EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000008252 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 4875 bases
Position: chr18:9815884-9820758
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000011082	RNA_bind	PF08675.11	2.9e-32	1	1
ENSTNIP00000011082	CAF1	PF04857.20	9.8e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000011264	-	1887	-	ENSTNIP00000011082	628 (aa)	-	H3CS48

Gene Model

Click here to download ENSTNIG00000008252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000008252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000008252	parn	100	69.397	ENSG00000140694	PARN	100	79.661	Homo_sapiens
ENSTNIG00000008252	parn	100	68.161	ENSAMEG00000011208	PARN	100	68.006	Ailuropoda_melanoleuca
ENSTNIG00000008252	parn	87	85.091	ENSACIG00000000619	parn	95	80.130	Amphilophus_citrinellus
ENSTNIG00000008252	parn	90	89.982	ENSAOCG00000003465	parn	82	89.279	Amphiprion_ocellaris
ENSTNIG00000008252	parn	78	90.081	ENSAPEG00000010661	parn	94	89.271	Amphiprion_percula
ENSTNIG00000008252	parn	90	89.965	ENSATEG00000004661	parn	83	89.261	Anabas_testudineus
ENSTNIG00000008252	parn	99	69.036	ENSAPLG00000013914	PARN	99	68.906	Anas_platyrhynchos
ENSTNIG00000008252	parn	90	74.188	ENSACAG00000004973	PARN	100	67.884	Anolis_carolinensis
ENSTNIG00000008252	parn	100	69.397	ENSANAG00000031516	PARN	100	79.661	Aotus_nancymaae
ENSTNIG00000008252	parn	100	78.509	ENSACLG00000004742	parn	100	77.924	Astatotilapia_calliptera
ENSTNIG00000008252	parn	100	72.163	ENSAMXG00000012390	parn	100	72.012	Astyanax_mexicanus
ENSTNIG00000008252	parn	100	65.970	ENSBTAG00000018097	PARN	100	67.179	Bos_taurus
ENSTNIG00000008252	parn	100	69.706	ENSCJAG00000015866	PARN	100	79.661	Callithrix_jacchus
ENSTNIG00000008252	parn	100	68.111	ENSCAFG00000018795	PARN	100	67.957	Canis_familiaris
ENSTNIG00000008252	parn	100	68.421	ENSCAFG00020024126	PARN	100	68.266	Canis_lupus_dingo
ENSTNIG00000008252	parn	100	68.421	ENSCHIG00000018143	PARN	100	68.266	Capra_hircus
ENSTNIG00000008252	parn	75	50.936	ENSCAPG00000007984	PARN	78	50.932	Cavia_aperea
ENSTNIG00000008252	parn	100	68.111	ENSCPOG00000002263	PARN	100	67.957	Cavia_porcellus
ENSTNIG00000008252	parn	100	69.397	ENSCCAG00000030367	PARN	100	79.661	Cebus_capucinus
ENSTNIG00000008252	parn	100	66.719	ENSCATG00000041368	PARN	100	79.661	Cercocebus_atys
ENSTNIG00000008252	parn	53	33.793	ENSCATG00000033196	PNLDC1	70	33.793	Cercocebus_atys
ENSTNIG00000008252	parn	100	69.040	ENSCLAG00000015406	PARN	99	68.576	Chinchilla_lanigera
ENSTNIG00000008252	parn	100	69.397	ENSCSAG00000008142	PARN	100	69.243	Chlorocebus_sabaeus
ENSTNIG00000008252	parn	99	54.147	ENSCHOG00000007014	PARN	100	54.147	Choloepus_hoffmanni
ENSTNIG00000008252	parn	80	73.946	ENSCPBG00000006609	PARN	89	73.755	Chrysemys_picta_bellii
ENSTNIG00000008252	parn	82	44.007	ENSCING00000010142	-	99	44.007	Ciona_intestinalis
ENSTNIG00000008252	parn	100	59.394	ENSCANG00000028849	-	100	79.661	Colobus_angolensis_palliatus
ENSTNIG00000008252	parn	100	67.919	ENSCGRG00001012096	Parn	100	67.762	Cricetulus_griseus_chok1gshd
ENSTNIG00000008252	parn	100	67.919	ENSCGRG00000004939	Parn	100	67.762	Cricetulus_griseus_crigri
ENSTNIG00000008252	parn	100	75.907	ENSCSEG00000002064	parn	100	79.091	Cynoglossus_semilaevis
ENSTNIG00000008252	parn	90	87.302	ENSCVAG00000014848	parn	83	86.596	Cyprinodon_variegatus
ENSTNIG00000008252	parn	100	67.884	ENSDARG00000102634	parn	100	67.732	Danio_rerio
ENSTNIG00000008252	parn	100	68.576	ENSDNOG00000000833	PARN	94	76.994	Dasypus_novemcinctus
ENSTNIG00000008252	parn	67	75.000	ENSETEG00000014828	-	69	75.000	Echinops_telfairi
ENSTNIG00000008252	parn	54	53.043	ENSEBUG00000007052	PARN	78	64.000	Eptatretus_burgeri
ENSTNIG00000008252	parn	100	68.266	ENSEASG00005011400	PARN	100	68.266	Equus_asinus_asinus
ENSTNIG00000008252	parn	100	68.421	ENSECAG00000017792	PARN	100	68.421	Equus_caballus
ENSTNIG00000008252	parn	86	64.414	ENSEEUG00000010370	PARN	86	64.414	Erinaceus_europaeus
ENSTNIG00000008252	parn	90	81.404	ENSELUG00000013139	parn	75	81.228	Esox_lucius
ENSTNIG00000008252	parn	100	68.576	ENSFCAG00000044961	PARN	100	77.966	Felis_catus
ENSTNIG00000008252	parn	99	69.146	ENSFALG00000003911	PARN	98	68.545	Ficedula_albicollis
ENSTNIG00000008252	parn	100	67.752	ENSFDAG00000009234	PARN	100	67.597	Fukomys_damarensis
ENSTNIG00000008252	parn	90	78.125	ENSFHEG00000013738	parn	92	89.831	Fundulus_heteroclitus
ENSTNIG00000008252	parn	88	82.396	ENSGMOG00000003231	parn	99	82.396	Gadus_morhua
ENSTNIG00000008252	parn	100	69.051	ENSGALG00000003091	PARN	100	68.062	Gallus_gallus
ENSTNIG00000008252	parn	100	74.746	ENSGAFG00000011061	parn	83	84.737	Gambusia_affinis
ENSTNIG00000008252	parn	100	78.438	ENSGACG00000019501	parn	100	78.717	Gasterosteus_aculeatus
ENSTNIG00000008252	parn	95	71.289	ENSGGOG00000025224	PARN	97	79.661	Gorilla_gorilla
ENSTNIG00000008252	parn	99	83.736	ENSHBUG00000017906	parn	100	79.779	Haplochromis_burtoni
ENSTNIG00000008252	parn	100	67.647	ENSHGLG00000010886	PARN	100	67.337	Heterocephalus_glaber_female
ENSTNIG00000008252	parn	100	67.647	ENSHGLG00100014659	PARN	100	67.337	Heterocephalus_glaber_male
ENSTNIG00000008252	parn	87	81.341	ENSHCOG00000008683	parn	94	80.616	Hippocampus_comes
ENSTNIG00000008252	parn	100	63.102	ENSIPUG00000012401	parn	100	63.158	Ictalurus_punctatus
ENSTNIG00000008252	parn	100	68.731	ENSSTOG00000007519	PARN	100	68.576	Ictidomys_tridecemlineatus
ENSTNIG00000008252	parn	100	69.014	ENSJJAG00000023049	Parn	100	68.858	Jaculus_jaculus
ENSTNIG00000008252	parn	100	75.877	ENSKMAG00000009462	parn	83	87.478	Kryptolebias_marmoratus
ENSTNIG00000008252	parn	90	88.401	ENSLBEG00000009167	parn	89	87.873	Labrus_bergylta
ENSTNIG00000008252	parn	80	73.611	ENSLACG00000004207	PARN	100	72.642	Latimeria_chalumnae
ENSTNIG00000008252	parn	99	76.045	ENSLOCG00000000715	parn	87	76.721	Lepisosteus_oculatus
ENSTNIG00000008252	parn	100	69.688	ENSLAFG00000015036	PARN	100	69.531	Loxodonta_africana
ENSTNIG00000008252	parn	100	65.741	ENSMFAG00000044852	PARN	100	79.661	Macaca_fascicularis
ENSTNIG00000008252	parn	100	69.397	ENSMMUG00000018849	PARN	100	79.661	Macaca_mulatta
ENSTNIG00000008252	parn	100	69.397	ENSMNEG00000045108	PARN	100	79.661	Macaca_nemestrina
ENSTNIG00000008252	parn	100	69.243	ENSMLEG00000031743	PARN	100	79.661	Mandrillus_leucophaeus
ENSTNIG00000008252	parn	90	90.543	ENSMAMG00000006939	parn	83	89.842	Mastacembelus_armatus
ENSTNIG00000008252	parn	99	83.736	ENSMZEG00005013590	parn	100	79.180	Maylandia_zebra
ENSTNIG00000008252	parn	98	67.680	ENSMGAG00000001004	PARN	98	66.772	Meleagris_gallopavo
ENSTNIG00000008252	parn	100	63.426	ENSMAUG00000008025	Parn	100	63.117	Mesocricetus_auratus
ENSTNIG00000008252	parn	53	32.192	ENSMAUG00000012298	Pnldc1	68	31.507	Mesocricetus_auratus
ENSTNIG00000008252	parn	100	69.350	ENSMICG00000016053	PARN	100	77.966	Microcebus_murinus
ENSTNIG00000008252	parn	79	77.576	ENSMOCG00000022211	Parn	100	77.576	Microtus_ochrogaster
ENSTNIG00000008252	parn	100	80.507	ENSMMOG00000011333	parn	100	80.190	Mola_mola
ENSTNIG00000008252	parn	79	80.080	ENSMODG00000004915	PARN	99	80.080	Monodelphis_domestica
ENSTNIG00000008252	parn	88	89.946	ENSMALG00000019426	parn	94	89.228	Monopterus_albus
ENSTNIG00000008252	parn	100	67.919	MGP_CAROLIEiJ_G0020466	Parn	100	67.762	Mus_caroli
ENSTNIG00000008252	parn	100	68.075	ENSMUSG00000022685	Parn	100	76.829	Mus_musculus
ENSTNIG00000008252	parn	100	67.762	MGP_PahariEiJ_G0016172	Parn	100	67.919	Mus_pahari
ENSTNIG00000008252	parn	100	67.919	MGP_SPRETEiJ_G0021361	Parn	100	67.762	Mus_spretus
ENSTNIG00000008252	parn	100	68.731	ENSMPUG00000014464	PARN	100	68.576	Mustela_putorius_furo
ENSTNIG00000008252	parn	79	79.192	ENSMLUG00000005414	PARN	100	79.192	Myotis_lucifugus
ENSTNIG00000008252	parn	88	86.667	ENSNBRG00000006805	parn	93	85.946	Neolamprologus_brichardi
ENSTNIG00000008252	parn	100	69.552	ENSNLEG00000010241	PARN	100	79.661	Nomascus_leucogenys
ENSTNIG00000008252	parn	75	65.574	ENSMEUG00000008178	-	74	65.574	Notamacropus_eugenii
ENSTNIG00000008252	parn	99	64.364	ENSOPRG00000012187	PARN	100	64.006	Ochotona_princeps
ENSTNIG00000008252	parn	100	63.622	ENSODEG00000001617	PARN	100	63.307	Octodon_degus
ENSTNIG00000008252	parn	99	84.219	ENSONIG00000000151	parn	100	78.366	Oreochromis_niloticus
ENSTNIG00000008252	parn	59	65.625	ENSOANG00000020155	-	97	65.803	Ornithorhynchus_anatinus
ENSTNIG00000008252	parn	99	68.906	ENSOCUG00000000322	PARN	99	68.594	Oryctolagus_cuniculus
ENSTNIG00000008252	parn	100	75.074	ENSORLG00020010313	parn	100	75.074	Oryzias_latipes_hni
ENSTNIG00000008252	parn	100	74.926	ENSORLG00015000300	parn	100	74.926	Oryzias_latipes_hsok
ENSTNIG00000008252	parn	100	78.537	ENSOMEG00000019555	parn	97	78.182	Oryzias_melastigma
ENSTNIG00000008252	parn	79	77.218	ENSOGAG00000014626	PARN	100	77.218	Otolemur_garnettii
ENSTNIG00000008252	parn	79	79.596	ENSOARG00000007574	PARN	100	79.596	Ovis_aries
ENSTNIG00000008252	parn	100	69.397	ENSPPAG00000031438	PARN	100	79.661	Pan_paniscus
ENSTNIG00000008252	parn	100	68.576	ENSPPRG00000018583	PARN	100	77.966	Panthera_pardus
ENSTNIG00000008252	parn	100	68.576	ENSPTIG00000012135	PARN	100	77.966	Panthera_tigris_altaica
ENSTNIG00000008252	parn	100	69.243	ENSPTRG00000007792	PARN	100	79.661	Pan_troglodytes
ENSTNIG00000008252	parn	100	67.233	ENSPANG00000020099	PARN	100	79.661	Papio_anubis
ENSTNIG00000008252	parn	96	76.307	ENSPKIG00000022807	parn	90	74.611	Paramormyrops_kingsleyae
ENSTNIG00000008252	parn	90	74.099	ENSPSIG00000014804	PARN	100	67.692	Pelodiscus_sinensis
ENSTNIG00000008252	parn	89	81.640	ENSPMGG00000014431	parn	78	81.996	Periophthalmus_magnuspinnatus
ENSTNIG00000008252	parn	100	66.144	ENSPEMG00000018439	Parn	100	65.987	Peromyscus_maniculatus_bairdii
ENSTNIG00000008252	parn	82	68.654	ENSPMAG00000003956	parn	99	66.298	Petromyzon_marinus
ENSTNIG00000008252	parn	72	68.192	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSTNIG00000008252	parn	100	74.564	ENSPFOG00000012823	parn	83	85.263	Poecilia_formosa
ENSTNIG00000008252	parn	100	74.709	ENSPLAG00000006395	parn	83	85.439	Poecilia_latipinna
ENSTNIG00000008252	parn	100	74.273	ENSPMEG00000007711	parn	83	85.088	Poecilia_mexicana
ENSTNIG00000008252	parn	100	74.273	ENSPREG00000000147	parn	83	85.088	Poecilia_reticulata
ENSTNIG00000008252	parn	100	68.567	ENSPPYG00000007123	PARN	100	68.413	Pongo_abelii
ENSTNIG00000008252	parn	95	59.869	ENSPCAG00000001741	PARN	100	60.196	Procavia_capensis
ENSTNIG00000008252	parn	100	66.873	ENSPCOG00000019292	PARN	100	77.966	Propithecus_coquereli
ENSTNIG00000008252	parn	99	65.728	ENSPVAG00000002547	PARN	100	65.571	Pteropus_vampyrus
ENSTNIG00000008252	parn	100	78.917	ENSPNYG00000006835	parn	100	78.184	Pundamilia_nyererei
ENSTNIG00000008252	parn	93	71.521	ENSPNAG00000018905	parn	100	71.359	Pygocentrus_nattereri
ENSTNIG00000008252	parn	93	70.470	ENSRNOG00000002912	Parn	96	76.531	Rattus_norvegicus
ENSTNIG00000008252	parn	51	62.353	ENSRBIG00000018726	PARN	100	62.059	Rhinopithecus_bieti
ENSTNIG00000008252	parn	51	62.353	ENSRROG00000011162	-	100	62.059	Rhinopithecus_roxellana
ENSTNIG00000008252	parn	100	68.006	ENSSBOG00000034726	PARN	100	79.661	Saimiri_boliviensis_boliviensis
ENSTNIG00000008252	parn	66	78.708	ENSSHAG00000008493	PARN	93	78.708	Sarcophilus_harrisii
ENSTNIG00000008252	parn	63	30.318	ENSSHAG00000015192	PNLDC1	65	30.318	Sarcophilus_harrisii
ENSTNIG00000008252	parn	99	74.482	ENSSFOG00015014165	parn	96	74.252	Scleropages_formosus
ENSTNIG00000008252	parn	90	88.246	ENSSMAG00000000685	parn	100	74.882	Scophthalmus_maximus
ENSTNIG00000008252	parn	90	90.334	ENSSDUG00000014555	parn	83	90.334	Seriola_dumerili
ENSTNIG00000008252	parn	69	78.851	ENSSARG00000014339	PARN	75	78.851	Sorex_araneus
ENSTNIG00000008252	parn	100	68.885	ENSSPUG00000007719	PARN	100	68.731	Sphenodon_punctatus
ENSTNIG00000008252	parn	100	79.565	ENSSPAG00000007095	parn	100	79.245	Stegastes_partitus
ENSTNIG00000008252	parn	100	68.576	ENSSSCG00000007878	PARN	89	68.421	Sus_scrofa
ENSTNIG00000008252	parn	99	68.701	ENSTGUG00000004971	PARN	99	68.594	Taeniopygia_guttata
ENSTNIG00000008252	parn	91	58.262	ENSTBEG00000010407	PARN	100	58.092	Tupaia_belangeri
ENSTNIG00000008252	parn	99	64.632	ENSTTRG00000002843	PARN	100	64.476	Tursiops_truncatus
ENSTNIG00000008252	parn	71	68.736	ENSUAMG00000008283	PARN	94	66.590	Ursus_americanus
ENSTNIG00000008252	parn	100	68.421	ENSUMAG00000004527	PARN	100	68.266	Ursus_maritimus
ENSTNIG00000008252	parn	94	67.822	ENSVPAG00000008968	PARN	98	67.488	Vicugna_pacos
ENSTNIG00000008252	parn	100	68.421	ENSVVUG00000019509	PARN	100	68.266	Vulpes_vulpes
ENSTNIG00000008252	parn	100	67.638	ENSXETG00000010994	parn	98	79.183	Xenopus_tropicalis
ENSTNIG00000008252	parn	90	80.702	ENSXCOG00000015990	parn	95	80.000	Xiphophorus_couchianus
ENSTNIG00000008252	parn	90	85.263	ENSXMAG00000014783	parn	100	73.508	Xiphophorus_maculatus