EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000007470 (Gene tree)
Gene ID: -
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 30292 bases
Position: chr17:11133372-11163663
Accession: ZDB-GENE-030131-7887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000010278	PPR	PF01535.20	1.7e-30	1	2
ENSTNIP00000010278	PPR	PF01535.20	1.7e-30	2	2
ENSTNIP00000010279	PPR	PF01535.20	2.8e-30	1	2
ENSTNIP00000010279	PPR	PF01535.20	2.8e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000010459	-	4002	-	ENSTNIP00000010278	1334 (aa)	-	H3CPU5
ENSTNIT00000010460	-	4137	-	ENSTNIP00000010279	1379 (aa)	-	H3CPU6

Gene Model

Click here to download ENSTNIG00000007470's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000007470's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000007470	lrpprc	100	69.985	ENSAPOG00000016610	lrpprc	99	69.144	Acanthochromis_polyacanthus
ENSTNIG00000007470	lrpprc	99	51.750	ENSAMEG00000005852	LRPPRC	99	51.092	Ailuropoda_melanoleuca
ENSTNIG00000007470	lrpprc	99	67.383	ENSACIG00000009604	lrpprc	99	67.045	Amphilophus_citrinellus
ENSTNIG00000007470	lrpprc	100	70.640	ENSAOCG00000005886	lrpprc	99	69.769	Amphiprion_ocellaris
ENSTNIG00000007470	lrpprc	100	66.384	ENSAPEG00000002937	lrpprc	98	66.384	Amphiprion_percula
ENSTNIG00000007470	lrpprc	100	58.000	ENSATEG00000010555	lrpprc	95	71.991	Anabas_testudineus
ENSTNIG00000007470	lrpprc	99	55.018	ENSACAG00000029278	LRPPRC	99	53.684	Anolis_carolinensis
ENSTNIG00000007470	lrpprc	99	51.256	ENSANAG00000027440	LRPPRC	97	55.556	Aotus_nancymaae
ENSTNIG00000007470	lrpprc	100	67.110	ENSACLG00000023712	lrpprc	92	73.978	Astatotilapia_calliptera
ENSTNIG00000007470	lrpprc	99	50.812	ENSCJAG00000000794	LRPPRC	97	54.802	Callithrix_jacchus
ENSTNIG00000007470	lrpprc	99	51.808	ENSCHIG00000020173	LRPPRC	99	51.058	Capra_hircus
ENSTNIG00000007470	lrpprc	99	41.336	ENSCAPG00000013631	LRPPRC	98	41.336	Cavia_aperea
ENSTNIG00000007470	lrpprc	90	48.978	ENSCPOG00000000204	LRPPRC	99	48.978	Cavia_porcellus
ENSTNIG00000007470	lrpprc	99	51.403	ENSCCAG00000031900	LRPPRC	97	55.556	Cebus_capucinus
ENSTNIG00000007470	lrpprc	99	51.182	ENSCATG00000014187	LRPPRC	98	54.771	Cercocebus_atys
ENSTNIG00000007470	lrpprc	99	49.375	ENSCLAG00000005203	LRPPRC	99	48.865	Chinchilla_lanigera
ENSTNIG00000007470	lrpprc	99	51.625	ENSCSAG00000013233	LRPPRC	99	50.568	Chlorocebus_sabaeus
ENSTNIG00000007470	lrpprc	84	51.697	ENSCHOG00000003631	LRPPRC	84	51.697	Choloepus_hoffmanni
ENSTNIG00000007470	lrpprc	99	49.298	ENSCANG00000034961	LRPPRC	99	53.608	Colobus_angolensis_palliatus
ENSTNIG00000007470	lrpprc	99	50.886	ENSCGRG00001016261	Lrpprc	99	50.000	Cricetulus_griseus_chok1gshd
ENSTNIG00000007470	lrpprc	99	50.886	ENSCGRG00000004072	Lrpprc	99	50.000	Cricetulus_griseus_crigri
ENSTNIG00000007470	lrpprc	99	49.817	ENSCSEG00000003850	lrpprc	96	55.131	Cynoglossus_semilaevis
ENSTNIG00000007470	lrpprc	100	70.162	ENSCVAG00000012967	lrpprc	99	68.847	Cyprinodon_variegatus
ENSTNIG00000007470	lrpprc	99	56.860	ENSDARG00000043970	lrpprc	98	55.897	Danio_rerio
ENSTNIG00000007470	lrpprc	82	40.968	ENSDNOG00000032336	-	98	40.968	Dasypus_novemcinctus
ENSTNIG00000007470	lrpprc	99	51.176	ENSDNOG00000012594	-	99	50.353	Dasypus_novemcinctus
ENSTNIG00000007470	lrpprc	99	51.513	ENSDORG00000012233	Lrpprc	99	50.390	Dipodomys_ordii
ENSTNIG00000007470	lrpprc	99	51.290	ENSETEG00000006657	LRPPRC	99	50.141	Echinops_telfairi
ENSTNIG00000007470	lrpprc	77	57.214	ENSEEUG00000012340	LRPPRC	80	57.214	Erinaceus_europaeus
ENSTNIG00000007470	lrpprc	94	62.371	ENSELUG00000012803	lrpprc	95	62.784	Esox_lucius
ENSTNIG00000007470	lrpprc	99	52.759	ENSFCAG00000013468	LRPPRC	99	51.778	Felis_catus
ENSTNIG00000007470	lrpprc	99	48.140	ENSFALG00000012738	LRPPRC	98	48.317	Ficedula_albicollis
ENSTNIG00000007470	lrpprc	99	49.295	ENSFDAG00000015328	LRPPRC	99	47.542	Fukomys_damarensis
ENSTNIG00000007470	lrpprc	100	68.557	ENSFHEG00000019604	lrpprc	99	67.461	Fundulus_heteroclitus
ENSTNIG00000007470	lrpprc	99	61.538	ENSGMOG00000008337	lrpprc	100	61.417	Gadus_morhua
ENSTNIG00000007470	lrpprc	99	67.530	ENSGAFG00000001455	lrpprc	99	66.925	Gambusia_affinis
ENSTNIG00000007470	lrpprc	99	69.934	ENSGACG00000010679	lrpprc	99	69.934	Gasterosteus_aculeatus
ENSTNIG00000007470	lrpprc	100	72.875	ENSHBUG00000000393	lrpprc	97	71.138	Haplochromis_burtoni
ENSTNIG00000007470	lrpprc	99	48.824	ENSHGLG00000006123	LRPPRC	99	48.088	Heterocephalus_glaber_female
ENSTNIG00000007470	lrpprc	63	46.690	ENSHGLG00100005960	-	99	46.690	Heterocephalus_glaber_male
ENSTNIG00000007470	lrpprc	97	68.608	ENSHCOG00000002107	lrpprc	100	67.583	Hippocampus_comes
ENSTNIG00000007470	lrpprc	99	60.895	ENSIPUG00000009406	lrpprc	98	59.986	Ictalurus_punctatus
ENSTNIG00000007470	lrpprc	99	51.252	ENSSTOG00000011185	LRPPRC	99	50.212	Ictidomys_tridecemlineatus
ENSTNIG00000007470	lrpprc	99	50.074	ENSJJAG00000020475	Lrpprc	99	49.259	Jaculus_jaculus
ENSTNIG00000007470	lrpprc	100	61.993	ENSKMAG00000003287	lrpprc	85	60.814	Kryptolebias_marmoratus
ENSTNIG00000007470	lrpprc	99	61.369	ENSLBEG00000023225	lrpprc	96	71.429	Labrus_bergylta
ENSTNIG00000007470	lrpprc	99	58.065	ENSLACG00000014030	LRPPRC	99	57.083	Latimeria_chalumnae
ENSTNIG00000007470	lrpprc	98	61.516	ENSLOCG00000016390	lrpprc	97	59.566	Lepisosteus_oculatus
ENSTNIG00000007470	lrpprc	99	48.605	ENSLAFG00000008614	LRPPRC	99	47.713	Loxodonta_africana
ENSTNIG00000007470	lrpprc	99	51.108	ENSMFAG00000041560	LRPPRC	99	54.874	Macaca_fascicularis
ENSTNIG00000007470	lrpprc	99	50.665	ENSMMUG00000019841	LRPPRC	99	54.874	Macaca_mulatta
ENSTNIG00000007470	lrpprc	99	51.477	ENSMNEG00000031613	LRPPRC	98	54.771	Macaca_nemestrina
ENSTNIG00000007470	lrpprc	98	63.597	ENSMAMG00000021835	lrpprc	98	63.669	Mastacembelus_armatus
ENSTNIG00000007470	lrpprc	100	72.727	ENSMZEG00005027379	lrpprc	99	71.138	Maylandia_zebra
ENSTNIG00000007470	lrpprc	99	50.332	ENSMAUG00000012118	Lrpprc	99	49.815	Mesocricetus_auratus
ENSTNIG00000007470	lrpprc	99	51.625	ENSMICG00000010486	LRPPRC	98	55.198	Microcebus_murinus
ENSTNIG00000007470	lrpprc	99	51.439	ENSMOCG00000006048	Lrpprc	99	50.070	Microtus_ochrogaster
ENSTNIG00000007470	lrpprc	100	70.597	ENSMMOG00000007830	lrpprc	99	70.289	Mola_mola
ENSTNIG00000007470	lrpprc	99	50.735	ENSMODG00000000648	LRPPRC	99	50.735	Monodelphis_domestica
ENSTNIG00000007470	lrpprc	99	67.730	ENSMALG00000001271	lrpprc	99	66.855	Monopterus_albus
ENSTNIG00000007470	lrpprc	99	51.620	ENSMPUG00000011800	LRPPRC	99	52.580	Mustela_putorius_furo
ENSTNIG00000007470	lrpprc	99	52.103	ENSMLUG00000010575	LRPPRC	99	51.317	Myotis_lucifugus
ENSTNIG00000007470	lrpprc	99	50.406	ENSNGAG00000013069	Lrpprc	99	48.842	Nannospalax_galili
ENSTNIG00000007470	lrpprc	99	65.101	ENSNBRG00000013202	lrpprc	92	75.274	Neolamprologus_brichardi
ENSTNIG00000007470	lrpprc	99	50.847	ENSNLEG00000016782	LRPPRC	97	54.702	Nomascus_leucogenys
ENSTNIG00000007470	lrpprc	93	52.542	ENSOPRG00000016774	LRPPRC	89	52.542	Ochotona_princeps
ENSTNIG00000007470	lrpprc	99	50.368	ENSODEG00000011211	LRPPRC	99	49.574	Octodon_degus
ENSTNIG00000007470	lrpprc	100	72.432	ENSONIG00000000917	lrpprc	99	70.676	Oreochromis_niloticus
ENSTNIG00000007470	lrpprc	58	48.586	ENSOANG00000014670	-	100	48.771	Ornithorhynchus_anatinus
ENSTNIG00000007470	lrpprc	99	52.244	ENSOCUG00000015046	LRPPRC	96	51.273	Oryctolagus_cuniculus
ENSTNIG00000007470	lrpprc	100	66.173	ENSORLG00000004605	lrpprc	99	62.903	Oryzias_latipes
ENSTNIG00000007470	lrpprc	96	68.154	ENSORLG00020012536	lrpprc	99	67.937	Oryzias_latipes_hni
ENSTNIG00000007470	lrpprc	100	65.630	ENSORLG00015018270	lrpprc	94	71.630	Oryzias_latipes_hsok
ENSTNIG00000007470	lrpprc	99	51.290	ENSOGAG00000012798	LRPPRC	99	50.282	Otolemur_garnettii
ENSTNIG00000007470	lrpprc	99	51.808	ENSOARG00000006522	LRPPRC	99	50.780	Ovis_aries
ENSTNIG00000007470	lrpprc	99	50.110	ENSPPAG00000040876	LRPPRC	97	54.580	Pan_paniscus
ENSTNIG00000007470	lrpprc	99	52.321	ENSPPRG00000006578	LRPPRC	99	51.425	Panthera_pardus
ENSTNIG00000007470	lrpprc	99	52.469	ENSPTIG00000000933	LRPPRC	96	52.469	Panthera_tigris_altaica
ENSTNIG00000007470	lrpprc	99	50.847	ENSPTRG00000011880	LRPPRC	97	54.563	Pan_troglodytes
ENSTNIG00000007470	lrpprc	99	51.144	ENSPANG00000020731	LRPPRC	98	54.389	Papio_anubis
ENSTNIG00000007470	lrpprc	99	49.365	ENSPKIG00000022232	lrpprc	97	57.256	Paramormyrops_kingsleyae
ENSTNIG00000007470	lrpprc	65	53.494	ENSPSIG00000006830	-	98	53.864	Pelodiscus_sinensis
ENSTNIG00000007470	lrpprc	70	61.105	ENSPMGG00000016597	lrpprc	96	61.736	Periophthalmus_magnuspinnatus
ENSTNIG00000007470	lrpprc	98	45.004	ENSPMAG00000002147	lrpprc	99	45.004	Petromyzon_marinus
ENSTNIG00000007470	lrpprc	99	66.568	ENSPFOG00000011227	lrpprc	99	65.938	Poecilia_formosa
ENSTNIG00000007470	lrpprc	99	66.494	ENSPLAG00000004018	lrpprc	99	65.867	Poecilia_latipinna
ENSTNIG00000007470	lrpprc	99	66.420	ENSPMEG00000016425	lrpprc	99	65.797	Poecilia_mexicana
ENSTNIG00000007470	lrpprc	99	66.346	ENSPREG00000003662	lrpprc	99	65.585	Poecilia_reticulata
ENSTNIG00000007470	lrpprc	61	47.478	ENSPPYG00000029532	-	99	47.767	Pongo_abelii
ENSTNIG00000007470	lrpprc	82	54.080	ENSPCAG00000001430	LRPPRC	84	51.438	Procavia_capensis
ENSTNIG00000007470	lrpprc	99	49.779	ENSPVAG00000002007	LRPPRC	96	49.779	Pteropus_vampyrus
ENSTNIG00000007470	lrpprc	100	65.103	ENSPNYG00000000756	lrpprc	89	75.110	Pundamilia_nyererei
ENSTNIG00000007470	lrpprc	99	64.397	ENSPNAG00000002895	lrpprc	99	62.781	Pygocentrus_nattereri
ENSTNIG00000007470	lrpprc	99	50.517	ENSRNOG00000005877	Lrpprc	99	49.187	Rattus_norvegicus
ENSTNIG00000007470	lrpprc	99	50.551	ENSRBIG00000031552	LRPPRC	99	49.682	Rhinopithecus_bieti
ENSTNIG00000007470	lrpprc	99	51.034	ENSSBOG00000011807	LRPPRC	97	55.172	Saimiri_boliviensis_boliviensis
ENSTNIG00000007470	lrpprc	99	50.111	ENSSHAG00000018725	LRPPRC	99	50.297	Sarcophilus_harrisii
ENSTNIG00000007470	lrpprc	99	56.000	ENSSFOG00015001042	lrpprc	99	54.850	Scleropages_formosus
ENSTNIG00000007470	lrpprc	100	70.067	ENSSDUG00000019062	lrpprc	99	69.204	Seriola_dumerili
ENSTNIG00000007470	lrpprc	100	55.969	ENSSLDG00000023028	lrpprc	99	60.244	Seriola_lalandi_dorsalis
ENSTNIG00000007470	lrpprc	95	48.251	ENSSARG00000000426	LRPPRC	99	48.251	Sorex_araneus
ENSTNIG00000007470	lrpprc	100	61.880	ENSSPAG00000000162	lrpprc	99	61.859	Stegastes_partitus
ENSTNIG00000007470	lrpprc	99	51.882	ENSSSCG00000008452	LRPPRC	99	50.958	Sus_scrofa
ENSTNIG00000007470	lrpprc	98	47.033	ENSTGUG00000003759	LRPPRC	99	47.164	Taeniopygia_guttata
ENSTNIG00000007470	lrpprc	99	84.779	ENSTRUG00000008409	lrpprc	96	82.663	Takifugu_rubripes
ENSTNIG00000007470	lrpprc	99	50.554	ENSTTRG00000006403	LRPPRC	99	49.364	Tursiops_truncatus
ENSTNIG00000007470	lrpprc	99	48.301	ENSVPAG00000008993	LRPPRC	99	48.301	Vicugna_pacos
ENSTNIG00000007470	lrpprc	99	55.776	ENSXETG00000009296	lrpprc	99	54.616	Xenopus_tropicalis
ENSTNIG00000007470	lrpprc	99	62.081	ENSXCOG00000013343	lrpprc	100	63.916	Xiphophorus_couchianus
ENSTNIG00000007470	lrpprc	99	66.963	ENSXMAG00000018108	lrpprc	99	66.196	Xiphophorus_maculatus