EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000009739 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 8404 bases
Position: chr3:10174445-10182848
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000012625	MMR_HSR1	PF01926.23	1.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000012816	-	1902	-	ENSTNIP00000012625	470 (aa)	-	H3CWJ1

Gene Model

Click here to download ENSTNIG00000009739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000009739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000009739	srl	85	32.258	ENSTNIG00000004842	ehd4	71	32.258
ENSTNIG00000009739	srl	83	32.564	ENSTNIG00000016792	ehd1a	70	32.564
ENSTNIG00000009739	srl	87	33.252	ENSTNIG00000016284	ehd2b	74	33.252
ENSTNIG00000009739	srl	100	72.211	ENSTNIG00000014096	SRL	95	74.569
ENSTNIG00000009739	srl	79	33.780	ENSTNIG00000010948	ehd3	73	33.086

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000009739	srl	96	81.375	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSTNIG00000009739	srl	94	77.652	ENSAPOG00000012432	SRL	99	77.652	Acanthochromis_polyacanthus
ENSTNIG00000009739	srl	100	95.966	ENSAPOG00000018093	srl	100	95.966	Acanthochromis_polyacanthus
ENSTNIG00000009739	srl	97	81.223	ENSAMEG00000010862	SRL	50	82.658	Ailuropoda_melanoleuca
ENSTNIG00000009739	srl	96	97.333	ENSACIG00000015799	srl	99	97.333	Amphilophus_citrinellus
ENSTNIG00000009739	srl	95	75.223	ENSACIG00000015419	SRL	99	75.223	Amphilophus_citrinellus
ENSTNIG00000009739	srl	97	76.253	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSTNIG00000009739	srl	92	97.465	ENSAOCG00000007574	srl	100	97.465	Amphiprion_ocellaris
ENSTNIG00000009739	srl	97	72.926	ENSAPEG00000006533	SRL	96	75.000	Amphiprion_percula
ENSTNIG00000009739	srl	100	96.178	ENSAPEG00000006911	srl	100	96.178	Amphiprion_percula
ENSTNIG00000009739	srl	100	96.178	ENSATEG00000024315	srl	100	96.178	Anabas_testudineus
ENSTNIG00000009739	srl	95	75.488	ENSATEG00000009643	SRL	52	76.316	Anabas_testudineus
ENSTNIG00000009739	srl	100	78.689	ENSACAG00000016380	SRL	85	80.994	Anolis_carolinensis
ENSTNIG00000009739	srl	100	95.117	ENSACLG00000027685	srl	98	96.214	Astatotilapia_calliptera
ENSTNIG00000009739	srl	96	73.650	ENSACLG00000024674	SRL	58	73.650	Astatotilapia_calliptera
ENSTNIG00000009739	srl	100	90.000	ENSAMXG00000018789	srl	89	91.850	Astyanax_mexicanus
ENSTNIG00000009739	srl	89	78.333	ENSAMXG00000038693	SRL	100	74.393	Astyanax_mexicanus
ENSTNIG00000009739	srl	96	81.898	ENSBTAG00000001078	SRL	57	81.898	Bos_taurus
ENSTNIG00000009739	srl	94	82.805	ENSCJAG00000019750	SRL	95	81.596	Callithrix_jacchus
ENSTNIG00000009739	srl	98	80.610	ENSCAFG00000019233	SRL	85	81.360	Canis_familiaris
ENSTNIG00000009739	srl	97	81.140	ENSCAFG00020025024	SRL	56	81.140	Canis_lupus_dingo
ENSTNIG00000009739	srl	97	81.441	ENSCHIG00000017927	SRL	57	81.898	Capra_hircus
ENSTNIG00000009739	srl	100	79.704	ENSTSYG00000007919	SRL	99	83.721	Carlito_syrichta
ENSTNIG00000009739	srl	97	81.278	ENSCPOG00000012643	SRL	96	81.278	Cavia_porcellus
ENSTNIG00000009739	srl	94	77.376	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSTNIG00000009739	srl	96	81.375	ENSCATG00000032227	-	95	81.375	Cercocebus_atys
ENSTNIG00000009739	srl	97	81.938	ENSCLAG00000016242	SRL	96	81.938	Chinchilla_lanigera
ENSTNIG00000009739	srl	82	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSTNIG00000009739	srl	96	87.047	ENSCPBG00000026371	SRL	96	80.860	Chrysemys_picta_bellii
ENSTNIG00000009739	srl	93	59.453	ENSCING00000005231	-	95	60.280	Ciona_intestinalis
ENSTNIG00000009739	srl	96	81.375	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSTNIG00000009739	srl	97	82.159	ENSCGRG00001016630	Srl	96	82.159	Cricetulus_griseus_chok1gshd
ENSTNIG00000009739	srl	97	82.159	ENSCGRG00000005458	Srl	96	82.159	Cricetulus_griseus_crigri
ENSTNIG00000009739	srl	100	95.319	ENSCSEG00000016151	srl	100	95.319	Cynoglossus_semilaevis
ENSTNIG00000009739	srl	99	72.591	ENSCSEG00000011866	SRL	89	75.621	Cynoglossus_semilaevis
ENSTNIG00000009739	srl	97	75.322	ENSCVAG00000022465	SRL	61	75.922	Cyprinodon_variegatus
ENSTNIG00000009739	srl	100	93.404	ENSCVAG00000003513	srl	100	93.404	Cyprinodon_variegatus
ENSTNIG00000009739	srl	81	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSTNIG00000009739	srl	100	89.149	ENSDARG00000104587	srl	97	91.630	Danio_rerio
ENSTNIG00000009739	srl	95	81.778	ENSDNOG00000011643	SRL	54	81.637	Dasypus_novemcinctus
ENSTNIG00000009739	srl	97	82.159	ENSDORG00000014807	Srl	96	82.159	Dipodomys_ordii
ENSTNIG00000009739	srl	79	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSTNIG00000009739	srl	96	82.444	ENSEASG00005000942	SRL	55	82.119	Equus_asinus_asinus
ENSTNIG00000009739	srl	99	80.932	ENSECAG00000024219	SRL	95	82.444	Equus_caballus
ENSTNIG00000009739	srl	100	83.778	ENSELUG00000015616	srl	100	83.778	Esox_lucius
ENSTNIG00000009739	srl	100	79.704	ENSFCAG00000022075	SRL	96	81.498	Felis_catus
ENSTNIG00000009739	srl	94	83.258	ENSFALG00000004328	SRL	63	83.258	Ficedula_albicollis
ENSTNIG00000009739	srl	97	81.978	ENSFDAG00000006199	SRL	96	82.159	Fukomys_damarensis
ENSTNIG00000009739	srl	100	93.191	ENSFHEG00000011239	srl	100	93.191	Fundulus_heteroclitus
ENSTNIG00000009739	srl	94	76.577	ENSFHEG00000011854	SRL	99	76.802	Fundulus_heteroclitus
ENSTNIG00000009739	srl	94	89.868	ENSGMOG00000014954	srl	100	89.868	Gadus_morhua
ENSTNIG00000009739	srl	99	80.679	ENSGALG00000038884	SRL	96	81.938	Gallus_gallus
ENSTNIG00000009739	srl	96	77.283	ENSGAFG00000016984	SRL	100	77.283	Gambusia_affinis
ENSTNIG00000009739	srl	100	93.830	ENSGAFG00000000010	srl	100	93.830	Gambusia_affinis
ENSTNIG00000009739	srl	94	93.626	ENSGACG00000011332	srl	100	93.626	Gasterosteus_aculeatus
ENSTNIG00000009739	srl	96	81.375	ENSGGOG00000011312	-	95	81.375	Gorilla_gorilla
ENSTNIG00000009739	srl	96	73.763	ENSHBUG00000015710	SRL	58	73.763	Haplochromis_burtoni
ENSTNIG00000009739	srl	100	95.117	ENSHBUG00000007581	srl	98	96.214	Haplochromis_burtoni
ENSTNIG00000009739	srl	97	81.938	ENSHGLG00000015271	SRL	96	81.938	Heterocephalus_glaber_female
ENSTNIG00000009739	srl	97	81.938	ENSHGLG00100019378	SRL	96	81.938	Heterocephalus_glaber_male
ENSTNIG00000009739	srl	94	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSTNIG00000009739	srl	100	94.915	ENSHCOG00000008687	srl	99	96.429	Hippocampus_comes
ENSTNIG00000009739	srl	93	69.495	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSTNIG00000009739	srl	100	89.384	ENSIPUG00000012513	srl	97	90.708	Ictalurus_punctatus
ENSTNIG00000009739	srl	97	81.498	ENSSTOG00000021151	-	96	81.498	Ictidomys_tridecemlineatus
ENSTNIG00000009739	srl	100	81.568	ENSJJAG00000016400	Srl	96	82.379	Jaculus_jaculus
ENSTNIG00000009739	srl	98	93.913	ENSKMAG00000014115	srl	93	96.437	Kryptolebias_marmoratus
ENSTNIG00000009739	srl	94	76.644	ENSKMAG00000019537	SRL	100	76.644	Kryptolebias_marmoratus
ENSTNIG00000009739	srl	94	75.566	ENSLBEG00000013811	SRL	95	75.792	Labrus_bergylta
ENSTNIG00000009739	srl	100	94.480	ENSLBEG00000026643	srl	97	95.165	Labrus_bergylta
ENSTNIG00000009739	srl	100	80.331	ENSLACG00000002825	SRL	98	85.520	Latimeria_chalumnae
ENSTNIG00000009739	srl	99	86.882	ENSLOCG00000002644	srl	96	88.196	Lepisosteus_oculatus
ENSTNIG00000009739	srl	94	82.353	ENSLAFG00000006329	SRL	50	82.353	Loxodonta_africana
ENSTNIG00000009739	srl	91	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSTNIG00000009739	srl	97	81.004	ENSMNEG00000019236	-	95	81.375	Macaca_nemestrina
ENSTNIG00000009739	srl	96	74.501	ENSMLEG00000032156	SRL	95	74.501	Mandrillus_leucophaeus
ENSTNIG00000009739	srl	94	75.219	ENSMAMG00000013756	SRL	53	75.219	Mastacembelus_armatus
ENSTNIG00000009739	srl	99	94.624	ENSMAMG00000023322	srl	96	96.239	Mastacembelus_armatus
ENSTNIG00000009739	srl	100	95.117	ENSMZEG00005004548	srl	98	96.214	Maylandia_zebra
ENSTNIG00000009739	srl	96	73.548	ENSMZEG00005004010	SRL	58	73.548	Maylandia_zebra
ENSTNIG00000009739	srl	96	81.718	ENSMGAG00000009342	SRL	96	84.169	Meleagris_gallopavo
ENSTNIG00000009739	srl	94	83.258	ENSMICG00000032307	SRL	93	83.258	Microcebus_murinus
ENSTNIG00000009739	srl	100	80.085	ENSMOCG00000008208	Srl	96	81.498	Microtus_ochrogaster
ENSTNIG00000009739	srl	94	74.286	ENSMMOG00000021572	SRL	99	74.286	Mola_mola
ENSTNIG00000009739	srl	96	96.889	ENSMMOG00000013970	srl	100	96.889	Mola_mola
ENSTNIG00000009739	srl	96	82.667	ENSMODG00000016380	-	51	82.667	Monodelphis_domestica
ENSTNIG00000009739	srl	89	77.327	ENSMALG00000000670	SRL	98	77.327	Monopterus_albus
ENSTNIG00000009739	srl	100	95.106	ENSMALG00000005039	srl	100	95.106	Monopterus_albus
ENSTNIG00000009739	srl	97	82.819	MGP_CAROLIEiJ_G0020400	Srl	96	82.819	Mus_caroli
ENSTNIG00000009739	srl	97	82.819	ENSMUSG00000022519	Srl	96	82.819	Mus_musculus
ENSTNIG00000009739	srl	97	82.819	MGP_SPRETEiJ_G0021294	Srl	96	82.819	Mus_spretus
ENSTNIG00000009739	srl	96	81.818	ENSMPUG00000015025	SRL	55	81.818	Mustela_putorius_furo
ENSTNIG00000009739	srl	96	82.522	ENSMLUG00000030733	SRL	57	82.522	Myotis_lucifugus
ENSTNIG00000009739	srl	97	82.599	ENSNGAG00000019741	Srl	96	82.599	Nannospalax_galili
ENSTNIG00000009739	srl	96	73.548	ENSNBRG00000002422	SRL	56	75.926	Neolamprologus_brichardi
ENSTNIG00000009739	srl	100	94.692	ENSNBRG00000023775	srl	97	95.824	Neolamprologus_brichardi
ENSTNIG00000009739	srl	96	75.831	ENSNLEG00000029051	SRL	95	75.831	Nomascus_leucogenys
ENSTNIG00000009739	srl	97	75.163	ENSOPRG00000000477	-	53	75.885	Ochotona_princeps
ENSTNIG00000009739	srl	97	81.938	ENSODEG00000013256	SRL	96	81.938	Octodon_degus
ENSTNIG00000009739	srl	100	92.754	ENSONIG00000005192	srl	100	92.754	Oreochromis_niloticus
ENSTNIG00000009739	srl	94	75.169	ENSORLG00000015064	SRL	97	75.169	Oryzias_latipes
ENSTNIG00000009739	srl	100	94.468	ENSORLG00000008291	srl	97	94.468	Oryzias_latipes
ENSTNIG00000009739	srl	100	94.894	ENSORLG00020019784	srl	85	94.894	Oryzias_latipes_hni
ENSTNIG00000009739	srl	94	75.395	ENSORLG00020018173	SRL	97	75.395	Oryzias_latipes_hni
ENSTNIG00000009739	srl	100	94.468	ENSORLG00015009342	srl	97	94.468	Oryzias_latipes_hsok
ENSTNIG00000009739	srl	94	75.395	ENSORLG00015019063	SRL	97	75.395	Oryzias_latipes_hsok
ENSTNIG00000009739	srl	100	94.255	ENSOMEG00000010006	srl	100	94.255	Oryzias_melastigma
ENSTNIG00000009739	srl	94	73.904	ENSOMEG00000005682	SRL	53	74.179	Oryzias_melastigma
ENSTNIG00000009739	srl	97	81.278	ENSOGAG00000029266	SRL	55	81.278	Otolemur_garnettii
ENSTNIG00000009739	srl	97	81.441	ENSOARG00000003074	SRL	56	82.222	Ovis_aries
ENSTNIG00000009739	srl	96	81.375	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSTNIG00000009739	srl	100	79.704	ENSPPRG00000010274	SRL	98	84.834	Panthera_pardus
ENSTNIG00000009739	srl	100	79.704	ENSPTIG00000015162	SRL	98	84.834	Panthera_tigris_altaica
ENSTNIG00000009739	srl	96	81.375	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSTNIG00000009739	srl	97	81.223	ENSPANG00000013804	SRL	98	81.319	Papio_anubis
ENSTNIG00000009739	srl	100	89.852	ENSPKIG00000006405	srl	97	91.028	Paramormyrops_kingsleyae
ENSTNIG00000009739	srl	100	77.707	ENSPKIG00000024974	SRL	91	79.121	Paramormyrops_kingsleyae
ENSTNIG00000009739	srl	99	91.845	ENSPMGG00000021081	srl	97	93.805	Periophthalmus_magnuspinnatus
ENSTNIG00000009739	srl	94	75.339	ENSPMGG00000023505	-	99	75.510	Periophthalmus_magnuspinnatus
ENSTNIG00000009739	srl	97	82.159	ENSPEMG00000015842	Srl	96	82.159	Peromyscus_maniculatus_bairdii
ENSTNIG00000009739	srl	89	67.890	ENSPMAG00000004786	srl	99	67.890	Petromyzon_marinus
ENSTNIG00000009739	srl	96	82.889	ENSPCIG00000012128	SRL	98	82.889	Phascolarctos_cinereus
ENSTNIG00000009739	srl	100	91.701	ENSPFOG00000011408	srl	96	92.026	Poecilia_formosa
ENSTNIG00000009739	srl	97	93.886	ENSPLAG00000008017	srl	98	95.111	Poecilia_latipinna
ENSTNIG00000009739	srl	96	75.947	ENSPLAG00000002932	SRL	100	75.947	Poecilia_latipinna
ENSTNIG00000009739	srl	97	74.359	ENSPMEG00000005890	SRL	61	74.082	Poecilia_mexicana
ENSTNIG00000009739	srl	100	94.043	ENSPMEG00000006745	srl	98	95.111	Poecilia_mexicana
ENSTNIG00000009739	srl	100	93.617	ENSPREG00000007751	srl	100	94.678	Poecilia_reticulata
ENSTNIG00000009739	srl	96	77.060	ENSPREG00000000315	SRL	100	77.060	Poecilia_reticulata
ENSTNIG00000009739	srl	89	84.487	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSTNIG00000009739	srl	96	81.375	ENSPCAG00000003378	-	50	82.540	Procavia_capensis
ENSTNIG00000009739	srl	94	82.805	ENSPCOG00000023135	SRL	99	83.488	Propithecus_coquereli
ENSTNIG00000009739	srl	96	81.818	ENSPVAG00000006586	SRL	56	81.858	Pteropus_vampyrus
ENSTNIG00000009739	srl	96	73.548	ENSPNYG00000003423	SRL	58	73.548	Pundamilia_nyererei
ENSTNIG00000009739	srl	100	95.117	ENSPNYG00000001200	srl	98	96.214	Pundamilia_nyererei
ENSTNIG00000009739	srl	94	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSTNIG00000009739	srl	100	90.000	ENSPNAG00000023106	srl	97	91.850	Pygocentrus_nattereri
ENSTNIG00000009739	srl	97	82.599	ENSRNOG00000005269	Srl	50	82.599	Rattus_norvegicus
ENSTNIG00000009739	srl	97	80.349	ENSRBIG00000042358	SRL	50	81.057	Rhinopithecus_bieti
ENSTNIG00000009739	srl	94	82.805	ENSSBOG00000029273	SRL	95	81.596	Saimiri_boliviensis_boliviensis
ENSTNIG00000009739	srl	97	81.758	ENSSHAG00000011715	-	51	82.444	Sarcophilus_harrisii
ENSTNIG00000009739	srl	94	77.477	ENSSFOG00015021327	SRL	50	77.009	Scleropages_formosus
ENSTNIG00000009739	srl	100	87.603	ENSSFOG00015009773	srl	96	92.222	Scleropages_formosus
ENSTNIG00000009739	srl	94	74.286	ENSSMAG00000002232	SRL	50	74.286	Scophthalmus_maximus
ENSTNIG00000009739	srl	100	94.480	ENSSMAG00000016274	srl	100	94.480	Scophthalmus_maximus
ENSTNIG00000009739	srl	94	96.171	ENSSDUG00000010808	srl	98	96.171	Seriola_dumerili
ENSTNIG00000009739	srl	94	77.060	ENSSDUG00000009161	SRL	98	77.060	Seriola_dumerili
ENSTNIG00000009739	srl	100	94.894	ENSSLDG00000022024	srl	100	94.894	Seriola_lalandi_dorsalis
ENSTNIG00000009739	srl	94	76.805	ENSSLDG00000014601	SRL	99	77.363	Seriola_lalandi_dorsalis
ENSTNIG00000009739	srl	96	82.444	ENSSPUG00000016859	SRL	99	82.444	Sphenodon_punctatus
ENSTNIG00000009739	srl	94	78.781	ENSSPAG00000014254	SRL	99	78.781	Stegastes_partitus
ENSTNIG00000009739	srl	100	95.763	ENSSPAG00000019105	srl	100	95.763	Stegastes_partitus
ENSTNIG00000009739	srl	96	81.678	ENSSSCG00000007949	SRL	99	82.844	Sus_scrofa
ENSTNIG00000009739	srl	77	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSTNIG00000009739	srl	94	83.484	ENSTGUG00000003951	-	97	83.484	Taeniopygia_guttata
ENSTNIG00000009739	srl	100	98.723	ENSTRUG00000006005	srl	100	98.723	Takifugu_rubripes
ENSTNIG00000009739	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSTNIG00000009739	srl	94	82.658	ENSUAMG00000005701	SRL	55	82.658	Ursus_americanus
ENSTNIG00000009739	srl	94	82.658	ENSUMAG00000002574	SRL	55	82.658	Ursus_maritimus
ENSTNIG00000009739	srl	97	81.278	ENSVVUG00000016331	-	50	81.278	Vulpes_vulpes
ENSTNIG00000009739	srl	99	79.570	ENSXETG00000017313	srl	98	82.167	Xenopus_tropicalis
ENSTNIG00000009739	srl	96	76.940	ENSXCOG00000014584	SRL	100	76.940	Xiphophorus_couchianus
ENSTNIG00000009739	srl	90	95.487	ENSXCOG00000010424	srl	97	95.487	Xiphophorus_couchianus
ENSTNIG00000009739	srl	100	93.404	ENSXMAG00000004625	srl	95	93.404	Xiphophorus_maculatus
ENSTNIG00000009739	srl	97	74.573	ENSXMAG00000027598	SRL	63	74.730	Xiphophorus_maculatus