EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000007576 (Gene tree)
Gene ID: -
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 3476 bases
Position: chr19:3606288-3609763
Accession: ZDB-GENE-030131-5277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000010387	RRM_1	PF00076.22	7.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000010568	-	1647	-	ENSTNIP00000010387	548 (aa)	-	H3CQ53

Gene Model

Click here to download ENSTNIG00000007576's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000007576's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000007576	cpsf6	76	57.576	ENSG00000149532	CPSF7	100	47.333	Homo_sapiens
ENSTNIG00000007576	cpsf6	94	79.541	ENSG00000111605	CPSF6	88	75.532	Homo_sapiens
ENSTNIG00000007576	cpsf6	94	88.561	ENSACIG00000018413	cpsf6	95	88.376	Amphilophus_citrinellus
ENSTNIG00000007576	cpsf6	94	93.243	ENSAOCG00000017865	cpsf6	94	93.243	Amphiprion_ocellaris
ENSTNIG00000007576	cpsf6	64	47.475	ENSANAG00000024635	CPSF7	69	47.541	Aotus_nancymaae
ENSTNIG00000007576	cpsf6	95	56.647	ENSAMXG00000016745	CPSF6	75	91.515	Astyanax_mexicanus
ENSTNIG00000007576	cpsf6	83	49.721	ENSCJAG00000019282	CPSF7	79	57.432	Callithrix_jacchus
ENSTNIG00000007576	cpsf6	91	78.854	ENSCAFG00000000424	CPSF6	72	78.981	Canis_familiaris
ENSTNIG00000007576	cpsf6	91	79.125	ENSTSYG00000008591	CPSF6	68	88.000	Carlito_syrichta
ENSTNIG00000007576	cpsf6	95	34.128	ENSCATG00000042801	CPSF7	64	45.361	Cercocebus_atys
ENSTNIG00000007576	cpsf6	95	41.045	ENSCGRG00000017954	Cpsf7	73	55.682	Cricetulus_griseus_crigri
ENSTNIG00000007576	cpsf6	94	91.908	ENSCSEG00000008967	cpsf6	94	92.678	Cynoglossus_semilaevis
ENSTNIG00000007576	cpsf6	94	89.210	ENSCVAG00000014857	cpsf6	94	89.210	Cyprinodon_variegatus
ENSTNIG00000007576	cpsf6	63	38.021	ENSCVAG00000007392	CPSF7	66	43.448	Cyprinodon_variegatus
ENSTNIG00000007576	cpsf6	83	50.279	ENSDNOG00000018517	CPSF7	79	58.108	Dasypus_novemcinctus
ENSTNIG00000007576	cpsf6	69	78.341	ENSETEG00000002097	CPSF6	63	78.744	Echinops_telfairi
ENSTNIG00000007576	cpsf6	76	58.333	ENSECAG00000018521	CPSF7	81	58.108	Equus_caballus
ENSTNIG00000007576	cpsf6	83	50.279	ENSFCAG00000013677	CPSF7	81	58.108	Felis_catus
ENSTNIG00000007576	cpsf6	95	34.579	ENSFALG00000011927	CPSF7	76	55.233	Ficedula_albicollis
ENSTNIG00000007576	cpsf6	88	38.945	ENSFDAG00000003919	CPSF7	71	54.237	Fukomys_damarensis
ENSTNIG00000007576	cpsf6	53	95.833	ENSGMOG00000012951	cpsf6	53	95.833	Gadus_morhua
ENSTNIG00000007576	cpsf6	63	53.371	ENSGALG00000040962	CPSF7	63	57.558	Gallus_gallus
ENSTNIG00000007576	cpsf6	94	89.575	ENSGACG00000019685	cpsf6	94	89.961	Gasterosteus_aculeatus
ENSTNIG00000007576	cpsf6	88	37.959	ENSHGLG00100013933	-	73	55.491	Heterocephalus_glaber_male
ENSTNIG00000007576	cpsf6	57	41.259	ENSLBEG00000000947	CPSF7	73	40.000	Labrus_bergylta
ENSTNIG00000007576	cpsf6	75	41.667	ENSLACG00000005542	CPSF7	69	41.026	Latimeria_chalumnae
ENSTNIG00000007576	cpsf6	66	88.623	ENSLOCG00000016190	cpsf6	64	89.759	Lepisosteus_oculatus
ENSTNIG00000007576	cpsf6	95	34.128	ENSMFAG00000001401	CPSF7	64	45.361	Macaca_fascicularis
ENSTNIG00000007576	cpsf6	95	33.026	ENSMNEG00000029585	CPSF7	64	45.361	Macaca_nemestrina
ENSTNIG00000007576	cpsf6	95	34.128	ENSMLEG00000031269	CPSF7	64	45.361	Mandrillus_leucophaeus
ENSTNIG00000007576	cpsf6	94	92.857	ENSMAMG00000010385	cpsf6	94	92.857	Mastacembelus_armatus
ENSTNIG00000007576	cpsf6	65	52.551	ENSMODG00000020364	CPSF7	69	47.486	Monodelphis_domestica
ENSTNIG00000007576	cpsf6	75	95.833	ENSMALG00000014908	cpsf6	75	95.858	Monopterus_albus
ENSTNIG00000007576	cpsf6	53	60.000	ENSMPUG00000014163	CPSF7	62	45.361	Mustela_putorius_furo
ENSTNIG00000007576	cpsf6	68	88.406	ENSMLUG00000028728	-	90	78.182	Myotis_lucifugus
ENSTNIG00000007576	cpsf6	65	53.646	ENSMEUG00000002261	CPSF7	71	54.237	Notamacropus_eugenii
ENSTNIG00000007576	cpsf6	94	70.093	ENSODEG00000004418	-	81	88.953	Octodon_degus
ENSTNIG00000007576	cpsf6	99	40.981	ENSOCUG00000024726	CPSF7	71	52.542	Oryctolagus_cuniculus
ENSTNIG00000007576	cpsf6	56	36.747	ENSORLG00000006495	CPSF7	69	39.773	Oryzias_latipes
ENSTNIG00000007576	cpsf6	56	36.747	ENSORLG00020012657	CPSF7	56	48.276	Oryzias_latipes_hni
ENSTNIG00000007576	cpsf6	56	36.747	ENSORLG00015011091	CPSF7	69	40.678	Oryzias_latipes_hsok
ENSTNIG00000007576	cpsf6	70	37.768	ENSOMEG00000000539	CPSF7	62	38.947	Oryzias_melastigma
ENSTNIG00000007576	cpsf6	99	40.146	ENSOARG00000012937	CPSF7	66	52.542	Ovis_aries
ENSTNIG00000007576	cpsf6	65	52.083	ENSPPAG00000028232	CPSF7	65	45.361	Pan_paniscus
ENSTNIG00000007576	cpsf6	65	52.604	ENSPPRG00000008538	CPSF7	71	53.107	Panthera_pardus
ENSTNIG00000007576	cpsf6	95	34.128	ENSPTRG00000003742	CPSF7	65	45.361	Pan_troglodytes
ENSTNIG00000007576	cpsf6	94	79.541	ENSPANG00000011641	CPSF6	70	79.227	Papio_anubis
ENSTNIG00000007576	cpsf6	93	32.519	ENSPANG00000006037	CPSF7	64	45.361	Papio_anubis
ENSTNIG00000007576	cpsf6	64	46.328	ENSPKIG00000018054	CPSF7	65	45.000	Paramormyrops_kingsleyae
ENSTNIG00000007576	cpsf6	52	85.263	ENSPKIG00000022613	CPSF6	52	85.263	Paramormyrops_kingsleyae
ENSTNIG00000007576	cpsf6	50	42.955	ENSPMAG00000008077	-	68	50.267	Petromyzon_marinus
ENSTNIG00000007576	cpsf6	65	52.551	ENSPCIG00000002551	CPSF7	84	52.222	Phascolarctos_cinereus
ENSTNIG00000007576	cpsf6	94	89.981	ENSPLAG00000005715	cpsf6	94	89.981	Poecilia_latipinna
ENSTNIG00000007576	cpsf6	94	89.981	ENSPMEG00000001353	cpsf6	94	89.981	Poecilia_mexicana
ENSTNIG00000007576	cpsf6	94	87.283	ENSPREG00000004417	cpsf6	94	87.283	Poecilia_reticulata
ENSTNIG00000007576	cpsf6	95	88.846	ENSPNAG00000024098	CPSF6	94	88.632	Pygocentrus_nattereri
ENSTNIG00000007576	cpsf6	59	45.752	ENSPNAG00000015073	CPSF7	67	45.122	Pygocentrus_nattereri
ENSTNIG00000007576	cpsf6	83	49.721	ENSRBIG00000031429	CPSF7	81	57.432	Rhinopithecus_bieti
ENSTNIG00000007576	cpsf6	95	34.128	ENSRROG00000045009	CPSF7	63	45.361	Rhinopithecus_roxellana
ENSTNIG00000007576	cpsf6	62	55.208	ENSSHAG00000011964	CPSF7	68	54.237	Sarcophilus_harrisii
ENSTNIG00000007576	cpsf6	68	41.395	ENSSFOG00015010288	cpsf7	69	46.309	Scleropages_formosus
ENSTNIG00000007576	cpsf6	94	93.436	ENSSDUG00000005024	cpsf6	94	93.436	Seriola_dumerili
ENSTNIG00000007576	cpsf6	94	93.436	ENSSLDG00000009042	cpsf6	94	93.436	Seriola_lalandi_dorsalis
ENSTNIG00000007576	cpsf6	85	82.677	ENSSARG00000006743	CPSF6	69	88.945	Sorex_araneus
ENSTNIG00000007576	cpsf6	83	50.279	ENSSSCG00000013083	CPSF7	75	61.364	Sus_scrofa
ENSTNIG00000007576	cpsf6	63	49.718	ENSTGUG00000006513	CPSF7	74	55.676	Taeniopygia_guttata
ENSTNIG00000007576	cpsf6	100	97.445	ENSTRUG00000016461	cpsf6	100	97.445	Takifugu_rubripes
ENSTNIG00000007576	cpsf6	60	51.562	ENSTTRG00000011085	CPSF7	69	53.107	Tursiops_truncatus
ENSTNIG00000007576	cpsf6	65	52.604	ENSUAMG00000017809	CPSF7	62	45.876	Ursus_americanus
ENSTNIG00000007576	cpsf6	65	52.604	ENSUMAG00000011825	CPSF7	63	45.876	Ursus_maritimus
ENSTNIG00000007576	cpsf6	83	50.279	ENSVVUG00000004939	CPSF7	79	58.108	Vulpes_vulpes
ENSTNIG00000007576	cpsf6	97	40.951	ENSXETG00000006715	cpsf7	65	51.205	Xenopus_tropicalis
ENSTNIG00000007576	cpsf6	94	89.595	ENSXCOG00000013423	cpsf6	94	89.595	Xiphophorus_couchianus