EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000008011 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 7917 bases
Position: chr8:9456163-9464079
Accession: ZDB-GENE-010601-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000003849	Val_tRNA-synt_C	PF10458.9	3.4e-07	1	1
ENSTNIP00000010833	Val_tRNA-synt_C	PF10458.9	3.6e-07	1	1
ENSTNIP00000003849	tRNA-synt_1g	PF09334.11	2.9e-12	1	1
ENSTNIP00000010833	tRNA-synt_1g	PF09334.11	3.4e-12	1	1
ENSTNIP00000003849	Anticodon_1	PF08264.13	2.4e-35	1	1
ENSTNIP00000010833	Anticodon_1	PF08264.13	2.6e-35	1	1
ENSTNIP00000003849	tRNA-synt_1	PF00133.22	4e-207	1	1
ENSTNIP00000010833	tRNA-synt_1	PF00133.22	2.8e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000011015	-	4245	-	ENSTNIP00000010833	1263 (aa)	-	H3CRE9
ENSTNIT00000000804	-	4113	-	ENSTNIP00000003849	1219 (aa)	-	H3C6H9

Gene Model

Click here to download ENSTNIG00000008011's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000008011's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000008011	vars	81	46.753	ENSTNIG00000005916	vars2	92	47.353

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000008011	vars	100	64.969	ENSG00000204394	VARS	99	72.086	Homo_sapiens
ENSTNIG00000008011	vars	98	83.508	ENSAPOG00000020921	vars	96	87.188	Acanthochromis_polyacanthus
ENSTNIG00000008011	vars	98	83.508	ENSAPOG00000020691	vars	96	87.188	Acanthochromis_polyacanthus
ENSTNIG00000008011	vars	100	65.047	ENSAMEG00000006417	VARS	100	65.129	Ailuropoda_melanoleuca
ENSTNIG00000008011	vars	100	87.599	ENSACIG00000013752	vars	100	87.599	Amphilophus_citrinellus
ENSTNIG00000008011	vars	100	87.049	ENSAOCG00000002447	vars	99	87.049	Amphiprion_ocellaris
ENSTNIG00000008011	vars	100	87.206	ENSAPEG00000010638	vars	99	87.206	Amphiprion_percula
ENSTNIG00000008011	vars	100	83.570	ENSATEG00000020219	vars	100	83.491	Anabas_testudineus
ENSTNIG00000008011	vars	87	75.189	ENSACAG00000029133	-	99	71.986	Anolis_carolinensis
ENSTNIG00000008011	vars	100	64.665	ENSANAG00000015453	VARS	100	64.825	Aotus_nancymaae
ENSTNIG00000008011	vars	100	86.854	ENSACLG00000025699	vars	97	86.854	Astatotilapia_calliptera
ENSTNIG00000008011	vars	95	80.050	ENSAMXG00000017716	vars	96	79.967	Astyanax_mexicanus
ENSTNIG00000008011	vars	100	64.812	ENSBTAG00000005631	VARS	100	64.973	Bos_taurus
ENSTNIG00000008011	vars	100	64.380	ENSCJAG00000002604	VARS	100	64.541	Callithrix_jacchus
ENSTNIG00000008011	vars	100	64.784	ENSCAFG00000000636	VARS	100	64.867	Canis_familiaris
ENSTNIG00000008011	vars	94	65.941	ENSCAFG00020020790	VARS	96	66.027	Canis_lupus_dingo
ENSTNIG00000008011	vars	100	64.812	ENSCHIG00000011008	VARS	100	64.973	Capra_hircus
ENSTNIG00000008011	vars	100	64.789	ENSTSYG00000001567	VARS	100	64.949	Carlito_syrichta
ENSTNIG00000008011	vars	95	67.416	ENSCAPG00000013736	VARS	98	67.916	Cavia_aperea
ENSTNIG00000008011	vars	100	64.839	ENSCPOG00000000870	VARS	100	64.476	Cavia_porcellus
ENSTNIG00000008011	vars	100	64.969	ENSCCAG00000035656	VARS	100	64.812	Cebus_capucinus
ENSTNIG00000008011	vars	100	65.412	ENSCATG00000022394	VARS	100	65.415	Cercocebus_atys
ENSTNIG00000008011	vars	96	63.839	ENSCLAG00000009470	VARS	97	63.937	Chinchilla_lanigera
ENSTNIG00000008011	vars	100	65.517	ENSCSAG00000008784	VARS	100	65.520	Chlorocebus_sabaeus
ENSTNIG00000008011	vars	81	74.138	ENSCPBG00000007943	VARS	96	74.540	Chrysemys_picta_bellii
ENSTNIG00000008011	vars	100	65.517	ENSCANG00000033570	VARS	100	65.520	Colobus_angolensis_palliatus
ENSTNIG00000008011	vars	100	64.812	ENSCGRG00001005686	Vars	100	65.051	Cricetulus_griseus_chok1gshd
ENSTNIG00000008011	vars	97	62.305	ENSCGRG00000013352	Vars	78	63.132	Cricetulus_griseus_crigri
ENSTNIG00000008011	vars	100	82.199	ENSCSEG00000019652	vars	100	82.199	Cynoglossus_semilaevis
ENSTNIG00000008011	vars	100	85.681	ENSCVAG00000022398	vars	100	85.681	Cyprinodon_variegatus
ENSTNIG00000008011	vars	100	82.003	ENSDARG00000044575	vars	100	82.003	Danio_rerio
ENSTNIG00000008011	vars	89	67.777	ENSDORG00000016433	Vars	99	67.774	Dipodomys_ordii
ENSTNIG00000008011	vars	71	74.503	ENSETEG00000003824	VARS	77	74.684	Echinops_telfairi
ENSTNIG00000008011	vars	60	65.890	ENSEBUG00000004637	vars	100	65.890	Eptatretus_burgeri
ENSTNIG00000008011	vars	53	73.739	ENSEBUG00000007086	vars	82	73.657	Eptatretus_burgeri
ENSTNIG00000008011	vars	100	65.204	ENSEASG00005015673	VARS	100	65.364	Equus_asinus_asinus
ENSTNIG00000008011	vars	100	65.153	ENSECAG00000014620	VARS	100	65.234	Equus_caballus
ENSTNIG00000008011	vars	75	70.426	ENSEEUG00000004116	VARS	73	70.426	Erinaceus_europaeus
ENSTNIG00000008011	vars	100	81.528	ENSELUG00000006550	vars	97	81.606	Esox_lucius
ENSTNIG00000008011	vars	100	64.863	ENSFCAG00000004510	VARS	100	64.945	Felis_catus
ENSTNIG00000008011	vars	87	69.733	ENSFDAG00000011401	VARS	100	70.200	Fukomys_damarensis
ENSTNIG00000008011	vars	100	84.820	ENSFHEG00000010672	vars	100	84.820	Fundulus_heteroclitus
ENSTNIG00000008011	vars	100	82.616	ENSGMOG00000014908	vars	100	82.778	Gadus_morhua
ENSTNIG00000008011	vars	100	86.129	ENSGAFG00000021630	vars	100	86.129	Gambusia_affinis
ENSTNIG00000008011	vars	100	86.928	ENSGACG00000009601	vars	100	86.928	Gasterosteus_aculeatus
ENSTNIG00000008011	vars	100	65.204	ENSGGOG00000011364	VARS	100	65.207	Gorilla_gorilla
ENSTNIG00000008011	vars	100	86.854	ENSHBUG00000017151	vars	97	86.854	Haplochromis_burtoni
ENSTNIG00000008011	vars	100	64.863	ENSHGLG00000011646	VARS	100	64.863	Heterocephalus_glaber_female
ENSTNIG00000008011	vars	97	60.791	ENSHGLG00100018062	VARS	99	61.175	Heterocephalus_glaber_male
ENSTNIG00000008011	vars	99	83.568	ENSHCOG00000012198	vars	99	83.568	Hippocampus_comes
ENSTNIG00000008011	vars	100	81.142	ENSIPUG00000005218	vars	100	81.221	Ictalurus_punctatus
ENSTNIG00000008011	vars	100	65.047	ENSSTOG00000013112	VARS	100	64.894	Ictidomys_tridecemlineatus
ENSTNIG00000008011	vars	100	52.392	ENSJJAG00000015343	-	100	52.118	Jaculus_jaculus
ENSTNIG00000008011	vars	100	64.012	ENSJJAG00000019749	-	100	64.028	Jaculus_jaculus
ENSTNIG00000008011	vars	100	84.877	ENSKMAG00000009455	vars	100	85.194	Kryptolebias_marmoratus
ENSTNIG00000008011	vars	100	83.531	ENSLBEG00000010341	vars	100	83.531	Labrus_bergylta
ENSTNIG00000008011	vars	94	66.392	ENSLACG00000015232	VARS	99	66.584	Latimeria_chalumnae
ENSTNIG00000008011	vars	100	75.275	ENSLOCG00000004240	vars	100	75.589	Lepisosteus_oculatus
ENSTNIG00000008011	vars	100	64.471	ENSLAFG00000023090	VARS	100	64.471	Loxodonta_africana
ENSTNIG00000008011	vars	100	65.439	ENSMFAG00000001032	VARS	100	65.442	Macaca_fascicularis
ENSTNIG00000008011	vars	100	65.439	ENSMMUG00000006828	VARS	100	65.442	Macaca_mulatta
ENSTNIG00000008011	vars	100	65.439	ENSMNEG00000042072	VARS	100	65.442	Macaca_nemestrina
ENSTNIG00000008011	vars	100	65.361	ENSMLEG00000039307	VARS	100	65.364	Mandrillus_leucophaeus
ENSTNIG00000008011	vars	100	87.107	ENSMAMG00000003949	vars	100	87.264	Mastacembelus_armatus
ENSTNIG00000008011	vars	100	86.933	ENSMZEG00005018327	vars	97	86.933	Maylandia_zebra
ENSTNIG00000008011	vars	100	64.890	ENSMAUG00000006715	Vars	100	65.129	Mesocricetus_auratus
ENSTNIG00000008011	vars	100	64.448	ENSMICG00000003548	VARS	100	64.163	Microcebus_murinus
ENSTNIG00000008011	vars	100	64.000	ENSMOCG00000015404	Vars	100	64.050	Microtus_ochrogaster
ENSTNIG00000008011	vars	100	86.144	ENSMMOG00000015801	vars	100	85.907	Mola_mola
ENSTNIG00000008011	vars	100	64.969	ENSMODG00000015204	-	100	65.023	Monodelphis_domestica
ENSTNIG00000008011	vars	99	86.072	ENSMALG00000022532	vars	99	86.072	Monopterus_albus
ENSTNIG00000008011	vars	100	65.176	MGP_CAROLIEiJ_G0021491	Vars	100	65.176	Mus_caroli
ENSTNIG00000008011	vars	100	65.098	ENSMUSG00000007029	Vars	100	65.098	Mus_musculus
ENSTNIG00000008011	vars	100	65.020	MGP_PahariEiJ_G0020486	Vars	100	65.020	Mus_pahari
ENSTNIG00000008011	vars	100	65.176	MGP_SPRETEiJ_G0022396	Vars	100	65.176	Mus_spretus
ENSTNIG00000008011	vars	100	64.863	ENSMPUG00000010821	VARS	100	64.945	Mustela_putorius_furo
ENSTNIG00000008011	vars	78	68.882	ENSMLUG00000013126	VARS	100	68.675	Myotis_lucifugus
ENSTNIG00000008011	vars	100	64.627	ENSNGAG00000012151	Vars	100	64.890	Nannospalax_galili
ENSTNIG00000008011	vars	100	86.620	ENSNBRG00000020520	vars	100	86.620	Neolamprologus_brichardi
ENSTNIG00000008011	vars	100	64.812	ENSNLEG00000006351	VARS	100	64.973	Nomascus_leucogenys
ENSTNIG00000008011	vars	100	63.129	ENSMEUG00000011378	VARS	95	71.558	Notamacropus_eugenii
ENSTNIG00000008011	vars	100	65.490	ENSOPRG00000003607	VARS	100	65.728	Ochotona_princeps
ENSTNIG00000008011	vars	100	64.230	ENSODEG00000017681	VARS	100	64.364	Octodon_degus
ENSTNIG00000008011	vars	100	87.697	ENSONIG00000013064	vars	100	88.676	Oreochromis_niloticus
ENSTNIG00000008011	vars	77	68.258	ENSOANG00000005400	VARS	98	68.019	Ornithorhynchus_anatinus
ENSTNIG00000008011	vars	100	64.157	ENSOCUG00000022463	VARS	100	63.807	Oryctolagus_cuniculus
ENSTNIG00000008011	vars	100	85.148	ENSORLG00000013063	vars	100	85.148	Oryzias_latipes
ENSTNIG00000008011	vars	100	85.703	ENSORLG00020003504	vars	100	85.703	Oryzias_latipes_hni
ENSTNIG00000008011	vars	100	85.770	ENSORLG00015009001	vars	100	85.848	Oryzias_latipes_hsok
ENSTNIG00000008011	vars	100	85.848	ENSOMEG00000015016	vars	100	85.848	Oryzias_melastigma
ENSTNIG00000008011	vars	100	64.458	ENSOGAG00000007515	VARS	100	64.591	Otolemur_garnettii
ENSTNIG00000008011	vars	50	65.024	ENSOARG00000004625	-	91	65.032	Ovis_aries
ENSTNIG00000008011	vars	100	64.969	ENSPPAG00000034012	VARS	100	65.129	Pan_paniscus
ENSTNIG00000008011	vars	100	64.863	ENSPPRG00000014855	VARS	100	64.945	Panthera_pardus
ENSTNIG00000008011	vars	89	68.474	ENSPTIG00000010462	VARS	95	68.108	Panthera_tigris_altaica
ENSTNIG00000008011	vars	100	64.969	ENSPTRG00000017985	VARS	100	65.129	Pan_troglodytes
ENSTNIG00000008011	vars	100	63.785	ENSPANG00000014565	VARS	100	63.792	Papio_anubis
ENSTNIG00000008011	vars	100	79.393	ENSPKIG00000016304	vars	100	79.393	Paramormyrops_kingsleyae
ENSTNIG00000008011	vars	100	83.135	ENSPMGG00000023909	vars	100	83.135	Periophthalmus_magnuspinnatus
ENSTNIG00000008011	vars	100	64.577	ENSPEMG00000006639	Vars	100	64.816	Peromyscus_maniculatus_bairdii
ENSTNIG00000008011	vars	100	64.734	ENSPCIG00000018553	VARS	100	64.945	Phascolarctos_cinereus
ENSTNIG00000008011	vars	100	85.893	ENSPFOG00000015690	vars	100	85.893	Poecilia_formosa
ENSTNIG00000008011	vars	100	85.658	ENSPLAG00000009590	vars	100	85.658	Poecilia_latipinna
ENSTNIG00000008011	vars	100	85.893	ENSPMEG00000004708	vars	100	85.893	Poecilia_mexicana
ENSTNIG00000008011	vars	95	89.311	ENSPREG00000013264	vars	99	89.311	Poecilia_reticulata
ENSTNIG00000008011	vars	100	63.636	ENSPPYG00000016460	VARS	100	63.643	Pongo_abelii
ENSTNIG00000008011	vars	86	65.071	ENSPCAG00000013565	VARS	86	65.071	Procavia_capensis
ENSTNIG00000008011	vars	100	64.370	ENSPCOG00000010942	VARS	100	64.453	Propithecus_coquereli
ENSTNIG00000008011	vars	100	62.187	ENSPVAG00000012403	VARS	100	62.295	Pteropus_vampyrus
ENSTNIG00000008011	vars	100	86.933	ENSPNYG00000022511	vars	100	86.933	Pundamilia_nyererei
ENSTNIG00000008011	vars	100	81.030	ENSPNAG00000020962	vars	100	81.109	Pygocentrus_nattereri
ENSTNIG00000008011	vars	100	64.890	ENSRNOG00000000867	Vars	100	64.894	Rattus_norvegicus
ENSTNIG00000008011	vars	100	65.439	ENSRBIG00000041669	VARS	100	65.442	Rhinopithecus_bieti
ENSTNIG00000008011	vars	100	65.439	ENSRROG00000045490	VARS	100	65.442	Rhinopithecus_roxellana
ENSTNIG00000008011	vars	100	64.458	ENSSBOG00000035402	VARS	100	64.619	Saimiri_boliviensis_boliviensis
ENSTNIG00000008011	vars	100	63.913	ENSSHAG00000006937	VARS	100	64.336	Sarcophilus_harrisii
ENSTNIG00000008011	vars	100	77.960	ENSSFOG00015014272	vars	99	82.622	Scleropages_formosus
ENSTNIG00000008011	vars	100	84.988	ENSSMAG00000009596	vars	99	84.988	Scophthalmus_maximus
ENSTNIG00000008011	vars	100	87.177	ENSSDUG00000014177	vars	100	87.256	Seriola_dumerili
ENSTNIG00000008011	vars	100	87.099	ENSSLDG00000025316	vars	100	87.177	Seriola_lalandi_dorsalis
ENSTNIG00000008011	vars	100	87.127	ENSSPAG00000017068	vars	100	87.363	Stegastes_partitus
ENSTNIG00000008011	vars	100	64.890	ENSSSCG00000038950	VARS	100	64.973	Sus_scrofa
ENSTNIG00000008011	vars	81	86.693	ENSTRUG00000012307	vars	97	86.523	Takifugu_rubripes
ENSTNIG00000008011	vars	100	59.169	ENSTTRG00000014128	VARS	100	59.169	Tursiops_truncatus
ENSTNIG00000008011	vars	100	63.346	ENSUAMG00000010424	VARS	100	63.432	Ursus_americanus
ENSTNIG00000008011	vars	100	59.436	ENSUMAG00000013486	VARS	100	59.550	Ursus_maritimus
ENSTNIG00000008011	vars	100	64.918	ENSVVUG00000021323	VARS	100	64.660	Vulpes_vulpes
ENSTNIG00000008011	vars	97	67.279	ENSXETG00000024076	vars	100	64.163	Xenopus_tropicalis
ENSTNIG00000008011	vars	100	85.127	ENSXCOG00000019172	vars	100	85.127	Xiphophorus_couchianus
ENSTNIG00000008011	vars	100	85.815	ENSXMAG00000010927	vars	100	85.815	Xiphophorus_maculatus