EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000008271 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 2797 bases
Position: chr18:9531776-9534572
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000011101	PPR	PF01535.20	8.7e-15	1	2
ENSTNIP00000011101	PPR	PF01535.20	8.7e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000011283	-	2016	-	ENSTNIP00000011101	672 (aa)	-	H3CS67

Gene Model

Click here to download ENSTNIG00000008271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000008271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000008271	ptcd1	83	49.236	ENSG00000106246	PTCD1	84	48.993	Homo_sapiens
ENSTNIG00000008271	ptcd1	83	49.236	ENSG00000248919	ATP5MF-PTCD1	78	48.993	Homo_sapiens
ENSTNIG00000008271	ptcd1	86	66.667	ENSAPOG00000010679	ptcd1	90	66.667	Acanthochromis_polyacanthus
ENSTNIG00000008271	ptcd1	83	48.814	ENSAMEG00000006224	-	78	48.814	Ailuropoda_melanoleuca
ENSTNIG00000008271	ptcd1	97	65.030	ENSACIG00000017861	ptcd1	98	65.030	Amphilophus_citrinellus
ENSTNIG00000008271	ptcd1	89	64.812	ENSAOCG00000022617	ptcd1	92	64.812	Amphiprion_ocellaris
ENSTNIG00000008271	ptcd1	97	63.964	ENSAOCG00000020741	-	94	63.964	Amphiprion_ocellaris
ENSTNIG00000008271	ptcd1	99	62.832	ENSAPEG00000022632	ptcd1	94	63.964	Amphiprion_percula
ENSTNIG00000008271	ptcd1	99	64.110	ENSATEG00000007016	ptcd1	95	64.399	Anabas_testudineus
ENSTNIG00000008271	ptcd1	82	49.915	ENSAPLG00000006862	-	93	49.259	Anas_platyrhynchos
ENSTNIG00000008271	ptcd1	85	47.525	ENSACAG00000012871	-	80	47.525	Anolis_carolinensis
ENSTNIG00000008271	ptcd1	88	46.914	ENSANAG00000035790	-	90	47.840	Aotus_nancymaae
ENSTNIG00000008271	ptcd1	99	64.255	ENSACLG00000002824	ptcd1	95	64.255	Astatotilapia_calliptera
ENSTNIG00000008271	ptcd1	85	49.522	ENSAMXG00000037292	ptcd1	88	49.522	Astyanax_mexicanus
ENSTNIG00000008271	ptcd1	90	46.071	ENSBTAG00000020440	-	79	46.296	Bos_taurus
ENSTNIG00000008271	ptcd1	83	49.492	ENSCJAG00000015815	-	91	47.214	Callithrix_jacchus
ENSTNIG00000008271	ptcd1	83	48.718	ENSCAFG00000015055	-	77	48.718	Canis_familiaris
ENSTNIG00000008271	ptcd1	83	48.718	ENSCAFG00020014480	-	77	48.718	Canis_lupus_dingo
ENSTNIG00000008271	ptcd1	90	46.635	ENSCHIG00000027000	-	90	46.635	Capra_hircus
ENSTNIG00000008271	ptcd1	83	47.692	ENSTSYG00000029495	-	83	47.878	Carlito_syrichta
ENSTNIG00000008271	ptcd1	83	49.069	ENSCAPG00000014660	-	93	47.419	Cavia_aperea
ENSTNIG00000008271	ptcd1	83	49.577	ENSCPOG00000001780	-	84	49.003	Cavia_porcellus
ENSTNIG00000008271	ptcd1	83	49.073	ENSCCAG00000034025	-	88	47.923	Cebus_capucinus
ENSTNIG00000008271	ptcd1	83	49.402	ENSCATG00000040859	-	85	48.586	Cercocebus_atys
ENSTNIG00000008271	ptcd1	83	49.662	ENSCLAG00000006354	-	85	48.849	Chinchilla_lanigera
ENSTNIG00000008271	ptcd1	79	48.658	ENSCSAG00000017794	-	86	47.341	Chlorocebus_sabaeus
ENSTNIG00000008271	ptcd1	87	46.071	ENSCPBG00000020866	-	85	46.071	Chrysemys_picta_bellii
ENSTNIG00000008271	ptcd1	88	46.656	ENSCANG00000023441	-	91	46.812	Colobus_angolensis_palliatus
ENSTNIG00000008271	ptcd1	93	45.776	ENSCGRG00001023686	Ptcd1	92	45.776	Cricetulus_griseus_chok1gshd
ENSTNIG00000008271	ptcd1	83	48.387	ENSCGRG00000015031	Ptcd1	83	48.387	Cricetulus_griseus_crigri
ENSTNIG00000008271	ptcd1	97	59.320	ENSCSEG00000002378	ptcd1	93	59.320	Cynoglossus_semilaevis
ENSTNIG00000008271	ptcd1	96	63.400	ENSCVAG00000003621	ptcd1	97	63.400	Cyprinodon_variegatus
ENSTNIG00000008271	ptcd1	99	63.462	ENSCVAG00000015826	ptcd1	95	63.462	Cyprinodon_variegatus
ENSTNIG00000008271	ptcd1	83	52.470	ENSDARG00000076176	ptcd1	84	52.470	Danio_rerio
ENSTNIG00000008271	ptcd1	83	47.377	ENSDNOG00000009957	-	85	46.732	Dasypus_novemcinctus
ENSTNIG00000008271	ptcd1	88	45.039	ENSDORG00000000740	Ptcd1	91	45.283	Dipodomys_ordii
ENSTNIG00000008271	ptcd1	79	38.776	ENSEBUG00000014515	ptcd1	96	37.786	Eptatretus_burgeri
ENSTNIG00000008271	ptcd1	92	46.789	ENSEASG00005002480	-	91	47.720	Equus_asinus_asinus
ENSTNIG00000008271	ptcd1	92	46.789	ENSECAG00000016617	-	91	47.872	Equus_caballus
ENSTNIG00000008271	ptcd1	95	53.690	ENSELUG00000016517	ptcd1	93	53.690	Esox_lucius
ENSTNIG00000008271	ptcd1	92	46.401	ENSFCAG00000015069	-	91	46.554	Felis_catus
ENSTNIG00000008271	ptcd1	82	47.500	ENSFALG00000013803	-	87	46.262	Ficedula_albicollis
ENSTNIG00000008271	ptcd1	83	49.063	ENSFDAG00000006393	-	85	48.590	Fukomys_damarensis
ENSTNIG00000008271	ptcd1	79	67.850	ENSFHEG00000012491	ptcd1	92	67.850	Fundulus_heteroclitus
ENSTNIG00000008271	ptcd1	86	60.336	ENSGMOG00000007639	ptcd1	95	60.336	Gadus_morhua
ENSTNIG00000008271	ptcd1	82	47.667	ENSGALG00000004711	-	84	47.300	Gallus_gallus
ENSTNIG00000008271	ptcd1	89	66.883	ENSGAFG00000013175	ptcd1	90	65.265	Gambusia_affinis
ENSTNIG00000008271	ptcd1	88	69.536	ENSGACG00000016607	ptcd1	94	69.536	Gasterosteus_aculeatus
ENSTNIG00000008271	ptcd1	80	48.063	ENSGAGG00000021832	-	84	48.063	Gopherus_agassizii
ENSTNIG00000008271	ptcd1	83	49.153	ENSGGOG00000015123	-	84	48.911	Gorilla_gorilla
ENSTNIG00000008271	ptcd1	99	63.728	ENSHBUG00000018275	ptcd1	95	63.728	Haplochromis_burtoni
ENSTNIG00000008271	ptcd1	83	50.085	ENSHGLG00000017621	-	85	49.502	Heterocephalus_glaber_female
ENSTNIG00000008271	ptcd1	83	50.085	ENSHGLG00100007218	-	85	49.502	Heterocephalus_glaber_male
ENSTNIG00000008271	ptcd1	94	57.846	ENSHCOG00000010784	ptcd1	93	58.218	Hippocampus_comes
ENSTNIG00000008271	ptcd1	95	46.418	ENSSTOG00000001682	-	93	46.418	Ictidomys_tridecemlineatus
ENSTNIG00000008271	ptcd1	84	48.576	ENSJJAG00000000319	Ptcd1	85	48.911	Jaculus_jaculus
ENSTNIG00000008271	ptcd1	96	62.935	ENSKMAG00000008708	ptcd1	92	62.935	Kryptolebias_marmoratus
ENSTNIG00000008271	ptcd1	99	62.952	ENSLBEG00000008061	ptcd1	96	63.623	Labrus_bergylta
ENSTNIG00000008271	ptcd1	83	50.085	ENSLACG00000011172	ptcd1	82	50.085	Latimeria_chalumnae
ENSTNIG00000008271	ptcd1	88	52.283	ENSLOCG00000004833	ptcd1	92	53.820	Lepisosteus_oculatus
ENSTNIG00000008271	ptcd1	92	46.260	ENSLAFG00000002588	-	92	46.260	Loxodonta_africana
ENSTNIG00000008271	ptcd1	83	49.402	ENSMFAG00000041324	-	85	48.586	Macaca_fascicularis
ENSTNIG00000008271	ptcd1	83	49.231	ENSMMUG00000030408	-	85	48.419	Macaca_mulatta
ENSTNIG00000008271	ptcd1	83	49.060	ENSMNEG00000043786	-	85	48.253	Macaca_nemestrina
ENSTNIG00000008271	ptcd1	83	36.851	ENSMLEG00000031179	-	83	37.710	Mandrillus_leucophaeus
ENSTNIG00000008271	ptcd1	99	63.250	ENSMAMG00000007623	ptcd1	94	63.250	Mastacembelus_armatus
ENSTNIG00000008271	ptcd1	99	64.110	ENSMZEG00005012722	ptcd1	95	64.110	Maylandia_zebra
ENSTNIG00000008271	ptcd1	82	48.223	ENSMGAG00000004211	-	76	48.223	Meleagris_gallopavo
ENSTNIG00000008271	ptcd1	88	45.283	ENSMICG00000017428	-	89	45.912	Microcebus_murinus
ENSTNIG00000008271	ptcd1	99	68.175	ENSMMOG00000020243	ptcd1	94	72.112	Mola_mola
ENSTNIG00000008271	ptcd1	83	48.185	ENSMODG00000001350	-	81	48.185	Monodelphis_domestica
ENSTNIG00000008271	ptcd1	99	62.409	ENSMALG00000018442	ptcd1	95	62.409	Monopterus_albus
ENSTNIG00000008271	ptcd1	93	45.566	MGP_CAROLIEiJ_G0028011	Ptcd1	92	45.566	Mus_caroli
ENSTNIG00000008271	ptcd1	93	45.329	ENSMUSG00000029624	Ptcd1	92	45.329	Mus_musculus
ENSTNIG00000008271	ptcd1	90	45.298	MGP_PahariEiJ_G0024580	Ptcd1	90	45.298	Mus_pahari
ENSTNIG00000008271	ptcd1	93	45.329	MGP_SPRETEiJ_G0029012	Ptcd1	92	45.329	Mus_spretus
ENSTNIG00000008271	ptcd1	83	48.562	ENSMPUG00000016518	-	91	47.222	Mustela_putorius_furo
ENSTNIG00000008271	ptcd1	93	45.195	ENSMLUG00000010994	-	87	45.195	Myotis_lucifugus
ENSTNIG00000008271	ptcd1	97	64.232	ENSNBRG00000010079	ptcd1	96	64.232	Neolamprologus_brichardi
ENSTNIG00000008271	ptcd1	75	48.956	ENSNLEG00000011060	-	87	48.956	Nomascus_leucogenys
ENSTNIG00000008271	ptcd1	87	46.481	ENSMEUG00000006930	-	87	46.481	Notamacropus_eugenii
ENSTNIG00000008271	ptcd1	76	51.181	ENSOPRG00000013647	-	77	52.756	Ochotona_princeps
ENSTNIG00000008271	ptcd1	87	64.860	ENSONIG00000003168	ptcd1	99	64.860	Oreochromis_niloticus
ENSTNIG00000008271	ptcd1	81	47.150	ENSOANG00000007728	-	75	47.150	Ornithorhynchus_anatinus
ENSTNIG00000008271	ptcd1	87	48.780	ENSOCUG00000010584	-	85	48.780	Oryctolagus_cuniculus
ENSTNIG00000008271	ptcd1	87	67.169	ENSORLG00000009275	ptcd1	87	67.169	Oryzias_latipes
ENSTNIG00000008271	ptcd1	87	67.450	ENSORLG00020000988	ptcd1	87	67.450	Oryzias_latipes_hni
ENSTNIG00000008271	ptcd1	87	67.114	ENSORLG00015010557	ptcd1	87	67.114	Oryzias_latipes_hsok
ENSTNIG00000008271	ptcd1	91	66.667	ENSOMEG00000020627	ptcd1	93	66.667	Oryzias_melastigma
ENSTNIG00000008271	ptcd1	83	47.627	ENSOGAG00000010877	-	84	47.475	Otolemur_garnettii
ENSTNIG00000008271	ptcd1	90	43.574	ENSOARG00000018676	-	90	43.574	Ovis_aries
ENSTNIG00000008271	ptcd1	83	48.889	ENSPPAG00000036024	-	84	48.649	Pan_paniscus
ENSTNIG00000008271	ptcd1	92	46.615	ENSPPRG00000003478	-	91	46.615	Panthera_pardus
ENSTNIG00000008271	ptcd1	84	48.490	ENSPTRG00000019452	-	84	48.818	Pan_troglodytes
ENSTNIG00000008271	ptcd1	83	49.573	ENSPANG00000016730	-	85	48.752	Papio_anubis
ENSTNIG00000008271	ptcd1	87	50.968	ENSPKIG00000014215	ptcd1	90	51.452	Paramormyrops_kingsleyae
ENSTNIG00000008271	ptcd1	83	48.205	ENSPSIG00000011184	-	98	48.205	Pelodiscus_sinensis
ENSTNIG00000008271	ptcd1	74	39.885	ENSPMAG00000009667	ptcd1	100	39.885	Petromyzon_marinus
ENSTNIG00000008271	ptcd1	84	47.010	ENSPCIG00000024778	-	83	46.732	Phascolarctos_cinereus
ENSTNIG00000008271	ptcd1	90	66.987	ENSPFOG00000004458	ptcd1	90	65.785	Poecilia_formosa
ENSTNIG00000008271	ptcd1	90	67.042	ENSPLAG00000011051	ptcd1	90	65.785	Poecilia_latipinna
ENSTNIG00000008271	ptcd1	90	66.987	ENSPMEG00000020547	ptcd1	90	65.635	Poecilia_mexicana
ENSTNIG00000008271	ptcd1	89	66.451	ENSPREG00000000059	ptcd1	90	65.469	Poecilia_reticulata
ENSTNIG00000008271	ptcd1	83	47.966	ENSPPYG00000017377	-	88	47.966	Pongo_abelii
ENSTNIG00000008271	ptcd1	74	52.800	ENSPCAG00000001852	-	81	52.800	Procavia_capensis
ENSTNIG00000008271	ptcd1	88	46.880	ENSPCOG00000018596	-	88	47.436	Propithecus_coquereli
ENSTNIG00000008271	ptcd1	59	53.821	ENSPVAG00000007529	-	63	53.821	Pteropus_vampyrus
ENSTNIG00000008271	ptcd1	99	63.873	ENSPNYG00000019993	ptcd1	95	63.873	Pundamilia_nyererei
ENSTNIG00000008271	ptcd1	83	52.667	ENSPNAG00000014931	ptcd1	88	51.535	Pygocentrus_nattereri
ENSTNIG00000008271	ptcd1	87	47.039	ENSRNOG00000000987	Ptcd1	96	44.510	Rattus_norvegicus
ENSTNIG00000008271	ptcd1	83	48.217	ENSRBIG00000043393	-	83	48.387	Rhinopithecus_bieti
ENSTNIG00000008271	ptcd1	83	48.217	ENSRROG00000036420	-	83	48.387	Rhinopithecus_roxellana
ENSTNIG00000008271	ptcd1	88	47.214	ENSSBOG00000024114	-	88	48.154	Saimiri_boliviensis_boliviensis
ENSTNIG00000008271	ptcd1	83	47.856	ENSSHAG00000011376	-	89	47.856	Sarcophilus_harrisii
ENSTNIG00000008271	ptcd1	86	53.473	ENSSFOG00015007909	ptcd1	82	53.473	Scleropages_formosus
ENSTNIG00000008271	ptcd1	87	63.861	ENSSMAG00000000218	ptcd1	95	63.861	Scophthalmus_maximus
ENSTNIG00000008271	ptcd1	99	63.808	ENSSDUG00000015671	ptcd1	99	63.808	Seriola_dumerili
ENSTNIG00000008271	ptcd1	96	64.106	ENSSLDG00000014261	ptcd1	98	61.739	Seriola_lalandi_dorsalis
ENSTNIG00000008271	ptcd1	84	47.463	ENSSPUG00000003540	-	83	47.463	Sphenodon_punctatus
ENSTNIG00000008271	ptcd1	99	64.877	ENSSPAG00000011049	ptcd1	95	64.680	Stegastes_partitus
ENSTNIG00000008271	ptcd1	83	48.810	ENSSSCG00000007622	-	88	48.649	Sus_scrofa
ENSTNIG00000008271	ptcd1	82	47.069	ENSTGUG00000007563	-	94	47.586	Taeniopygia_guttata
ENSTNIG00000008271	ptcd1	99	78.509	ENSTRUG00000013471	ptcd1	95	78.509	Takifugu_rubripes
ENSTNIG00000008271	ptcd1	85	46.569	ENSTBEG00000011021	-	86	46.569	Tupaia_belangeri
ENSTNIG00000008271	ptcd1	89	46.457	ENSTTRG00000003006	-	90	46.457	Tursiops_truncatus
ENSTNIG00000008271	ptcd1	88	45.975	ENSUAMG00000008049	-	91	46.130	Ursus_americanus
ENSTNIG00000008271	ptcd1	91	46.533	ENSVVUG00000008836	-	91	46.533	Vulpes_vulpes
ENSTNIG00000008271	ptcd1	86	45.289	ENSXETG00000009891	ptcd1	86	45.289	Xenopus_tropicalis
ENSTNIG00000008271	ptcd1	90	67.044	ENSXMAG00000015540	ptcd1	90	65.630	Xiphophorus_maculatus