EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000009892 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2109 bases
Position: chr12:1116839-1118947
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000012783	TUDOR	PF00567.24	1.5e-05	1	1
ENSTNIP00000012783	SMN	PF06003.12	5.6e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000012975	-	858	-	ENSTNIP00000012783	285 (aa)	-	H3CWZ8

Gene Model

Click here to download ENSTNIG00000009892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000009892's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000009892	smn1	95	48.718	ENSG00000205571	SMN2	93	49.434	Homo_sapiens
ENSTNIG00000009892	smn1	95	48.718	ENSG00000172062	SMN1	93	49.434	Homo_sapiens
ENSTNIG00000009892	smn1	100	70.345	ENSAPOG00000011324	smn1	100	67.931	Acanthochromis_polyacanthus
ENSTNIG00000009892	smn1	95	48.029	ENSAMEG00000003316	-	90	49.466	Ailuropoda_melanoleuca
ENSTNIG00000009892	smn1	61	61.932	ENSACIG00000007598	smn1	94	63.068	Amphilophus_citrinellus
ENSTNIG00000009892	smn1	93	65.799	ENSACIG00000019772	-	99	63.333	Amphilophus_citrinellus
ENSTNIG00000009892	smn1	100	70.345	ENSAOCG00000024444	smn1	100	67.931	Amphiprion_ocellaris
ENSTNIG00000009892	smn1	100	70.345	ENSAPEG00000016504	smn1	100	67.931	Amphiprion_percula
ENSTNIG00000009892	smn1	94	70.330	ENSATEG00000002182	smn1	81	67.766	Anabas_testudineus
ENSTNIG00000009892	smn1	98	50.177	ENSACAG00000010017	-	96	48.601	Anolis_carolinensis
ENSTNIG00000009892	smn1	95	48.592	ENSANAG00000032133	-	54	55.758	Aotus_nancymaae
ENSTNIG00000009892	smn1	98	66.548	ENSACLG00000007308	smn1	92	66.548	Astatotilapia_calliptera
ENSTNIG00000009892	smn1	100	55.749	ENSAMXG00000013884	smn1	97	58.065	Astyanax_mexicanus
ENSTNIG00000009892	smn1	95	51.579	ENSBTAG00000005743	SMN2	94	50.357	Bos_taurus
ENSTNIG00000009892	smn1	95	47.232	ENSCJAG00000016290	-	52	62.162	Callithrix_jacchus
ENSTNIG00000009892	smn1	95	48.057	ENSCAFG00000007812	SMN	93	49.470	Canis_familiaris
ENSTNIG00000009892	smn1	95	48.227	ENSCAFG00020019229	-	87	48.043	Canis_lupus_dingo
ENSTNIG00000009892	smn1	95	51.220	ENSCHIG00000015559	-	92	50.704	Capra_hircus
ENSTNIG00000009892	smn1	95	49.104	ENSTSYG00000012058	-	94	48.571	Carlito_syrichta
ENSTNIG00000009892	smn1	77	41.256	ENSCAPG00000011021	-	96	39.013	Cavia_aperea
ENSTNIG00000009892	smn1	94	47.500	ENSCPOG00000036973	-	92	48.029	Cavia_porcellus
ENSTNIG00000009892	smn1	94	46.454	ENSCPOG00000012328	-	93	46.831	Cavia_porcellus
ENSTNIG00000009892	smn1	95	44.485	ENSCCAG00000018127	-	92	47.312	Cebus_capucinus
ENSTNIG00000009892	smn1	95	47.857	ENSCATG00000037002	-	93	48.746	Cercocebus_atys
ENSTNIG00000009892	smn1	94	47.143	ENSCLAG00000000284	-	92	47.931	Chinchilla_lanigera
ENSTNIG00000009892	smn1	95	48.387	ENSCSAG00000015688	-	92	48.043	Chlorocebus_sabaeus
ENSTNIG00000009892	smn1	99	48.084	ENSCPBG00000010968	-	99	44.128	Chrysemys_picta_bellii
ENSTNIG00000009892	smn1	97	46.341	ENSCANG00000033324	-	94	45.361	Colobus_angolensis_palliatus
ENSTNIG00000009892	smn1	95	48.736	ENSCANG00000038242	-	94	48.162	Colobus_angolensis_palliatus
ENSTNIG00000009892	smn1	95	50.179	ENSCGRG00001017959	-	93	49.462	Cricetulus_griseus_chok1gshd
ENSTNIG00000009892	smn1	95	37.319	ENSCGRG00001016998	-	92	38.768	Cricetulus_griseus_chok1gshd
ENSTNIG00000009892	smn1	95	50.179	ENSCGRG00000007698	Smn1	93	49.462	Cricetulus_griseus_crigri
ENSTNIG00000009892	smn1	98	59.727	ENSCSEG00000015227	smn1	100	56.849	Cynoglossus_semilaevis
ENSTNIG00000009892	smn1	100	65.411	ENSCVAG00000007498	smn1	100	62.329	Cyprinodon_variegatus
ENSTNIG00000009892	smn1	100	58.741	ENSDARG00000018494	smn1	100	55.944	Danio_rerio
ENSTNIG00000009892	smn1	82	44.309	ENSDNOG00000007283	-	97	39.683	Dasypus_novemcinctus
ENSTNIG00000009892	smn1	95	40.146	ENSDORG00000007082	Smn1	91	41.509	Dipodomys_ordii
ENSTNIG00000009892	smn1	96	40.136	ENSEBUG00000011902	smn1	96	39.103	Eptatretus_burgeri
ENSTNIG00000009892	smn1	89	46.970	ENSEASG00005018000	-	89	48.120	Equus_asinus_asinus
ENSTNIG00000009892	smn1	95	49.645	ENSECAG00000015215	-	93	50.704	Equus_caballus
ENSTNIG00000009892	smn1	100	59.375	ENSELUG00000018067	smn1	100	59.233	Esox_lucius
ENSTNIG00000009892	smn1	95	48.214	ENSFCAG00000028292	SMN	51	61.654	Felis_catus
ENSTNIG00000009892	smn1	95	49.458	ENSFALG00000012320	-	95	46.691	Ficedula_albicollis
ENSTNIG00000009892	smn1	95	43.643	ENSFDAG00000017683	-	93	45.763	Fukomys_damarensis
ENSTNIG00000009892	smn1	97	67.491	ENSFHEG00000018508	smn1	100	65.724	Fundulus_heteroclitus
ENSTNIG00000009892	smn1	100	57.544	ENSGMOG00000017279	smn1	98	57.193	Gadus_morhua
ENSTNIG00000009892	smn1	95	52.878	ENSGALG00000002430	SMN	97	47.710	Gallus_gallus
ENSTNIG00000009892	smn1	100	66.897	ENSGAFG00000009501	smn1	100	64.828	Gambusia_affinis
ENSTNIG00000009892	smn1	100	66.436	ENSGACG00000010584	smn1	97	66.090	Gasterosteus_aculeatus
ENSTNIG00000009892	smn1	99	47.902	ENSGAGG00000011374	-	98	46.441	Gopherus_agassizii
ENSTNIG00000009892	smn1	98	36.567	ENSGAGG00000013639	-	94	36.567	Gopherus_agassizii
ENSTNIG00000009892	smn1	57	54.601	ENSGGOG00000026704	-	62	62.879	Gorilla_gorilla
ENSTNIG00000009892	smn1	92	46.008	ENSGGOG00000003872	-	54	62.879	Gorilla_gorilla
ENSTNIG00000009892	smn1	100	68.403	ENSHBUG00000013987	smn1	100	68.403	Haplochromis_burtoni
ENSTNIG00000009892	smn1	95	43.929	ENSHGLG00000001905	-	94	42.361	Heterocephalus_glaber_female
ENSTNIG00000009892	smn1	95	42.806	ENSHGLG00000001018	-	93	41.980	Heterocephalus_glaber_female
ENSTNIG00000009892	smn1	93	44.526	ENSHGLG00100018676	-	96	42.908	Heterocephalus_glaber_male
ENSTNIG00000009892	smn1	95	42.806	ENSHGLG00100011252	-	93	41.980	Heterocephalus_glaber_male
ENSTNIG00000009892	smn1	94	60.886	ENSHCOG00000017136	smn1	89	62.271	Hippocampus_comes
ENSTNIG00000009892	smn1	100	57.491	ENSIPUG00000012580	smn1	86	59.140	Ictalurus_punctatus
ENSTNIG00000009892	smn1	92	46.840	ENSSTOG00000012288	-	94	47.955	Ictidomys_tridecemlineatus
ENSTNIG00000009892	smn1	100	65.172	ENSKMAG00000007239	smn1	100	64.483	Kryptolebias_marmoratus
ENSTNIG00000009892	smn1	100	69.416	ENSLBEG00000022550	smn1	100	67.010	Labrus_bergylta
ENSTNIG00000009892	smn1	100	48.829	ENSLOCG00000011339	smn1	100	50.172	Lepisosteus_oculatus
ENSTNIG00000009892	smn1	95	49.645	ENSLAFG00000003425	-	90	44.521	Loxodonta_africana
ENSTNIG00000009892	smn1	95	46.099	ENSMFAG00000008812	-	92	45.552	Macaca_fascicularis
ENSTNIG00000009892	smn1	95	48.387	ENSMFAG00000031523	SMN1	93	48.897	Macaca_fascicularis
ENSTNIG00000009892	smn1	95	48.387	ENSMMUG00000020214	SMN1	93	48.897	Macaca_mulatta
ENSTNIG00000009892	smn1	95	45.390	ENSMMUG00000030594	-	92	44.840	Macaca_mulatta
ENSTNIG00000009892	smn1	76	36.123	ENSMNEG00000036423	-	84	36.000	Macaca_nemestrina
ENSTNIG00000009892	smn1	95	48.387	ENSMNEG00000035094	-	93	48.897	Macaca_nemestrina
ENSTNIG00000009892	smn1	95	48.387	ENSMLEG00000041902	-	93	49.104	Mandrillus_leucophaeus
ENSTNIG00000009892	smn1	100	65.979	ENSMAMG00000011034	smn1	100	66.323	Mastacembelus_armatus
ENSTNIG00000009892	smn1	100	68.403	ENSMZEG00005013634	smn1	100	68.403	Maylandia_zebra
ENSTNIG00000009892	smn1	69	44.949	ENSMGAG00000008889	-	94	40.704	Meleagris_gallopavo
ENSTNIG00000009892	smn1	95	49.822	ENSMAUG00000010262	Smn1	93	49.462	Mesocricetus_auratus
ENSTNIG00000009892	smn1	57	55.828	ENSMICG00000034708	-	72	55.828	Microcebus_murinus
ENSTNIG00000009892	smn1	95	50.000	ENSMOCG00000017833	Smn1	93	50.000	Microtus_ochrogaster
ENSTNIG00000009892	smn1	96	63.406	ENSMMOG00000005504	smn1	97	62.455	Mola_mola
ENSTNIG00000009892	smn1	95	51.613	ENSMODG00000001436	-	92	46.071	Monodelphis_domestica
ENSTNIG00000009892	smn1	100	68.041	ENSMALG00000008025	smn1	100	65.636	Monopterus_albus
ENSTNIG00000009892	smn1	95	49.270	MGP_CAROLIEiJ_G0018836	Smn1	93	50.000	Mus_caroli
ENSTNIG00000009892	smn1	95	48.905	ENSMUSG00000021645	Smn1	93	49.635	Mus_musculus
ENSTNIG00000009892	smn1	95	50.182	MGP_PahariEiJ_G0015911	Smn1	93	49.643	Mus_pahari
ENSTNIG00000009892	smn1	95	48.944	MGP_SPRETEiJ_G0019718	Smn1	93	49.270	Mus_spretus
ENSTNIG00000009892	smn1	93	48.352	ENSMPUG00000014470	-	94	49.818	Mustela_putorius_furo
ENSTNIG00000009892	smn1	95	47.143	ENSNGAG00000019833	Smn1	93	47.038	Nannospalax_galili
ENSTNIG00000009892	smn1	100	70.934	ENSNBRG00000023000	smn1	100	68.858	Neolamprologus_brichardi
ENSTNIG00000009892	smn1	95	48.540	ENSNLEG00000004454	-	93	49.434	Nomascus_leucogenys
ENSTNIG00000009892	smn1	80	43.668	ENSMEUG00000011393	-	99	41.228	Notamacropus_eugenii
ENSTNIG00000009892	smn1	91	49.077	ENSODEG00000015976	-	91	47.670	Octodon_degus
ENSTNIG00000009892	smn1	100	70.934	ENSONIG00000011799	smn1	100	68.858	Oreochromis_niloticus
ENSTNIG00000009892	smn1	94	48.913	ENSOANG00000001626	-	94	45.455	Ornithorhynchus_anatinus
ENSTNIG00000009892	smn1	95	49.275	ENSOCUG00000017097	-	92	44.876	Oryctolagus_cuniculus
ENSTNIG00000009892	smn1	95	49.110	ENSOCUG00000026649	-	93	45.070	Oryctolagus_cuniculus
ENSTNIG00000009892	smn1	100	64.726	ENSORLG00000010552	smn1	100	64.726	Oryzias_latipes
ENSTNIG00000009892	smn1	100	60.000	ENSORLG00020007936	smn1	100	58.966	Oryzias_latipes_hni
ENSTNIG00000009892	smn1	100	64.483	ENSORLG00015022425	smn1	100	64.828	Oryzias_latipes_hsok
ENSTNIG00000009892	smn1	100	65.517	ENSOMEG00000007824	smn1	100	65.862	Oryzias_melastigma
ENSTNIG00000009892	smn1	92	45.421	ENSOGAG00000031414	-	92	45.091	Otolemur_garnettii
ENSTNIG00000009892	smn1	94	50.177	ENSOARG00000005425	-	98	48.921	Ovis_aries
ENSTNIG00000009892	smn1	95	49.451	ENSPPAG00000036640	-	93	50.189	Pan_paniscus
ENSTNIG00000009892	smn1	95	48.214	ENSPPRG00000005575	-	51	61.654	Panthera_pardus
ENSTNIG00000009892	smn1	95	46.975	ENSPTIG00000007745	-	51	61.654	Panthera_tigris_altaica
ENSTNIG00000009892	smn1	95	47.163	ENSPTRG00000016955	-	93	47.794	Pan_troglodytes
ENSTNIG00000009892	smn1	95	48.214	ENSPANG00000013601	-	92	48.043	Papio_anubis
ENSTNIG00000009892	smn1	95	46.454	ENSPANG00000000253	-	92	45.907	Papio_anubis
ENSTNIG00000009892	smn1	96	56.631	ENSPKIG00000011096	smn1	96	57.609	Paramormyrops_kingsleyae
ENSTNIG00000009892	smn1	95	41.447	ENSPSIG00000014787	-	86	46.071	Pelodiscus_sinensis
ENSTNIG00000009892	smn1	100	59.375	ENSPMGG00000012285	smn1	97	61.111	Periophthalmus_magnuspinnatus
ENSTNIG00000009892	smn1	95	51.282	ENSPCIG00000025764	-	94	46.786	Phascolarctos_cinereus
ENSTNIG00000009892	smn1	100	67.241	ENSPFOG00000007786	smn1	100	64.828	Poecilia_formosa
ENSTNIG00000009892	smn1	100	67.586	ENSPLAG00000012071	smn1	100	65.172	Poecilia_latipinna
ENSTNIG00000009892	smn1	100	67.241	ENSPMEG00000017085	smn1	100	64.828	Poecilia_mexicana
ENSTNIG00000009892	smn1	100	67.241	ENSPREG00000005824	smn1	100	65.172	Poecilia_reticulata
ENSTNIG00000009892	smn1	92	47.348	ENSPPYG00000015533	-	95	47.170	Pongo_abelii
ENSTNIG00000009892	smn1	63	73.077	ENSPPYG00000019189	-	99	36.759	Pongo_abelii
ENSTNIG00000009892	smn1	91	48.014	ENSPCAG00000004187	-	98	45.000	Procavia_capensis
ENSTNIG00000009892	smn1	63	46.667	ENSPCOG00000022307	-	68	51.678	Propithecus_coquereli
ENSTNIG00000009892	smn1	95	48.201	ENSPVAG00000005977	-	92	47.183	Pteropus_vampyrus
ENSTNIG00000009892	smn1	100	70.934	ENSPNYG00000014148	smn1	100	68.858	Pundamilia_nyererei
ENSTNIG00000009892	smn1	100	59.170	ENSPNAG00000014007	smn1	85	59.786	Pygocentrus_nattereri
ENSTNIG00000009892	smn1	95	48.921	ENSRNOG00000018067	Smn1	93	48.929	Rattus_norvegicus
ENSTNIG00000009892	smn1	95	48.029	ENSRBIG00000037052	-	92	47.687	Rhinopithecus_bieti
ENSTNIG00000009892	smn1	97	46.763	ENSRBIG00000036775	-	93	47.653	Rhinopithecus_bieti
ENSTNIG00000009892	smn1	95	48.029	ENSRROG00000039399	-	93	48.529	Rhinopithecus_roxellana
ENSTNIG00000009892	smn1	95	47.232	ENSRROG00000031088	-	91	48.106	Rhinopithecus_roxellana
ENSTNIG00000009892	smn1	95	49.638	ENSSBOG00000011665	-	92	44.523	Saimiri_boliviensis_boliviensis
ENSTNIG00000009892	smn1	96	51.957	ENSSHAG00000001499	-	98	44.604	Sarcophilus_harrisii
ENSTNIG00000009892	smn1	98	56.940	ENSSFOG00015015507	smn1	97	58.007	Scleropages_formosus
ENSTNIG00000009892	smn1	100	64.460	ENSSMAG00000007922	smn1	100	68.512	Scophthalmus_maximus
ENSTNIG00000009892	smn1	100	72.165	ENSSDUG00000018533	smn1	100	69.759	Seriola_dumerili
ENSTNIG00000009892	smn1	100	72.509	ENSSLDG00000021135	smn1	100	70.103	Seriola_lalandi_dorsalis
ENSTNIG00000009892	smn1	99	51.930	ENSSPUG00000000373	-	98	47.603	Sphenodon_punctatus
ENSTNIG00000009892	smn1	100	70.000	ENSSPAG00000004345	smn1	100	68.966	Stegastes_partitus
ENSTNIG00000009892	smn1	95	48.387	ENSSSCG00000016970	-	92	48.582	Sus_scrofa
ENSTNIG00000009892	smn1	57	57.143	ENSSSCG00000029127	-	70	61.111	Sus_scrofa
ENSTNIG00000009892	smn1	92	47.601	ENSTGUG00000001548	-	96	45.149	Taeniopygia_guttata
ENSTNIG00000009892	smn1	98	74.648	ENSTRUG00000000736	smn	99	74.296	Takifugu_rubripes
ENSTNIG00000009892	smn1	95	47.670	ENSUMAG00000007842	-	70	49.110	Ursus_maritimus
ENSTNIG00000009892	smn1	57	77.778	ENSVPAG00000009887	-	59	77.778	Vicugna_pacos
ENSTNIG00000009892	smn1	95	48.057	ENSVVUG00000006934	-	93	49.470	Vulpes_vulpes
ENSTNIG00000009892	smn1	98	51.399	ENSXETG00000018189	smn2	95	48.264	Xenopus_tropicalis
ENSTNIG00000009892	smn1	100	67.241	ENSXMAG00000001521	smn1	100	65.517	Xiphophorus_maculatus