EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000010136 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 9297 bases
Position: chr20:562609-571905
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000013034	RNA_pol_Rpb1_5	PF04998.17	1.3e-101	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_4	PF05000.17	6.7e-38	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_2	PF00623.20	3.1e-75	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_3	PF04983.18	2.1e-50	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_1	PF04997.12	2.9e-106	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_7	PF04990.12	1.1e-52	1	1
ENSTNIP00000013034	RNA_pol_Rpb1_6	PF04992.14	8.6e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000013226	-	5142	-	ENSTNIP00000013034	1714 (aa)	-	H3CXP9

Gene Model

Click here to download ENSTNIG00000010136's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010136's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000010136	polr2a	75	38.639	ENSTNIG00000013151	polr3a	91	38.639
ENSTNIG00000010136	polr2a	60	32.031	ENSTNIG00000010116	polr1a	63	32.031

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010136	polr2a	100	95.929	ENSAPOG00000006552	polr2a	90	96.203	Acanthochromis_polyacanthus
ENSTNIG00000010136	polr2a	100	92.565	ENSAMEG00000016265	-	99	92.574	Ailuropoda_melanoleuca
ENSTNIG00000010136	polr2a	100	92.746	ENSACIG00000015982	polr2a	92	94.603	Amphilophus_citrinellus
ENSTNIG00000010136	polr2a	100	95.929	ENSAOCG00000004255	polr2a	88	96.203	Amphiprion_ocellaris
ENSTNIG00000010136	polr2a	100	95.929	ENSAPEG00000012623	polr2a	94	96.203	Amphiprion_percula
ENSTNIG00000010136	polr2a	100	95.528	ENSATEG00000019644	polr2a	94	95.800	Anabas_testudineus
ENSTNIG00000010136	polr2a	100	93.416	ENSACAG00000014561	POLR2A	99	93.424	Anolis_carolinensis
ENSTNIG00000010136	polr2a	100	92.924	ENSANAG00000020093	-	99	92.932	Aotus_nancymaae
ENSTNIG00000010136	polr2a	100	96.650	ENSACLG00000006735	polr2a	92	96.650	Astatotilapia_calliptera
ENSTNIG00000010136	polr2a	100	96.278	ENSAMXG00000020046	polr2a	95	96.278	Astyanax_mexicanus
ENSTNIG00000010136	polr2a	100	92.924	ENSBTAG00000046765	POLR2A	99	92.932	Bos_taurus
ENSTNIG00000010136	polr2a	100	92.862	ENSCAFG00000016532	POLR2A	99	92.870	Canis_familiaris
ENSTNIG00000010136	polr2a	100	91.998	ENSCAFG00020007929	-	99	92.007	Canis_lupus_dingo
ENSTNIG00000010136	polr2a	100	92.924	ENSCHIG00000027173	-	99	92.932	Capra_hircus
ENSTNIG00000010136	polr2a	100	92.183	ENSTSYG00000012803	-	91	90.763	Carlito_syrichta
ENSTNIG00000010136	polr2a	95	92.764	ENSCAPG00000001882	-	91	91.972	Cavia_aperea
ENSTNIG00000010136	polr2a	99	92.652	ENSCPOG00000014812	-	91	91.754	Cavia_porcellus
ENSTNIG00000010136	polr2a	100	92.924	ENSCCAG00000020938	-	99	92.932	Cebus_capucinus
ENSTNIG00000010136	polr2a	100	92.924	ENSCATG00000013680	-	99	92.932	Cercocebus_atys
ENSTNIG00000010136	polr2a	100	92.800	ENSCLAG00000012196	-	99	92.808	Chinchilla_lanigera
ENSTNIG00000010136	polr2a	100	84.269	ENSCSAG00000011644	-	99	84.350	Chlorocebus_sabaeus
ENSTNIG00000010136	polr2a	99	89.503	ENSCPBG00000012697	POLR2A	98	89.392	Chrysemys_picta_bellii
ENSTNIG00000010136	polr2a	99	75.516	ENSCING00000007884	-	98	76.176	Ciona_intestinalis
ENSTNIG00000010136	polr2a	99	74.954	ENSCSAVG00000008334	-	99	70.062	Ciona_savignyi
ENSTNIG00000010136	polr2a	100	92.241	ENSCANG00000010622	-	99	92.250	Colobus_angolensis_palliatus
ENSTNIG00000010136	polr2a	100	86.540	ENSCGRG00001003538	Polr2a	91	86.679	Cricetulus_griseus_chok1gshd
ENSTNIG00000010136	polr2a	93	89.264	ENSCGRG00000012105	Polr2a	99	89.277	Cricetulus_griseus_crigri
ENSTNIG00000010136	polr2a	100	95.782	ENSCSEG00000002635	polr2a	95	95.782	Cynoglossus_semilaevis
ENSTNIG00000010136	polr2a	100	96.650	ENSCVAG00000005156	polr2a	95	96.650	Cyprinodon_variegatus
ENSTNIG00000010136	polr2a	100	95.536	ENSDARG00000099966	polr2a	92	95.536	Danio_rerio
ENSTNIG00000010136	polr2a	100	90.130	ENSDNOG00000016482	-	99	90.205	Dasypus_novemcinctus
ENSTNIG00000010136	polr2a	100	92.924	ENSDORG00000008667	Polr2a	99	92.932	Dipodomys_ordii
ENSTNIG00000010136	polr2a	99	67.410	FBgn0003277	RpII215	97	74.099	Drosophila_melanogaster
ENSTNIG00000010136	polr2a	93	88.609	ENSETEG00000002540	-	81	90.839	Echinops_telfairi
ENSTNIG00000010136	polr2a	99	86.151	ENSEBUG00000013967	polr2a	99	86.140	Eptatretus_burgeri
ENSTNIG00000010136	polr2a	100	90.875	ENSEASG00005019114	-	99	90.887	Equus_asinus_asinus
ENSTNIG00000010136	polr2a	100	92.924	ENSECAG00000018485	POLR2A	99	92.932	Equus_caballus
ENSTNIG00000010136	polr2a	86	92.657	ENSEEUG00000001154	-	94	92.657	Erinaceus_europaeus
ENSTNIG00000010136	polr2a	100	89.655	ENSELUG00000014284	polr2a	88	91.615	Esox_lucius
ENSTNIG00000010136	polr2a	100	92.986	ENSFDAG00000008287	-	99	92.994	Fukomys_damarensis
ENSTNIG00000010136	polr2a	100	96.526	ENSFHEG00000001768	polr2a	99	96.526	Fundulus_heteroclitus
ENSTNIG00000010136	polr2a	99	91.782	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSTNIG00000010136	polr2a	100	96.650	ENSGAFG00000005389	polr2a	95	96.650	Gambusia_affinis
ENSTNIG00000010136	polr2a	99	92.866	ENSGACG00000019366	polr2a	100	92.308	Gasterosteus_aculeatus
ENSTNIG00000010136	polr2a	100	90.836	ENSGGOG00000014800	-	99	90.847	Gorilla_gorilla
ENSTNIG00000010136	polr2a	100	96.650	ENSHBUG00000018937	polr2a	96	96.650	Haplochromis_burtoni
ENSTNIG00000010136	polr2a	100	92.986	ENSHGLG00000012381	POLR2A	99	92.994	Heterocephalus_glaber_female
ENSTNIG00000010136	polr2a	100	92.986	ENSHGLG00100014843	POLR2A	99	92.994	Heterocephalus_glaber_male
ENSTNIG00000010136	polr2a	100	95.968	ENSHCOG00000011874	polr2a	95	95.968	Hippocampus_comes
ENSTNIG00000010136	polr2a	100	95.782	ENSIPUG00000002613	Polr2a	95	95.782	Ictalurus_punctatus
ENSTNIG00000010136	polr2a	100	92.924	ENSSTOG00000001304	-	99	92.932	Ictidomys_tridecemlineatus
ENSTNIG00000010136	polr2a	100	93.048	ENSJJAG00000013049	Polr2a	99	93.056	Jaculus_jaculus
ENSTNIG00000010136	polr2a	91	76.427	ENSKMAG00000016343	polr2a	85	76.813	Kryptolebias_marmoratus
ENSTNIG00000010136	polr2a	100	96.588	ENSLBEG00000027652	polr2a	92	96.588	Labrus_bergylta
ENSTNIG00000010136	polr2a	98	84.187	ENSLACG00000012071	POLR2A	99	84.260	Latimeria_chalumnae
ENSTNIG00000010136	polr2a	99	95.463	ENSLOCG00000013863	polr2a	92	95.034	Lepisosteus_oculatus
ENSTNIG00000010136	polr2a	100	92.924	ENSLAFG00000008626	-	99	92.932	Loxodonta_africana
ENSTNIG00000010136	polr2a	56	91.216	ENSMFAG00000007042	-	99	91.216	Macaca_fascicularis
ENSTNIG00000010136	polr2a	100	92.924	ENSMMUG00000023620	-	99	92.932	Macaca_mulatta
ENSTNIG00000010136	polr2a	100	92.489	ENSMNEG00000040407	-	97	92.498	Macaca_nemestrina
ENSTNIG00000010136	polr2a	98	88.481	ENSMLEG00000030263	-	99	91.216	Mandrillus_leucophaeus
ENSTNIG00000010136	polr2a	100	96.650	ENSMAMG00000003351	polr2a	92	96.650	Mastacembelus_armatus
ENSTNIG00000010136	polr2a	100	96.650	ENSMZEG00005021429	polr2a	92	96.650	Maylandia_zebra
ENSTNIG00000010136	polr2a	56	92.151	ENSMAUG00000021055	-	99	92.151	Mesocricetus_auratus
ENSTNIG00000010136	polr2a	100	92.862	ENSMICG00000013372	-	99	92.870	Microcebus_murinus
ENSTNIG00000010136	polr2a	100	88.552	ENSMOCG00000018279	Polr2a	92	88.566	Microtus_ochrogaster
ENSTNIG00000010136	polr2a	98	96.650	ENSMMOG00000012515	polr2a	92	96.650	Mola_mola
ENSTNIG00000010136	polr2a	100	92.675	ENSMODG00000007009	-	99	92.684	Monodelphis_domestica
ENSTNIG00000010136	polr2a	100	96.716	ENSMALG00000008716	polr2a	95	96.712	Monopterus_albus
ENSTNIG00000010136	polr2a	100	92.924	MGP_CAROLIEiJ_G0016587	Polr2a	99	92.932	Mus_caroli
ENSTNIG00000010136	polr2a	100	92.924	ENSMUSG00000005198	Polr2a	99	92.932	Mus_musculus
ENSTNIG00000010136	polr2a	100	90.977	MGP_PahariEiJ_G0017718	Polr2a	99	90.988	Mus_pahari
ENSTNIG00000010136	polr2a	100	92.924	MGP_SPRETEiJ_G0017423	Polr2a	99	92.932	Mus_spretus
ENSTNIG00000010136	polr2a	100	92.924	ENSMPUG00000009648	-	99	92.932	Mustela_putorius_furo
ENSTNIG00000010136	polr2a	100	92.312	ENSMLUG00000009088	-	99	92.322	Myotis_lucifugus
ENSTNIG00000010136	polr2a	100	92.924	ENSNGAG00000002543	Polr2a	99	92.932	Nannospalax_galili
ENSTNIG00000010136	polr2a	100	92.808	ENSNBRG00000002005	polr2a	92	94.603	Neolamprologus_brichardi
ENSTNIG00000010136	polr2a	100	91.455	ENSNLEG00000009460	-	99	91.466	Nomascus_leucogenys
ENSTNIG00000010136	polr2a	97	79.953	ENSMEUG00000008611	-	91	85.081	Notamacropus_eugenii
ENSTNIG00000010136	polr2a	91	92.609	ENSOPRG00000015116	-	99	92.609	Ochotona_princeps
ENSTNIG00000010136	polr2a	99	92.652	ENSODEG00000017674	-	99	85.085	Octodon_degus
ENSTNIG00000010136	polr2a	100	96.960	ENSONIG00000009231	polr2a	92	96.960	Oreochromis_niloticus
ENSTNIG00000010136	polr2a	53	91.854	ENSOANG00000003303	-	98	91.854	Ornithorhynchus_anatinus
ENSTNIG00000010136	polr2a	100	91.723	ENSOCUG00000017929	-	94	92.804	Oryctolagus_cuniculus
ENSTNIG00000010136	polr2a	100	96.402	ENSORLG00000006431	polr2a	95	96.402	Oryzias_latipes
ENSTNIG00000010136	polr2a	100	96.402	ENSORLG00020010235	polr2a	95	96.402	Oryzias_latipes_hni
ENSTNIG00000010136	polr2a	100	96.278	ENSORLG00015007075	polr2a	95	96.278	Oryzias_latipes_hsok
ENSTNIG00000010136	polr2a	99	96.266	ENSOMEG00000010713	polr2a	100	96.266	Oryzias_melastigma
ENSTNIG00000010136	polr2a	100	92.924	ENSOGAG00000033608	-	99	92.932	Otolemur_garnettii
ENSTNIG00000010136	polr2a	97	92.924	ENSOARG00000013874	-	95	92.932	Ovis_aries
ENSTNIG00000010136	polr2a	100	90.256	ENSPPAG00000043734	-	92	90.267	Pan_paniscus
ENSTNIG00000010136	polr2a	100	91.455	ENSPTRG00000008691	POLR2A	99	91.466	Pan_troglodytes
ENSTNIG00000010136	polr2a	100	92.241	ENSPANG00000024099	-	99	92.250	Papio_anubis
ENSTNIG00000010136	polr2a	98	86.289	ENSPKIG00000005727	polr2a	85	85.785	Paramormyrops_kingsleyae
ENSTNIG00000010136	polr2a	100	91.373	ENSPSIG00000014006	POLR2A	100	91.326	Pelodiscus_sinensis
ENSTNIG00000010136	polr2a	100	94.035	ENSPMGG00000019734	polr2a	99	96.287	Periophthalmus_magnuspinnatus
ENSTNIG00000010136	polr2a	100	92.924	ENSPEMG00000012521	Polr2a	99	92.932	Peromyscus_maniculatus_bairdii
ENSTNIG00000010136	polr2a	97	92.680	ENSPCIG00000028851	-	82	92.680	Phascolarctos_cinereus
ENSTNIG00000010136	polr2a	100	96.712	ENSPFOG00000007890	polr2a	97	96.712	Poecilia_formosa
ENSTNIG00000010136	polr2a	100	96.712	ENSPLAG00000007399	polr2a	97	96.712	Poecilia_latipinna
ENSTNIG00000010136	polr2a	100	96.712	ENSPMEG00000002071	polr2a	97	96.712	Poecilia_mexicana
ENSTNIG00000010136	polr2a	100	96.650	ENSPREG00000013122	polr2a	95	96.650	Poecilia_reticulata
ENSTNIG00000010136	polr2a	100	92.924	ENSPPYG00000007924	-	86	92.932	Pongo_abelii
ENSTNIG00000010136	polr2a	91	92.632	ENSPCAG00000006951	-	91	92.632	Procavia_capensis
ENSTNIG00000010136	polr2a	100	91.636	ENSPCOG00000025260	-	99	91.646	Propithecus_coquereli
ENSTNIG00000010136	polr2a	100	92.613	ENSPVAG00000005069	-	99	92.622	Pteropus_vampyrus
ENSTNIG00000010136	polr2a	100	96.712	ENSPNYG00000022340	polr2a	92	96.712	Pundamilia_nyererei
ENSTNIG00000010136	polr2a	100	96.340	ENSPNAG00000011237	polr2a	95	96.340	Pygocentrus_nattereri
ENSTNIG00000010136	polr2a	100	92.862	ENSRNOG00000028834	Polr2a	99	92.870	Rattus_norvegicus
ENSTNIG00000010136	polr2a	100	90.379	ENSRBIG00000002471	-	92	92.560	Rhinopithecus_bieti
ENSTNIG00000010136	polr2a	100	92.924	ENSRROG00000029583	-	99	92.932	Rhinopithecus_roxellana
ENSTNIG00000010136	polr2a	92	49.876	YDL140C	RPO21	99	50.152	Saccharomyces_cerevisiae
ENSTNIG00000010136	polr2a	100	92.924	ENSSBOG00000000808	-	99	92.932	Saimiri_boliviensis_boliviensis
ENSTNIG00000010136	polr2a	100	92.675	ENSSHAG00000002858	-	93	92.684	Sarcophilus_harrisii
ENSTNIG00000010136	polr2a	100	95.844	ENSSFOG00015023275	polr2a	98	95.844	Scleropages_formosus
ENSTNIG00000010136	polr2a	100	96.278	ENSSMAG00000009137	polr2a	92	96.278	Scophthalmus_maximus
ENSTNIG00000010136	polr2a	100	95.528	ENSSDUG00000020466	polr2a	94	95.800	Seriola_dumerili
ENSTNIG00000010136	polr2a	100	95.528	ENSSLDG00000020613	polr2a	94	95.800	Seriola_lalandi_dorsalis
ENSTNIG00000010136	polr2a	97	88.517	ENSSARG00000005875	-	96	89.405	Sorex_araneus
ENSTNIG00000010136	polr2a	100	96.971	ENSSPAG00000016741	polr2a	89	96.971	Stegastes_partitus
ENSTNIG00000010136	polr2a	100	91.993	ENSSSCG00000028278	-	99	92.002	Sus_scrofa
ENSTNIG00000010136	polr2a	99	78.645	ENSTRUG00000012320	polr2a	81	78.645	Takifugu_rubripes
ENSTNIG00000010136	polr2a	71	93.693	ENSTBEG00000013294	-	58	93.693	Tupaia_belangeri
ENSTNIG00000010136	polr2a	100	91.310	ENSTTRG00000014273	-	99	91.321	Tursiops_truncatus
ENSTNIG00000010136	polr2a	100	89.969	ENSUAMG00000014866	-	97	89.981	Ursus_americanus
ENSTNIG00000010136	polr2a	91	91.135	ENSUMAG00000015732	-	95	91.149	Ursus_maritimus
ENSTNIG00000010136	polr2a	57	97.283	ENSVPAG00000008842	-	76	97.283	Vicugna_pacos
ENSTNIG00000010136	polr2a	100	92.862	ENSVVUG00000027878	-	92	92.870	Vulpes_vulpes
ENSTNIG00000010136	polr2a	99	92.763	ENSXETG00000012465	polr2a	99	92.772	Xenopus_tropicalis
ENSTNIG00000010136	polr2a	97	92.560	ENSXCOG00000001804	polr2a	97	94.355	Xiphophorus_couchianus
ENSTNIG00000010136	polr2a	100	96.650	ENSXMAG00000015687	polr2a	95	96.650	Xiphophorus_maculatus