EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTNIG00000009153 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1b
Alias
-
Full Name
poly A binding protein%2C cytoplasmic 1 b
Gene Type
protein_coding
Species
Tetraodon_nigroviridis
Status
putative
Strand
Plus strand
Length
4936 bases
Position
chr21:1680678-1685613
Accession
ZDB-GENE-050308-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTNIP00000012014PABPPF00658.181.4e-2911
ENSTNIP00000012014RRM_5PF13893.63.6e-0912
ENSTNIP00000012014RRM_5PF13893.63.6e-0922
ENSTNIP00000012014RRM_1PF00076.228.5e-9014
ENSTNIP00000012014RRM_1PF00076.228.5e-9024
ENSTNIP00000012014RRM_1PF00076.228.5e-9034
ENSTNIP00000012014RRM_1PF00076.228.5e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTNIT00000012204-1917-ENSTNIP00000012014638 (aa)-H3CUT0
Gene Model
Click here to download ENSTNIG00000009153's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000009153's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTNIG00000009153pabpc1b6040.000ENSTNIG00000017904rbm39b5340.000
ENSTNIG00000009153pabpc1b9966.770ENSTNIG00000017903pabpc1l10066.770
ENSTNIG00000009153pabpc1b5836.145ENSTNIG00000015485elavl48736.145
ENSTNIG00000009153pabpc1b5933.684ENSTNIG00000016496RBMS15433.684
ENSTNIG00000009153pabpc1b5837.349ENSTNIG00000011312elavl28837.349
ENSTNIG00000009153pabpc1b9971.894ENSTNIG00000016902pabpc49971.894
ENSTNIG00000009153pabpc1b5534.091ENSTNIG00000007201-5734.884
ENSTNIG00000009153pabpc1b5435.227ENSTNIG00000016009-5536.047
ENSTNIG00000009153pabpc1b5837.349ENSTNIG00000018572elavl39037.349
ENSTNIG00000009153pabpc1b10084.105ENSTNIG00000013307pabpc1a10084.259
ENSTNIG00000009153pabpc1b5734.177ENSTNIG00000013091TIAL18234.177
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTNIG00000009153pabpc1b5880.612ENSG00000186288PABPC1L2A9880.612Homo_sapiens
ENSTNIG00000009153pabpc1b5880.612ENSG00000184388PABPC1L2B9880.612Homo_sapiens
ENSTNIG00000009153pabpc1b10092.006ENSAPOG00000017776pabpc1b10092.006Acanthochromis_polyacanthus
ENSTNIG00000009153pabpc1b10086.916ENSAPOG00000015105pabpc1a10086.916Acanthochromis_polyacanthus
ENSTNIG00000009153pabpc1b5980.612ENSAMEG00000019441-9880.612Ailuropoda_melanoleuca
ENSTNIG00000009153pabpc1b10086.604ENSACIG00000004685pabpc1a10086.604Amphilophus_citrinellus
ENSTNIG00000009153pabpc1b10086.991ENSACIG00000018366pabpc1b10086.991Amphilophus_citrinellus
ENSTNIG00000009153pabpc1b10091.379ENSAOCG00000019839pabpc1b10091.379Amphiprion_ocellaris
ENSTNIG00000009153pabpc1b10086.293ENSAOCG00000011656pabpc1a10086.916Amphiprion_ocellaris
ENSTNIG00000009153pabpc1b10086.293ENSAPEG00000006963pabpc1a10086.916Amphiprion_percula
ENSTNIG00000009153pabpc1b10091.379ENSAPEG00000010435pabpc1b10091.379Amphiprion_percula
ENSTNIG00000009153pabpc1b10086.137ENSATEG00000024852pabpc1a10086.760Anabas_testudineus
ENSTNIG00000009153pabpc1b10091.250ENSATEG00000012917pabpc1b10091.406Anabas_testudineus
ENSTNIG00000009153pabpc1b5880.612ENSANAG00000019431-9880.612Aotus_nancymaae
ENSTNIG00000009153pabpc1b5880.612ENSANAG00000019429-9880.612Aotus_nancymaae
ENSTNIG00000009153pabpc1b10090.596ENSACLG00000014335pabpc1b10090.596Astatotilapia_calliptera
ENSTNIG00000009153pabpc1b10086.604ENSACLG00000009399pabpc1a10088.341Astatotilapia_calliptera
ENSTNIG00000009153pabpc1b10090.125ENSAMXG00000008599pabpc1b10090.125Astyanax_mexicanus
ENSTNIG00000009153pabpc1b5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSTNIG00000009153pabpc1b5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSTNIG00000009153pabpc1b5880.612ENSCJAG00000041326-9880.612Callithrix_jacchus
ENSTNIG00000009153pabpc1b5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSTNIG00000009153pabpc1b5880.612ENSCHIG00000006283-9880.612Capra_hircus
ENSTNIG00000009153pabpc1b5880.612ENSCHIG00000011138-9880.612Capra_hircus
ENSTNIG00000009153pabpc1b5880.612ENSTSYG00000001775-9880.612Carlito_syrichta
ENSTNIG00000009153pabpc1b5880.612ENSCPOG00000009525-9880.612Cavia_porcellus
ENSTNIG00000009153pabpc1b5880.612ENSCCAG00000031524-9880.612Cebus_capucinus
ENSTNIG00000009153pabpc1b5880.612ENSCATG00000043125-9880.612Cercocebus_atys
ENSTNIG00000009153pabpc1b5880.612ENSCATG00000042826-9880.612Cercocebus_atys
ENSTNIG00000009153pabpc1b5879.592ENSCLAG00000017409-9879.592Chinchilla_lanigera
ENSTNIG00000009153pabpc1b5879.592ENSCLAG00000017412-9879.592Chinchilla_lanigera
ENSTNIG00000009153pabpc1b5880.612ENSCSAG00000000102-9880.612Chlorocebus_sabaeus
ENSTNIG00000009153pabpc1b5780.663ENSCGRG00001023387-9678.351Cricetulus_griseus_chok1gshd
ENSTNIG00000009153pabpc1b10088.401ENSCSEG00000015241-10088.401Cynoglossus_semilaevis
ENSTNIG00000009153pabpc1b9986.207ENSCSEG00000013324pabpc1a10086.834Cynoglossus_semilaevis
ENSTNIG00000009153pabpc1b10086.449ENSCVAG00000021872pabpc1a10086.449Cyprinodon_variegatus
ENSTNIG00000009153pabpc1b10089.671ENSCVAG00000005489pabpc1b10089.671Cyprinodon_variegatus
ENSTNIG00000009153pabpc1b10090.125ENSDARG00000021140pabpc1b9992.908Danio_rerio
ENSTNIG00000009153pabpc1b10087.324ENSDARG00000017219pabpc1a10087.324Danio_rerio
ENSTNIG00000009153pabpc1b5880.952ENSDNOG00000030926-9879.082Dasypus_novemcinctus
ENSTNIG00000009153pabpc1b5879.082ENSDORG00000011362-9879.082Dipodomys_ordii
ENSTNIG00000009153pabpc1b5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSTNIG00000009153pabpc1b5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSTNIG00000009153pabpc1b5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSTNIG00000009153pabpc1b10088.456ENSELUG00000015062-10088.456Esox_lucius
ENSTNIG00000009153pabpc1b5958.190ENSELUG00000005389-9758.190Esox_lucius
ENSTNIG00000009153pabpc1b9987.344ENSELUG00000003614pabpc1a10087.344Esox_lucius
ENSTNIG00000009153pabpc1b5880.612ENSFCAG00000039701-9880.612Felis_catus
ENSTNIG00000009153pabpc1b5880.612ENSFDAG00000005484-9880.612Fukomys_damarensis
ENSTNIG00000009153pabpc1b10085.981ENSFHEG00000018979pabpc1a10086.604Fundulus_heteroclitus
ENSTNIG00000009153pabpc1b10089.812ENSFHEG00000008186pabpc1b10090.125Fundulus_heteroclitus
ENSTNIG00000009153pabpc1b10082.115ENSGMOG00000002448-10082.115Gadus_morhua
ENSTNIG00000009153pabpc1b9986.025ENSGMOG00000013448pabpc1a9986.180Gadus_morhua
ENSTNIG00000009153pabpc1b10090.596ENSGAFG00000010193pabpc1b10090.909Gambusia_affinis
ENSTNIG00000009153pabpc1b10086.137ENSGAFG00000019750pabpc1a10086.604Gambusia_affinis
ENSTNIG00000009153pabpc1b10089.114ENSGACG00000003771pabpc1b10089.736Gasterosteus_aculeatus
ENSTNIG00000009153pabpc1b10087.383ENSGACG00000003572pabpc1a10087.383Gasterosteus_aculeatus
ENSTNIG00000009153pabpc1b5880.612ENSGGOG00000038606-9880.612Gorilla_gorilla
ENSTNIG00000009153pabpc1b5880.612ENSGGOG00000043933-9880.612Gorilla_gorilla
ENSTNIG00000009153pabpc1b10090.596ENSHBUG00000002075pabpc1b10090.596Haplochromis_burtoni
ENSTNIG00000009153pabpc1b10086.604ENSHBUG00000020487pabpc1a10088.341Haplochromis_burtoni
ENSTNIG00000009153pabpc1b5880.612ENSHGLG00000019668-9880.612Heterocephalus_glaber_female
ENSTNIG00000009153pabpc1b5880.612ENSHGLG00000019762-9880.612Heterocephalus_glaber_female
ENSTNIG00000009153pabpc1b5880.612ENSHGLG00100020854-9880.612Heterocephalus_glaber_male
ENSTNIG00000009153pabpc1b9877.904ENSHCOG00000003175pabpc1b9977.904Hippocampus_comes
ENSTNIG00000009153pabpc1b10085.826ENSHCOG00000013502pabpc1a10086.449Hippocampus_comes
ENSTNIG00000009153pabpc1b7755.224ENSIPUG00000018724-8155.224Ictalurus_punctatus
ENSTNIG00000009153pabpc1b10085.133ENSIPUG00000008848pabpc1a10085.290Ictalurus_punctatus
ENSTNIG00000009153pabpc1b10084.194ENSIPUG00000010791-10084.194Ictalurus_punctatus
ENSTNIG00000009153pabpc1b7454.489ENSIPUG00000021244-6952.756Ictalurus_punctatus
ENSTNIG00000009153pabpc1b5881.122ENSSTOG00000026028-9881.122Ictidomys_tridecemlineatus
ENSTNIG00000009153pabpc1b5881.122ENSSTOG00000022096-9881.122Ictidomys_tridecemlineatus
ENSTNIG00000009153pabpc1b5880.102ENSJJAG00000007037-9880.102Jaculus_jaculus
ENSTNIG00000009153pabpc1b10089.185ENSKMAG00000008049pabpc1b10089.812Kryptolebias_marmoratus
ENSTNIG00000009153pabpc1b10086.449ENSKMAG00000000605pabpc1a10086.449Kryptolebias_marmoratus
ENSTNIG00000009153pabpc1b10087.072ENSLBEG00000024002-10087.072Labrus_bergylta
ENSTNIG00000009153pabpc1b10090.125ENSLBEG00000026845pabpc1b10090.125Labrus_bergylta
ENSTNIG00000009153pabpc1b5980.000ENSLAFG00000023096-9880.000Loxodonta_africana
ENSTNIG00000009153pabpc1b5880.203ENSMFAG00000028878-9880.203Macaca_fascicularis
ENSTNIG00000009153pabpc1b5880.612ENSMMUG00000039929-9880.612Macaca_mulatta
ENSTNIG00000009153pabpc1b5880.612ENSMMUG00000037681-9880.612Macaca_mulatta
ENSTNIG00000009153pabpc1b5880.612ENSMMUG00000009740-9880.612Macaca_mulatta
ENSTNIG00000009153pabpc1b5880.612ENSMNEG00000037732-9880.612Macaca_nemestrina
ENSTNIG00000009153pabpc1b5880.612ENSMLEG00000027495-9880.612Mandrillus_leucophaeus
ENSTNIG00000009153pabpc1b10085.981ENSMAMG00000004502-10087.054Mastacembelus_armatus
ENSTNIG00000009153pabpc1b10091.850ENSMAMG00000014610pabpc1b10091.850Mastacembelus_armatus
ENSTNIG00000009153pabpc1b10086.604ENSMZEG00005025416pabpc1a10088.341Maylandia_zebra
ENSTNIG00000009153pabpc1b10090.596ENSMZEG00005026745pabpc1b10090.596Maylandia_zebra
ENSTNIG00000009153pabpc1b5880.612ENSMICG00000047642-9880.612Microcebus_murinus
ENSTNIG00000009153pabpc1b10085.737ENSMMOG00000018009pabpc1b10085.893Mola_mola
ENSTNIG00000009153pabpc1b10085.626ENSMMOG00000018044pabpc1a10088.117Mola_mola
ENSTNIG00000009153pabpc1b9872.152ENSMODG00000013156-9872.655Monodelphis_domestica
ENSTNIG00000009153pabpc1b9964.342ENSMODG00000015024-9964.342Monodelphis_domestica
ENSTNIG00000009153pabpc1b10085.981ENSMALG00000013020-10086.449Monopterus_albus
ENSTNIG00000009153pabpc1b10085.110ENSMALG00000006066pabpc1b10085.110Monopterus_albus
ENSTNIG00000009153pabpc1b5882.514ENSNGAG00000012688-9880.102Nannospalax_galili
ENSTNIG00000009153pabpc1b10086.604ENSNBRG00000003068-10088.341Neolamprologus_brichardi
ENSTNIG00000009153pabpc1b10090.439ENSNBRG00000013737pabpc1b10090.439Neolamprologus_brichardi
ENSTNIG00000009153pabpc1b5880.612ENSNLEG00000018128-9880.612Nomascus_leucogenys
ENSTNIG00000009153pabpc1b5880.102ENSODEG00000018540-9880.102Octodon_degus
ENSTNIG00000009153pabpc1b10086.604ENSONIG00000006871-10086.604Oreochromis_niloticus
ENSTNIG00000009153pabpc1b10090.282ENSONIG00000002717pabpc1b10090.282Oreochromis_niloticus
ENSTNIG00000009153pabpc1b5880.612ENSOCUG00000002565-9880.612Oryctolagus_cuniculus
ENSTNIG00000009153pabpc1b10083.856ENSORLG00000003008-10083.856Oryzias_latipes
ENSTNIG00000009153pabpc1b10085.670ENSORLG00000002691pabpc1a9691.924Oryzias_latipes
ENSTNIG00000009153pabpc1b10083.699ENSORLG00020022259-10083.699Oryzias_latipes_hni
ENSTNIG00000009153pabpc1b10085.826ENSORLG00020022398pabpc1a10086.449Oryzias_latipes_hni
ENSTNIG00000009153pabpc1b10084.169ENSORLG00015010932-10084.169Oryzias_latipes_hsok
ENSTNIG00000009153pabpc1b10085.670ENSORLG00015013633pabpc110086.293Oryzias_latipes_hsok
ENSTNIG00000009153pabpc1b9182.287ENSOMEG00000013627pabpc1b10082.287Oryzias_melastigma
ENSTNIG00000009153pabpc1b10085.670ENSOMEG00000020219pabpc1a10086.293Oryzias_melastigma
ENSTNIG00000009153pabpc1b5880.612ENSOGAG00000026047-9880.612Otolemur_garnettii
ENSTNIG00000009153pabpc1b5880.612ENSOGAG00000029513-9880.612Otolemur_garnettii
ENSTNIG00000009153pabpc1b5880.612ENSOARG00000005943-9880.612Ovis_aries
ENSTNIG00000009153pabpc1b5880.612ENSPPAG00000012920-9880.612Pan_paniscus
ENSTNIG00000009153pabpc1b5880.612ENSPPRG00000011809-9880.612Panthera_pardus
ENSTNIG00000009153pabpc1b5880.612ENSPPRG00000011804-9880.612Panthera_pardus
ENSTNIG00000009153pabpc1b5880.612ENSPTRG00000028252-9880.612Pan_troglodytes
ENSTNIG00000009153pabpc1b5880.612ENSPANG00000011549-9880.612Papio_anubis
ENSTNIG00000009153pabpc1b10089.969ENSPKIG00000005676pabpc1b10089.969Paramormyrops_kingsleyae
ENSTNIG00000009153pabpc1b7093.722ENSPMGG00000023134-9793.722Periophthalmus_magnuspinnatus
ENSTNIG00000009153pabpc1b7189.845ENSPMGG00000022487pabpc1a9389.845Periophthalmus_magnuspinnatus
ENSTNIG00000009153pabpc1b9969.268ENSPCIG00000016995-5569.268Phascolarctos_cinereus
ENSTNIG00000009153pabpc1b10085.253ENSPFOG00000010815pabpc1a10085.868Poecilia_formosa
ENSTNIG00000009153pabpc1b10090.439ENSPFOG00000005917pabpc1b10090.909Poecilia_formosa
ENSTNIG00000009153pabpc1b10090.752ENSPLAG00000001388pabpc1b10091.223Poecilia_latipinna
ENSTNIG00000009153pabpc1b10086.137ENSPLAG00000004114pabpc1a10086.760Poecilia_latipinna
ENSTNIG00000009153pabpc1b10090.439ENSPMEG00000014399pabpc1b10090.909Poecilia_mexicana
ENSTNIG00000009153pabpc1b10086.137ENSPMEG00000001334pabpc1a10086.760Poecilia_mexicana
ENSTNIG00000009153pabpc1b10083.642ENSPREG00000019595pabpc1a9296.183Poecilia_reticulata
ENSTNIG00000009153pabpc1b10090.752ENSPREG00000010911pabpc1b10091.223Poecilia_reticulata
ENSTNIG00000009153pabpc1b5880.612ENSPPYG00000020468-9880.612Pongo_abelii
ENSTNIG00000009153pabpc1b5980.612ENSPCAG00000005308-9880.612Procavia_capensis
ENSTNIG00000009153pabpc1b5881.122ENSPCOG00000026349-9881.122Propithecus_coquereli
ENSTNIG00000009153pabpc1b5980.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSTNIG00000009153pabpc1b10086.604ENSPNYG00000005192pabpc1a10086.604Pundamilia_nyererei
ENSTNIG00000009153pabpc1b10090.596ENSPNYG00000012578pabpc1b10090.596Pundamilia_nyererei
ENSTNIG00000009153pabpc1b10089.969ENSPNAG00000024626pabpc1b10089.969Pygocentrus_nattereri
ENSTNIG00000009153pabpc1b10085.915ENSPNAG00000028408pabpc1a10085.915Pygocentrus_nattereri
ENSTNIG00000009153pabpc1b5880.612ENSRBIG00000027173-9880.612Rhinopithecus_bieti
ENSTNIG00000009153pabpc1b8789.598ENSRBIG00000028738-9589.598Rhinopithecus_bieti
ENSTNIG00000009153pabpc1b5880.612ENSRROG00000017404-9880.612Rhinopithecus_roxellana
ENSTNIG00000009153pabpc1b9862.520ENSSHAG00000000511-10062.520Sarcophilus_harrisii
ENSTNIG00000009153pabpc1b10087.324ENSSFOG00015006662pabpc1a10087.637Scleropages_formosus
ENSTNIG00000009153pabpc1b10089.812ENSSFOG00015002752-10089.812Scleropages_formosus
ENSTNIG00000009153pabpc1b6679.769ENSSFOG00015019668-8679.769Scleropages_formosus
ENSTNIG00000009153pabpc1b10090.596ENSSMAG00000006869pabpc1b10090.596Scophthalmus_maximus
ENSTNIG00000009153pabpc1b10086.760ENSSMAG00000010803pabpc1a10086.760Scophthalmus_maximus
ENSTNIG00000009153pabpc1b10089.028ENSSDUG00000011965pabpc1b10089.028Seriola_dumerili
ENSTNIG00000009153pabpc1b10086.916ENSSDUG00000006675pabpc1a10086.916Seriola_dumerili
ENSTNIG00000009153pabpc1b10086.916ENSSLDG00000011661pabpc1a10086.916Seriola_lalandi_dorsalis
ENSTNIG00000009153pabpc1b10090.669ENSSLDG00000014156pabpc1b10090.669Seriola_lalandi_dorsalis
ENSTNIG00000009153pabpc1b10091.379ENSSPAG00000019265pabpc1b10091.536Stegastes_partitus
ENSTNIG00000009153pabpc1b10086.137ENSSPAG00000014453-10086.760Stegastes_partitus
ENSTNIG00000009153pabpc1b5880.612ENSSSCG00000036336-9880.612Sus_scrofa
ENSTNIG00000009153pabpc1b5880.612ENSSSCG00000032167-9880.612Sus_scrofa
ENSTNIG00000009153pabpc1b10097.962ENSTRUG00000003767-10097.962Takifugu_rubripes
ENSTNIG00000009153pabpc1b10086.137ENSTRUG00000011577-10086.293Takifugu_rubripes
ENSTNIG00000009153pabpc1b5980.612ENSTTRG00000013181-9880.612Tursiops_truncatus
ENSTNIG00000009153pabpc1b5880.612ENSUAMG00000008089-9880.612Ursus_americanus
ENSTNIG00000009153pabpc1b9653.323ENSUMAG00000023926-8967.778Ursus_maritimus
ENSTNIG00000009153pabpc1b5880.612ENSUMAG00000003364-9880.612Ursus_maritimus
ENSTNIG00000009153pabpc1b5879.798ENSVVUG00000015892-9679.798Vulpes_vulpes
ENSTNIG00000009153pabpc1b9945.796ENSXETG00000015439-10045.796Xenopus_tropicalis
ENSTNIG00000009153pabpc1b10086.834ENSXCOG00000019901pabpc1b10086.834Xiphophorus_couchianus
ENSTNIG00000009153pabpc1b10083.229ENSXCOG00000017066pabpc1a10083.856Xiphophorus_couchianus
ENSTNIG00000009153pabpc1b10085.981ENSXMAG00000002555pabpc1a10086.604Xiphophorus_maculatus
ENSTNIG00000009153pabpc1b10090.596ENSXMAG00000003753pabpc1b10091.066Xiphophorus_maculatus

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