis_polyacanthus
ENSTNIG00000007398	-	69	73.481	ENSACIG00000021815	-	90	74.054	Amphilophus_citrinellus
ENSTNIG00000007398	-	89	54.113	ENSAOCG00000005289	-	77	44.186	Amphiprion_ocellaris
ENSTNIG00000007398	-	89	54.113	ENSAPEG00000004179	-	77	44.186	Amphiprion_percula
ENSTNIG00000007398	-	73	58.421	ENSATEG00000022918	hnrnpa1a	89	59.890	Anabas_testudineus
ENSTNIG00000007398	-	68	89.441	ENSATEG00000003423	-	76	89.441	Anabas_testudineus
ENSTNIG00000007398	-	68	67.978	ENSACAG00000017109	-	57	66.845	Anolis_carolinensis
ENSTNIG00000007398	-	84	56.364	ENSACLG00000006940	-	57	61.538	Astatotilapia_calliptera
ENSTNIG00000007398	-	69	80.226	ENSAMXG00000037730	-	69	68.534	Astyanax_mexicanus
ENSTNIG00000007398	-	72	76.190	ENSCSEG00000014051	-	72	80.682	Cynoglossus_semilaevis
ENSTNIG00000007398	-	80	59.777	ENSCSEG00000007589	hnrnpa1a	69	59.890	Cynoglossus_semilaevis
ENSTNIG00000007398	-	81	55.046	ENSCVAG00000012637	hnrnpa1a	75	50.400	Cyprinodon_variegatus
ENSTNIG00000007398	-	69	56.250	ENSDARG00000011020	hnrnpa1a	72	48.014	Danio_rerio
ENSTNIG00000007398	-	74	69.072	ENSDORG00000026425	-	86	59.316	Dipodomys_ordii
ENSTNIG00000007398	-	70	58.242	ENSELUG00000007372	-	64	49.819	Esox_lucius
ENSTNIG00000007398	-	81	78.889	ENSGMOG00000020353	-	97	78.919	Gadus_morhua
ENSTNIG00000007398	-	88	54.348	ENSGAFG00000007751	-	55	60.989	Gambusia_affinis
ENSTNIG00000007398	-	68	70.787	ENSGAFG00000016803	-	55	70.270	Gambusia_affinis
ENSTNIG00000007398	-	69	58.659	ENSGACG00000009435	-	50	58.919	Gasterosteus_aculeatus
ENSTNIG00000007398	-	84	56.364	ENSHBUG00000005647	hnrnpa1a	58	61.538	Haplochromis_burtoni
ENSTNIG00000007398	-	68	61.017	ENSIPUG00000022440	-	70	60.976	Ictalurus_punctatus
ENSTNIG00000007398	-	69	82.873	ENSIPUG00000001991	-	79	82.796	Ictalurus_punctatus
ENSTNIG00000007398	-	79	56.863	ENSIPUG00000002023	hnrnpa1a	75	56.571	Ictalurus_punctatus
ENSTNIG00000007398	-	68	50.282	ENSJJAG00000009178	-	61	32.569	Jaculus_jaculus
ENSTNIG00000007398	-	69	59.777	ENSKMAG00000020859	-	74	48.361	Kryptolebias_marmoratus
ENSTNIG00000007398	-	69	60.335	ENSLBEG00000010010	hnrnpa1a	66	53.333	Labrus_bergylta
ENSTNIG00000007398	-	69	53.591	ENSMFAG00000028351	-	68	48.899	Macaca_fascicularis
ENSTNIG00000007398	-	85	54.260	ENSMAMG00000007606	-	74	48.387	Mastacembelus_armatus
ENSTNIG00000007398	-	84	56.364	ENSMZEG00005027173	hnrnpa1a	57	61.538	Maylandia_zebra
ENSTNIG00000007398	-	69	60.000	ENSMMOG00000008251	hnrnpa1a	76	60.000	Mola_mola
ENSTNIG00000007398	-	84	54.425	ENSMALG00000014091	hnrnpa1a	74	48.606	Monopterus_albus
ENSTNIG00000007398	-	68	73.034	ENSMALG00000008886	-	90	72.432	Monopterus_albus
ENSTNIG00000007398	-	84	56.364	ENSNBRG00000018441	-	58	61.538	Neolamprologus_brichardi
ENSTNIG00000007398	-	75	81.407	ENSNBRG00000014469	-	86	85.946	Neolamprologus_brichardi
ENSTNIG00000007398	-	84	45.878	ENSORLG00000008001	-	74	49.167	Oryzias_latipes
ENSTNIG00000007398	-	79	62.439	ENSORLG00000029240	-	100	62.439	Oryzias_latipes
ENSTNIG00000007398	-	94	60.000	ENSORLG00020006043	-	71	64.115	Oryzias_latipes_hni
ENSTNIG00000007398	-	81	63.725	ENSORLG00020022498	-	94	63.725	Oryzias_latipes_hni
ENSTNIG00000007398	-	84	45.878	ENSORLG00020006582	hnrnpa1a	85	61.878	Oryzias_latipes_hni
ENSTNIG00000007398	-	69	61.453	ENSORLG00015022294	-	74	49.167	Oryzias_latipes_hsok
ENSTNIG00000007398	-	69	61.453	ENSOMEG00000015959	-	57	61.538	Oryzias_melastigma
ENSTNIG00000007398	-	71	79.570	ENSPMGG00000016392	-	91	79.570	Periophthalmus_magnuspinnatus
ENSTNIG00000007398	-	85	52.703	ENSPMGG00000011804	hnrnpa1a	74	60.989	Periophthalmus_magnuspinnatus
ENSTNIG00000007398	-	84	55.708	ENSPFOG00000001825	-	69	53.913	Poecilia_formosa
ENSTNIG00000007398	-	84	55.708	ENSPMEG00000002425	-	69	53.913	Poecilia_mexicana
ENSTNIG00000007398	-	73	82.990	ENSPNYG00000020729	-	94	85.946	Pundamilia_nyererei
ENSTNIG00000007398	-	68	61.017	ENSPNAG00000021630	-	70	49.402	Pygocentrus_nattereri
ENSTNIG00000007398	-	72	55.615	ENSPNAG00000007752	hnrnpa1a	78	54.167	Pygocentrus_nattereri
ENSTNIG00000007398	-	68	71.910	ENSSMAG00000010246	-	83	70.588	Scophthalmus_maximus
ENSTNIG00000007398	-	80	59.777	ENSSMAG00000004641	hnrnpa1a	70	59.890	Scophthalmus_maximus
ENSTNIG00000007398	-	68	87.500	ENSSMAG00000010279	-	94	87.500	Scophthalmus_maximus
ENSTNIG00000007398	-	66	89.017	ENSSDUG00000002431	-	84	87.571	Seriola_dumerili
ENSTNIG00000007398	-	80	60.335	ENSSDUG00000013908	hnrnpa1a	86	60.326	Seriola_dumerili
ENSTNIG00000007398	-	80	59.740	ENSSLDG00000003718	hnrnpa1a	80	60.355	Seriola_lalandi_dorsalis
ENSTNIG00000007398	-	89	54.545	ENSSPAG00000018518	-	57	60.989	Stegastes_partitus
ENSTNIG00000007398	-	89	52.381	ENSTRUG00000020491	-	72	51.515	Takifugu_rubripes
ENSTNIG00000007398	-	80	60.131	ENSXCOG00000009001	-	91	51.542	Xiphophorus_couchianus
ENSTNIG00000007398	-	84	55.251	ENSXMAG00000008076	-	69	53.478	Xiphophorus_maculatus