EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTNIG00000008695 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Tetraodon_nigroviridis
Status
putative
Strand
Plus strand
Length
1515 bases
Position
chrUn_random:89560445-89561959
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTNIP00000011544LSMPF01423.222.4e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTNIT00000011726-575-ENSTNIP0000001154488 (aa)-Q4SKV2
Gene Model
Click here to download ENSTNIG00000008695's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000008695's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTNIG00000008695lsm57831.507ENSTNIG00000007373snrpe7731.507
ENSTNIG00000008695lsm58534.667ENSTNIG00000005589lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTNIG00000008695lsm59995.402ENSG00000106355LSM510095.161Homo_sapiens
ENSTNIG00000008695lsm59093.902ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSTNIG00000008695lsm510095.604ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSTNIG00000008695lsm59995.402ENSAMEG00000006700LSM59695.402Ailuropoda_melanoleuca
ENSTNIG00000008695lsm510060.227ENSACIG00000019185lsm510060.227Amphilophus_citrinellus
ENSTNIG00000008695lsm510095.604ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSTNIG00000008695lsm57098.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSTNIG00000008695lsm510095.604ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSTNIG00000008695lsm58897.403ENSATEG00000020470lsm55797.403Anabas_testudineus
ENSTNIG00000008695lsm58495.946ENSAPLG00000008171LSM510095.946Anas_platyrhynchos
ENSTNIG00000008695lsm55996.154ENSACAG00000009530LSM58796.154Anolis_carolinensis
ENSTNIG00000008695lsm59993.103ENSANAG00000024192-9193.103Aotus_nancymaae
ENSTNIG00000008695lsm59996.552ENSANAG00000034409-9696.552Aotus_nancymaae
ENSTNIG00000008695lsm59973.563ENSANAG00000037758-9573.563Aotus_nancymaae
ENSTNIG00000008695lsm510097.727ENSACLG00000012891lsm510097.727Astatotilapia_calliptera
ENSTNIG00000008695lsm59983.333ENSAMXG00000035543lsm59683.333Astyanax_mexicanus
ENSTNIG00000008695lsm59995.402ENSBTAG00000002332LSM59695.402Bos_taurus
ENSTNIG00000008695lsm55075.000ENSBTAG00000052014-5875.000Bos_taurus
ENSTNIG00000008695lsm59973.563WBGene00003079lsm-59673.563Caenorhabditis_elegans
ENSTNIG00000008695lsm59982.759ENSCJAG00000005678-9782.759Callithrix_jacchus
ENSTNIG00000008695lsm59995.402ENSCJAG00000047379LSM57587.500Callithrix_jacchus
ENSTNIG00000008695lsm59994.253ENSCAFG00000019261-9694.253Canis_familiaris
ENSTNIG00000008695lsm55289.130ENSCAFG00000030781-5389.130Canis_familiaris
ENSTNIG00000008695lsm59995.402ENSCAFG00020004946LSM59695.402Canis_lupus_dingo
ENSTNIG00000008695lsm59995.402ENSCHIG00000024539LSM59695.402Capra_hircus
ENSTNIG00000008695lsm58074.286ENSCHIG00000021428-9171.429Capra_hircus
ENSTNIG00000008695lsm59993.103ENSCHIG00000004079-9693.103Capra_hircus
ENSTNIG00000008695lsm59977.011ENSTSYG00000026530-8777.011Carlito_syrichta
ENSTNIG00000008695lsm59995.402ENSTSYG00000006449-9695.402Carlito_syrichta
ENSTNIG00000008695lsm59982.759ENSTSYG00000028728-9582.759Carlito_syrichta
ENSTNIG00000008695lsm59970.115ENSTSYG00000036637-9570.115Carlito_syrichta
ENSTNIG00000008695lsm58589.333ENSCAPG00000006980LSM510089.333Cavia_aperea
ENSTNIG00000008695lsm59995.402ENSCPOG00000036386LSM59695.402Cavia_porcellus
ENSTNIG00000008695lsm59994.253ENSCCAG00000000821-9694.253Cebus_capucinus
ENSTNIG00000008695lsm59975.862ENSCCAG00000032792-9575.862Cebus_capucinus
ENSTNIG00000008695lsm59995.402ENSCCAG00000037808-9695.402Cebus_capucinus
ENSTNIG00000008695lsm59964.368ENSCCAG00000037334-9564.368Cebus_capucinus
ENSTNIG00000008695lsm59993.103ENSCCAG00000032123-9693.103Cebus_capucinus
ENSTNIG00000008695lsm59985.057ENSCATG00000014790-9094.231Cercocebus_atys
ENSTNIG00000008695lsm59995.402ENSCATG00000040218LSM510095.161Cercocebus_atys
ENSTNIG00000008695lsm59982.759ENSCLAG00000005062-8682.759Chinchilla_lanigera
ENSTNIG00000008695lsm59995.402ENSCLAG00000000202LSM59695.402Chinchilla_lanigera
ENSTNIG00000008695lsm58195.775ENSCHOG00000005335LSM59395.775Choloepus_hoffmanni
ENSTNIG00000008695lsm59995.402ENSCPBG00000013685LSM59695.402Chrysemys_picta_bellii
ENSTNIG00000008695lsm59887.209ENSCING00000020625-9787.209Ciona_intestinalis
ENSTNIG00000008695lsm59887.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSTNIG00000008695lsm59995.402ENSCANG00000039909LSM510095.161Colobus_angolensis_palliatus
ENSTNIG00000008695lsm59995.402ENSCGRG00001015461Lsm59695.402Cricetulus_griseus_chok1gshd
ENSTNIG00000008695lsm58596.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSTNIG00000008695lsm59859.302ENSCSEG00000015286lsm59259.302Cynoglossus_semilaevis
ENSTNIG00000008695lsm59898.837ENSCVAG00000004262lsm59598.837Cyprinodon_variegatus
ENSTNIG00000008695lsm510095.455ENSDARG00000071573lsm510096.774Danio_rerio
ENSTNIG00000008695lsm59484.337ENSDNOG00000049495-9184.337Dasypus_novemcinctus
ENSTNIG00000008695lsm59995.402ENSDNOG00000034958LSM59695.402Dasypus_novemcinctus
ENSTNIG00000008695lsm59995.402ENSDORG00000009422Lsm59695.402Dipodomys_ordii
ENSTNIG00000008695lsm59582.143FBgn0035675CG66109282.143Drosophila_melanogaster
ENSTNIG00000008695lsm59995.402ENSETEG00000018068LSM59695.402Echinops_telfairi
ENSTNIG00000008695lsm59972.414ENSETEG00000001469-9572.414Echinops_telfairi
ENSTNIG00000008695lsm59876.744ENSETEG00000010651-9576.744Echinops_telfairi
ENSTNIG00000008695lsm58477.027ENSETEG00000016074-9877.027Echinops_telfairi
ENSTNIG00000008695lsm59763.529ENSETEG00000000777-9463.529Echinops_telfairi
ENSTNIG00000008695lsm59894.186ENSEBUG00000008540lsm59594.186Eptatretus_burgeri
ENSTNIG00000008695lsm59995.402ENSEASG00005003500LSM59695.402Equus_asinus_asinus
ENSTNIG00000008695lsm59981.609ENSECAG00000018445LSM59581.609Equus_caballus
ENSTNIG00000008695lsm56591.228ENSEEUG00000004102LSM59591.228Erinaceus_europaeus
ENSTNIG00000008695lsm59897.674ENSELUG00000007792lsm59597.674Esox_lucius
ENSTNIG00000008695lsm59995.402ENSFCAG00000000230LSM59695.402Felis_catus
ENSTNIG00000008695lsm58696.053ENSFALG00000001892LSM59296.053Ficedula_albicollis
ENSTNIG00000008695lsm59995.402ENSFDAG00000008767LSM59695.402Fukomys_damarensis
ENSTNIG00000008695lsm59365.854ENSFDAG00000008685-9765.854Fukomys_damarensis
ENSTNIG00000008695lsm59880.460ENSFHEG00000004011lsm59480.460Fundulus_heteroclitus
ENSTNIG00000008695lsm59798.824ENSGMOG00000018235lsm59498.824Gadus_morhua
ENSTNIG00000008695lsm59995.402ENSGALG00000041625LSM59695.402Gallus_gallus
ENSTNIG00000008695lsm57098.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSTNIG00000008695lsm510095.604ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSTNIG00000008695lsm59995.402ENSGAGG00000015593LSM59695.402Gopherus_agassizii
ENSTNIG00000008695lsm59995.402ENSGGOG00000043469LSM59695.402Gorilla_gorilla
ENSTNIG00000008695lsm510097.727ENSHBUG00000013773lsm510097.727Haplochromis_burtoni
ENSTNIG00000008695lsm59995.402ENSHGLG00000011765LSM59695.402Heterocephalus_glaber_female
ENSTNIG00000008695lsm59991.954ENSHGLG00100015610LSM59691.954Heterocephalus_glaber_male
ENSTNIG00000008695lsm59860.465ENSHCOG00000008288lsm59260.465Hippocampus_comes
ENSTNIG00000008695lsm59896.512ENSIPUG00000021095LSM59596.512Ictalurus_punctatus
ENSTNIG00000008695lsm59976.404ENSSTOG00000033886-10076.404Ictidomys_tridecemlineatus
ENSTNIG00000008695lsm59995.402ENSSTOG00000012662LSM59695.402Ictidomys_tridecemlineatus
ENSTNIG00000008695lsm58590.667ENSJJAG00000004475-9590.667Jaculus_jaculus
ENSTNIG00000008695lsm59966.667ENSJJAG00000016144-8766.667Jaculus_jaculus
ENSTNIG00000008695lsm59995.402ENSJJAG00000012145-9695.402Jaculus_jaculus
ENSTNIG00000008695lsm510095.604ENSKMAG00000021861lsm510095.604Kryptolebias_marmoratus
ENSTNIG00000008695lsm59889.535ENSLBEG00000009235LSM56689.535Labrus_bergylta
ENSTNIG00000008695lsm55886.275ENSLBEG00000017379lsm58486.275Labrus_bergylta
ENSTNIG00000008695lsm59996.552ENSLACG00000022448LSM59696.552Latimeria_chalumnae
ENSTNIG00000008695lsm59897.674ENSLOCG00000012903lsm59597.674Lepisosteus_oculatus
ENSTNIG00000008695lsm59870.930ENSLAFG00000027938-9470.930Loxodonta_africana
ENSTNIG00000008695lsm59995.402ENSLAFG00000029579LSM59695.402Loxodonta_africana
ENSTNIG00000008695lsm55193.333ENSMFAG00000031187-7693.333Macaca_fascicularis
ENSTNIG00000008695lsm59993.103ENSMFAG00000030152-9693.103Macaca_fascicularis
ENSTNIG00000008695lsm59995.402ENSMFAG00000038508LSM59695.402Macaca_fascicularis
ENSTNIG00000008695lsm59993.103ENSMMUG00000030131-9693.103Macaca_mulatta
ENSTNIG00000008695lsm55587.500ENSMMUG00000045129-7587.500Macaca_mulatta
ENSTNIG00000008695lsm59986.207ENSMMUG00000039822-9686.207Macaca_mulatta
ENSTNIG00000008695lsm59995.402ENSMNEG00000015331LSM510095.161Macaca_nemestrina
ENSTNIG00000008695lsm59993.103ENSMNEG00000037935-9693.103Macaca_nemestrina
ENSTNIG00000008695lsm59995.402ENSMLEG00000024945LSM59695.402Mandrillus_leucophaeus
ENSTNIG00000008695lsm59985.057ENSMLEG00000034037-9885.057Mandrillus_leucophaeus
ENSTNIG00000008695lsm510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSTNIG00000008695lsm510097.727ENSMZEG00005019554lsm510097.727Maylandia_zebra
ENSTNIG00000008695lsm59995.402ENSMGAG00000012117LSM59695.402Meleagris_gallopavo
ENSTNIG00000008695lsm59994.253ENSMAUG00000008132-9694.253Mesocricetus_auratus
ENSTNIG00000008695lsm59995.402ENSMAUG00000012222Lsm59695.402Mesocricetus_auratus
ENSTNIG00000008695lsm59995.402ENSMICG00000005353LSM59695.402Microcebus_murinus
ENSTNIG00000008695lsm59973.563ENSMICG00000033928-9273.563Microcebus_murinus
ENSTNIG00000008695lsm59995.402ENSMOCG00000012018Lsm59695.402Microtus_ochrogaster
ENSTNIG00000008695lsm58698.684ENSMMOG00000004026lsm58798.684Mola_mola
ENSTNIG00000008695lsm57095.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSTNIG00000008695lsm57091.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSTNIG00000008695lsm59995.402MGP_CAROLIEiJ_G0028421Lsm510095.238Mus_caroli
ENSTNIG00000008695lsm59995.402ENSMUSG00000091625Lsm510095.238Mus_musculus
ENSTNIG00000008695lsm59995.402MGP_PahariEiJ_G0022171Lsm510095.238Mus_pahari
ENSTNIG00000008695lsm59995.402MGP_SPRETEiJ_G0029423Lsm510095.238Mus_spretus
ENSTNIG00000008695lsm59995.402ENSMLUG00000017028LSM59695.402Myotis_lucifugus
ENSTNIG00000008695lsm59974.713ENSNGAG00000022569-9374.713Nannospalax_galili
ENSTNIG00000008695lsm59983.146ENSNGAG00000017707-9583.146Nannospalax_galili
ENSTNIG00000008695lsm59995.402ENSNGAG00000024142Lsm59695.402Nannospalax_galili
ENSTNIG00000008695lsm56596.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSTNIG00000008695lsm55293.478ENSNBRG00000009964LSM59893.478Neolamprologus_brichardi
ENSTNIG00000008695lsm59995.402ENSNLEG00000015268LSM59695.402Nomascus_leucogenys
ENSTNIG00000008695lsm58596.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSTNIG00000008695lsm59995.402ENSODEG00000008258-9695.402Octodon_degus
ENSTNIG00000008695lsm59995.402ENSODEG00000019072-9695.402Octodon_degus
ENSTNIG00000008695lsm58560.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSTNIG00000008695lsm59995.402ENSOCUG00000029043LSM59695.402Oryctolagus_cuniculus
ENSTNIG00000008695lsm510094.505ENSORLG00000027725lsm55894.505Oryzias_latipes
ENSTNIG00000008695lsm59590.805ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSTNIG00000008695lsm510094.505ENSORLG00015003338lsm510094.505Oryzias_latipes_hsok
ENSTNIG00000008695lsm510094.505ENSOMEG00000001078lsm510094.505Oryzias_melastigma
ENSTNIG00000008695lsm59995.402ENSOGAG00000013892LSM59695.402Otolemur_garnettii
ENSTNIG00000008695lsm59995.402ENSOARG00000006944LSM59695.402Ovis_aries
ENSTNIG00000008695lsm59995.402ENSPPAG00000003697-9695.402Pan_paniscus
ENSTNIG00000008695lsm59995.402ENSPPRG00000002550LSM59695.402Panthera_pardus
ENSTNIG00000008695lsm59995.402ENSPTIG00000015604LSM59695.402Panthera_tigris_altaica
ENSTNIG00000008695lsm59979.310ENSPTRG00000049488-9581.609Pan_troglodytes
ENSTNIG00000008695lsm59995.402ENSPTRG00000019057LSM59695.402Pan_troglodytes
ENSTNIG00000008695lsm59986.207ENSPANG00000032538-9686.207Papio_anubis
ENSTNIG00000008695lsm59991.954ENSPANG00000033477-9691.954Papio_anubis
ENSTNIG00000008695lsm59995.402ENSPANG00000032179-9695.402Papio_anubis
ENSTNIG00000008695lsm59897.674ENSPKIG00000011910lsm59597.674Paramormyrops_kingsleyae
ENSTNIG00000008695lsm58495.946ENSPSIG00000014796LSM510095.946Pelodiscus_sinensis
ENSTNIG00000008695lsm57098.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSTNIG00000008695lsm59967.816ENSPEMG00000022375-9567.816Peromyscus_maniculatus_bairdii
ENSTNIG00000008695lsm59898.837ENSPFOG00000001433lsm59598.837Poecilia_formosa
ENSTNIG00000008695lsm59898.837ENSPLAG00000009665lsm59598.837Poecilia_latipinna
ENSTNIG00000008695lsm59898.837ENSPMEG00000022265lsm59598.837Poecilia_mexicana
ENSTNIG00000008695lsm57098.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSTNIG00000008695lsm59991.954ENSPPYG00000017661LSM59691.954Pongo_abelii
ENSTNIG00000008695lsm58896.104ENSPCAG00000013740LSM59596.104Procavia_capensis
ENSTNIG00000008695lsm59995.402ENSPVAG00000009786LSM59695.402Pteropus_vampyrus
ENSTNIG00000008695lsm510097.727ENSPNYG00000022236lsm510097.727Pundamilia_nyererei
ENSTNIG00000008695lsm59896.512ENSPNAG00000001887lsm59596.512Pygocentrus_nattereri
ENSTNIG00000008695lsm59995.402ENSRNOG00000042126Lsm59695.402Rattus_norvegicus
ENSTNIG00000008695lsm510090.217ENSRNOG00000027305AABR07065089.110090.217Rattus_norvegicus
ENSTNIG00000008695lsm59994.253ENSRBIG00000024431-9694.253Rhinopithecus_bieti
ENSTNIG00000008695lsm59995.402ENSRBIG00000030714-9695.402Rhinopithecus_bieti
ENSTNIG00000008695lsm59995.402ENSRBIG00000027803-10095.161Rhinopithecus_bieti
ENSTNIG00000008695lsm59995.402ENSRBIG00000030340-9695.402Rhinopithecus_bieti
ENSTNIG00000008695lsm59995.402ENSRROG00000004655-9695.402Rhinopithecus_roxellana
ENSTNIG00000008695lsm59995.402ENSRROG00000023884-9695.402Rhinopithecus_roxellana
ENSTNIG00000008695lsm59995.402ENSRROG00000042782-10095.161Rhinopithecus_roxellana
ENSTNIG00000008695lsm58847.561YER146W-8847.561Saccharomyces_cerevisiae
ENSTNIG00000008695lsm59995.402ENSSBOG00000012312LSM59695.402Saimiri_boliviensis_boliviensis
ENSTNIG00000008695lsm59994.253ENSSBOG00000019124-9694.253Saimiri_boliviensis_boliviensis
ENSTNIG00000008695lsm59972.414ENSSBOG00000034794-9572.414Saimiri_boliviensis_boliviensis
ENSTNIG00000008695lsm59897.674ENSSFOG00015010099lsm59597.674Scleropages_formosus
ENSTNIG00000008695lsm510059.341ENSSMAG00000007895lsm510059.341Scophthalmus_maximus
ENSTNIG00000008695lsm57098.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSTNIG00000008695lsm58975.641ENSSLDG00000008014-9375.641Seriola_lalandi_dorsalis
ENSTNIG00000008695lsm59898.837ENSSLDG00000025242lsm59598.837Seriola_lalandi_dorsalis
ENSTNIG00000008695lsm59967.816ENSSARG00000003330LSM59667.816Sorex_araneus
ENSTNIG00000008695lsm59994.253ENSSPUG00000002690LSM510093.548Sphenodon_punctatus
ENSTNIG00000008695lsm510059.341ENSSPAG00000005435lsm510059.341Stegastes_partitus
ENSTNIG00000008695lsm59995.402ENSSSCG00000026064-9695.402Sus_scrofa
ENSTNIG00000008695lsm57484.615ENSSSCG00000029661-9084.615Sus_scrofa
ENSTNIG00000008695lsm59994.253ENSTGUG00000017539LSM59694.253Taeniopygia_guttata
ENSTNIG00000008695lsm59091.667ENSTRUG00000017749lsm56591.667Takifugu_rubripes
ENSTNIG00000008695lsm59995.402ENSTBEG00000004876LSM59695.402Tupaia_belangeri
ENSTNIG00000008695lsm59995.402ENSTTRG00000004237LSM59695.402Tursiops_truncatus
ENSTNIG00000008695lsm55587.500ENSUAMG00000009786LSM56287.500Ursus_americanus
ENSTNIG00000008695lsm59994.253ENSUMAG00000002625LSM56394.253Ursus_maritimus
ENSTNIG00000008695lsm59995.402ENSVPAG00000009985LSM59695.402Vicugna_pacos
ENSTNIG00000008695lsm59995.402ENSVVUG00000021311LSM59695.402Vulpes_vulpes
ENSTNIG00000008695lsm59092.683ENSXETG00000026465lsm510092.683Xenopus_tropicalis
ENSTNIG00000008695lsm57098.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSTNIG00000008695lsm59898.837ENSXMAG00000029988lsm59598.837Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us