EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000010191 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 1403 bases
Position: chr1:19482120-19483522
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000013090	LSM	PF01423.22	7.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000013282	-	515	-	ENSTNIP00000013090	144 (aa)	-	H3CXV5

Gene Model

Click here to download ENSTNIG00000010191's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010191's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000010191	lsm4	79	30.702	ENSTNIG00000005323	snrpd3l	91	31.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010191	lsm4	61	97.727	ENSG00000130520	LSM4	99	80.714	Homo_sapiens
ENSTNIG00000010191	lsm4	100	84.211	ENSAPOG00000005643	lsm4	100	84.211	Acanthochromis_polyacanthus
ENSTNIG00000010191	lsm4	60	97.701	ENSAMEG00000011162	LSM4	93	80.576	Ailuropoda_melanoleuca
ENSTNIG00000010191	lsm4	100	85.906	ENSAOCG00000006414	lsm4	100	85.906	Amphiprion_ocellaris
ENSTNIG00000010191	lsm4	100	85.333	ENSAPEG00000006238	lsm4	100	85.333	Amphiprion_percula
ENSTNIG00000010191	lsm4	100	82.353	ENSATEG00000016559	lsm4	100	82.353	Anabas_testudineus
ENSTNIG00000010191	lsm4	61	97.727	ENSANAG00000034659	LSM4	99	80.714	Aotus_nancymaae
ENSTNIG00000010191	lsm4	100	88.514	ENSACLG00000022738	lsm4	100	89.189	Astatotilapia_calliptera
ENSTNIG00000010191	lsm4	100	90.972	ENSAMXG00000016932	lsm4	100	90.972	Astyanax_mexicanus
ENSTNIG00000010191	lsm4	61	97.727	ENSBTAG00000008578	LSM4	99	80.714	Bos_taurus
ENSTNIG00000010191	lsm4	58	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSTNIG00000010191	lsm4	61	97.727	ENSCJAG00000014171	LSM4	99	80.714	Callithrix_jacchus
ENSTNIG00000010191	lsm4	61	97.727	ENSCAFG00000014900	LSM4	90	80.714	Canis_familiaris
ENSTNIG00000010191	lsm4	61	97.727	ENSCAFG00020012137	LSM4	99	80.714	Canis_lupus_dingo
ENSTNIG00000010191	lsm4	60	97.701	ENSCHIG00000010928	LSM4	90	80.576	Capra_hircus
ENSTNIG00000010191	lsm4	61	96.591	ENSTSYG00000030906	LSM4	99	80.000	Carlito_syrichta
ENSTNIG00000010191	lsm4	61	96.591	ENSCAPG00000014140	LSM4	96	81.022	Cavia_aperea
ENSTNIG00000010191	lsm4	61	96.591	ENSCPOG00000024117	LSM4	96	81.022	Cavia_porcellus
ENSTNIG00000010191	lsm4	61	97.727	ENSCCAG00000036308	LSM4	99	80.714	Cebus_capucinus
ENSTNIG00000010191	lsm4	61	97.727	ENSCATG00000029311	LSM4	99	80.714	Cercocebus_atys
ENSTNIG00000010191	lsm4	61	97.727	ENSCLAG00000010828	LSM4	99	80.714	Chinchilla_lanigera
ENSTNIG00000010191	lsm4	61	97.727	ENSCSAG00000005370	LSM4	99	80.714	Chlorocebus_sabaeus
ENSTNIG00000010191	lsm4	94	84.559	ENSCPBG00000012925	LSM4	96	84.559	Chrysemys_picta_bellii
ENSTNIG00000010191	lsm4	60	93.023	ENSCING00000007519	-	91	76.800	Ciona_intestinalis
ENSTNIG00000010191	lsm4	60	93.023	ENSCSAVG00000008596	-	98	73.881	Ciona_savignyi
ENSTNIG00000010191	lsm4	61	97.727	ENSCANG00000043686	LSM4	99	80.714	Colobus_angolensis_palliatus
ENSTNIG00000010191	lsm4	61	95.455	ENSCGRG00001014436	Lsm4	99	79.286	Cricetulus_griseus_chok1gshd
ENSTNIG00000010191	lsm4	60	95.402	ENSCGRG00000009398	Lsm4	99	79.137	Cricetulus_griseus_crigri
ENSTNIG00000010191	lsm4	100	85.417	ENSCSEG00000016127	lsm4	100	89.583	Cynoglossus_semilaevis
ENSTNIG00000010191	lsm4	100	88.194	ENSCVAG00000010601	lsm4	100	88.194	Cyprinodon_variegatus
ENSTNIG00000010191	lsm4	90	89.922	ENSCVAG00000021828	lsm4	98	86.822	Cyprinodon_variegatus
ENSTNIG00000010191	lsm4	96	85.417	ENSDARG00000023852	lsm4	99	86.111	Danio_rerio
ENSTNIG00000010191	lsm4	61	97.727	ENSDORG00000024225	Lsm4	99	80.714	Dipodomys_ordii
ENSTNIG00000010191	lsm4	69	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSTNIG00000010191	lsm4	51	95.890	ENSETEG00000007762	-	98	78.400	Echinops_telfairi
ENSTNIG00000010191	lsm4	56	88.750	ENSEBUG00000003639	-	85	68.750	Eptatretus_burgeri
ENSTNIG00000010191	lsm4	61	97.727	ENSECAG00000010141	LSM4	56	80.714	Equus_caballus
ENSTNIG00000010191	lsm4	93	88.806	ENSELUG00000012821	lsm4	100	87.313	Esox_lucius
ENSTNIG00000010191	lsm4	61	97.727	ENSFCAG00000040580	LSM4	99	80.714	Felis_catus
ENSTNIG00000010191	lsm4	94	83.704	ENSFALG00000009478	LSM4	96	83.704	Ficedula_albicollis
ENSTNIG00000010191	lsm4	60	97.701	ENSFDAG00000010124	LSM4	99	80.576	Fukomys_damarensis
ENSTNIG00000010191	lsm4	99	80.272	ENSGMOG00000007729	lsm4	99	81.757	Gadus_morhua
ENSTNIG00000010191	lsm4	94	83.824	ENSGALG00000003385	LSM4	96	83.824	Gallus_gallus
ENSTNIG00000010191	lsm4	100	91.667	ENSGAFG00000004903	lsm4	97	86.822	Gambusia_affinis
ENSTNIG00000010191	lsm4	100	84.667	ENSGACG00000008140	lsm4	100	86.667	Gasterosteus_aculeatus
ENSTNIG00000010191	lsm4	94	84.559	ENSGAGG00000017812	LSM4	96	84.559	Gopherus_agassizii
ENSTNIG00000010191	lsm4	61	97.727	ENSGGOG00000012914	-	99	80.714	Gorilla_gorilla
ENSTNIG00000010191	lsm4	100	89.116	ENSHBUG00000008858	lsm4	80	89.796	Haplochromis_burtoni
ENSTNIG00000010191	lsm4	97	78.571	ENSHGLG00000006568	LSM4	99	81.429	Heterocephalus_glaber_female
ENSTNIG00000010191	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSTNIG00000010191	lsm4	100	88.194	ENSHCOG00000008819	lsm4	100	88.194	Hippocampus_comes
ENSTNIG00000010191	lsm4	100	89.583	ENSIPUG00000005368	Lsm4	100	89.583	Ictalurus_punctatus
ENSTNIG00000010191	lsm4	61	97.727	ENSSTOG00000016494	LSM4	99	80.714	Ictidomys_tridecemlineatus
ENSTNIG00000010191	lsm4	61	95.455	ENSJJAG00000017420	Lsm4	99	79.286	Jaculus_jaculus
ENSTNIG00000010191	lsm4	100	88.966	ENSKMAG00000005073	lsm4	100	86.897	Kryptolebias_marmoratus
ENSTNIG00000010191	lsm4	100	85.333	ENSLBEG00000027930	lsm4	100	85.333	Labrus_bergylta
ENSTNIG00000010191	lsm4	61	98.864	ENSLACG00000015861	LSM4	99	83.099	Latimeria_chalumnae
ENSTNIG00000010191	lsm4	89	90.625	ENSLOCG00000002025	lsm4	100	86.806	Lepisosteus_oculatus
ENSTNIG00000010191	lsm4	60	96.552	ENSLAFG00000017459	LSM4	98	80.576	Loxodonta_africana
ENSTNIG00000010191	lsm4	61	97.727	ENSMFAG00000031194	LSM4	99	80.714	Macaca_fascicularis
ENSTNIG00000010191	lsm4	61	97.727	ENSMMUG00000004405	LSM4	99	80.714	Macaca_mulatta
ENSTNIG00000010191	lsm4	61	97.727	ENSMNEG00000042899	LSM4	99	80.714	Macaca_nemestrina
ENSTNIG00000010191	lsm4	61	97.727	ENSMLEG00000027948	LSM4	99	80.714	Mandrillus_leucophaeus
ENSTNIG00000010191	lsm4	100	88.889	ENSMAMG00000006190	lsm4	100	88.889	Mastacembelus_armatus
ENSTNIG00000010191	lsm4	100	89.116	ENSMZEG00005016420	lsm4	100	89.796	Maylandia_zebra
ENSTNIG00000010191	lsm4	94	83.088	ENSMGAG00000004976	LSM4	96	86.029	Meleagris_gallopavo
ENSTNIG00000010191	lsm4	69	94.949	ENSMICG00000000222	LSM4	99	80.000	Microcebus_murinus
ENSTNIG00000010191	lsm4	61	95.455	ENSMOCG00000020861	Lsm4	99	79.286	Microtus_ochrogaster
ENSTNIG00000010191	lsm4	51	98.630	ENSMODG00000015044	-	98	80.000	Monodelphis_domestica
ENSTNIG00000010191	lsm4	100	90.278	ENSMALG00000018159	lsm4	100	86.111	Monopterus_albus
ENSTNIG00000010191	lsm4	61	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	79.286	Mus_caroli
ENSTNIG00000010191	lsm4	61	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSTNIG00000010191	lsm4	61	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	79.286	Mus_pahari
ENSTNIG00000010191	lsm4	61	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	79.286	Mus_spretus
ENSTNIG00000010191	lsm4	61	97.727	ENSMPUG00000015589	LSM4	99	80.714	Mustela_putorius_furo
ENSTNIG00000010191	lsm4	60	97.701	ENSMLUG00000004010	LSM4	98	80.576	Myotis_lucifugus
ENSTNIG00000010191	lsm4	61	95.455	ENSNGAG00000008644	Lsm4	99	79.286	Nannospalax_galili
ENSTNIG00000010191	lsm4	74	97.196	ENSNBRG00000022150	lsm4	66	97.196	Neolamprologus_brichardi
ENSTNIG00000010191	lsm4	51	94.521	ENSMEUG00000013229	LSM4	98	75.200	Notamacropus_eugenii
ENSTNIG00000010191	lsm4	53	98.701	ENSOPRG00000005575	LSM4	98	77.600	Ochotona_princeps
ENSTNIG00000010191	lsm4	61	87.500	ENSODEG00000004519	-	99	72.662	Octodon_degus
ENSTNIG00000010191	lsm4	97	60.284	ENSODEG00000011712	-	98	60.284	Octodon_degus
ENSTNIG00000010191	lsm4	61	97.727	ENSODEG00000020549	-	99	80.714	Octodon_degus
ENSTNIG00000010191	lsm4	100	88.514	ENSONIG00000012724	lsm4	100	89.189	Oreochromis_niloticus
ENSTNIG00000010191	lsm4	60	93.407	ENSOANG00000007434	LSM4	97	78.906	Ornithorhynchus_anatinus
ENSTNIG00000010191	lsm4	100	87.586	ENSORLG00000008391	lsm4	100	87.586	Oryzias_latipes
ENSTNIG00000010191	lsm4	100	88.276	ENSORLG00020014829	lsm4	100	88.276	Oryzias_latipes_hni
ENSTNIG00000010191	lsm4	100	87.586	ENSORLG00015010205	lsm4	100	87.586	Oryzias_latipes_hsok
ENSTNIG00000010191	lsm4	100	87.586	ENSOMEG00000003606	lsm4	100	87.586	Oryzias_melastigma
ENSTNIG00000010191	lsm4	68	94.898	ENSOGAG00000027992	LSM4	92	80.741	Otolemur_garnettii
ENSTNIG00000010191	lsm4	60	97.701	ENSOARG00000012553	LSM4	94	80.435	Ovis_aries
ENSTNIG00000010191	lsm4	61	97.727	ENSPPAG00000044045	-	99	80.714	Pan_paniscus
ENSTNIG00000010191	lsm4	61	97.727	ENSPPRG00000018264	LSM4	99	80.714	Panthera_pardus
ENSTNIG00000010191	lsm4	60	97.701	ENSPTIG00000006306	LSM4	99	80.576	Panthera_tigris_altaica
ENSTNIG00000010191	lsm4	61	97.727	ENSPTRG00000031470	LSM4	99	80.714	Pan_troglodytes
ENSTNIG00000010191	lsm4	61	97.727	ENSPANG00000014399	LSM4	99	80.714	Papio_anubis
ENSTNIG00000010191	lsm4	100	87.500	ENSPKIG00000006154	lsm4	100	87.500	Paramormyrops_kingsleyae
ENSTNIG00000010191	lsm4	94	83.704	ENSPSIG00000012358	LSM4	96	83.704	Pelodiscus_sinensis
ENSTNIG00000010191	lsm4	61	95.455	ENSPEMG00000001358	Lsm4	99	79.286	Peromyscus_maniculatus_bairdii
ENSTNIG00000010191	lsm4	100	90.972	ENSPFOG00000000570	lsm4	76	88.889	Poecilia_formosa
ENSTNIG00000010191	lsm4	100	92.361	ENSPLAG00000016267	lsm4	100	88.889	Poecilia_latipinna
ENSTNIG00000010191	lsm4	100	88.889	ENSPMEG00000016378	lsm4	100	88.889	Poecilia_mexicana
ENSTNIG00000010191	lsm4	100	90.972	ENSPREG00000011290	lsm4	76	88.889	Poecilia_reticulata
ENSTNIG00000010191	lsm4	61	97.727	ENSPPYG00000009736	LSM4	99	80.714	Pongo_abelii
ENSTNIG00000010191	lsm4	51	95.890	ENSPCAG00000008513	LSM4	98	78.400	Procavia_capensis
ENSTNIG00000010191	lsm4	69	94.949	ENSPCOG00000019837	LSM4	99	80.000	Propithecus_coquereli
ENSTNIG00000010191	lsm4	61	97.727	ENSPVAG00000015383	LSM4	99	80.714	Pteropus_vampyrus
ENSTNIG00000010191	lsm4	100	89.116	ENSPNYG00000016794	lsm4	100	89.796	Pundamilia_nyererei
ENSTNIG00000010191	lsm4	95	86.861	ENSPNAG00000016598	lsm4	100	86.861	Pygocentrus_nattereri
ENSTNIG00000010191	lsm4	61	95.455	ENSRNOG00000019572	Lsm4	99	79.286	Rattus_norvegicus
ENSTNIG00000010191	lsm4	61	97.727	ENSRBIG00000024717	LSM4	99	80.714	Rhinopithecus_bieti
ENSTNIG00000010191	lsm4	61	97.727	ENSRROG00000045706	LSM4	99	80.714	Rhinopithecus_roxellana
ENSTNIG00000010191	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSTNIG00000010191	lsm4	51	97.297	ENSSBOG00000022455	LSM4	98	78.571	Saimiri_boliviensis_boliviensis
ENSTNIG00000010191	lsm4	61	98.864	ENSSHAG00000011559	LSM4	99	82.143	Sarcophilus_harrisii
ENSTNIG00000010191	lsm4	100	88.194	ENSSFOG00015021067	lsm4	100	88.194	Scleropages_formosus
ENSTNIG00000010191	lsm4	100	76.667	ENSSMAG00000021020	lsm4	100	83.444	Scophthalmus_maximus
ENSTNIG00000010191	lsm4	100	76.786	ENSSDUG00000009588	lsm4	100	80.952	Seriola_dumerili
ENSTNIG00000010191	lsm4	100	76.331	ENSSLDG00000006827	lsm4	100	80.473	Seriola_lalandi_dorsalis
ENSTNIG00000010191	lsm4	60	98.851	ENSSPUG00000010166	LSM4	70	82.258	Sphenodon_punctatus
ENSTNIG00000010191	lsm4	100	84.211	ENSSPAG00000011615	lsm4	100	84.211	Stegastes_partitus
ENSTNIG00000010191	lsm4	61	97.727	ENSSSCG00000034314	LSM4	99	80.714	Sus_scrofa
ENSTNIG00000010191	lsm4	100	96.528	ENSTRUG00000021737	lsm4	100	96.528	Takifugu_rubripes
ENSTNIG00000010191	lsm4	61	97.727	ENSUAMG00000000665	LSM4	98	80.576	Ursus_americanus
ENSTNIG00000010191	lsm4	61	97.727	ENSUMAG00000009013	LSM4	99	80.714	Ursus_maritimus
ENSTNIG00000010191	lsm4	60	97.701	ENSVVUG00000008136	LSM4	70	80.576	Vulpes_vulpes
ENSTNIG00000010191	lsm4	68	96.939	ENSXETG00000024933	lsm4	99	82.734	Xenopus_tropicalis
ENSTNIG00000010191	lsm4	100	90.972	ENSXMAG00000026672	lsm4	76	88.889	Xiphophorus_maculatus