EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000010303 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 8997 bases
Position: chrUn_random:28917050-28926046
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000002041	EST1	PF10374.9	1.5e-23	1	1
ENSTNIP00000013207	EST1	PF10374.9	1.7e-23	1	1
ENSTNIP00000002041	EST1_DNA_bind	PF10373.9	6.5e-43	1	1
ENSTNIP00000013207	EST1_DNA_bind	PF10373.9	6.1e-42	1	1
ENSTNIP00000002041	PIN_4	PF13638.6	1.6e-07	1	1
ENSTNIP00000013207	PIN_4	PF13638.6	1.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000013399	-	3366	-	ENSTNIP00000013207	1121 (aa)	-	H3CY72
ENSTNIT00000001233	-	3090	-	ENSTNIP00000002041	1029 (aa)	-	H3C1C5

Gene Model

Click here to download ENSTNIG00000010303's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010303's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010303	smg5	99	65.276	ENSG00000198952	SMG5	99	65.504	Homo_sapiens
ENSTNIG00000010303	smg5	100	82.099	ENSAPOG00000019690	smg5	100	82.558	Acanthochromis_polyacanthus
ENSTNIG00000010303	smg5	98	63.142	ENSAMEG00000014458	SMG5	100	62.956	Ailuropoda_melanoleuca
ENSTNIG00000010303	smg5	99	80.861	ENSACIG00000001353	smg5	99	81.489	Amphilophus_citrinellus
ENSTNIG00000010303	smg5	100	82.099	ENSAOCG00000019483	smg5	100	82.099	Amphiprion_ocellaris
ENSTNIG00000010303	smg5	100	82.099	ENSAPEG00000022949	smg5	100	82.099	Amphiprion_percula
ENSTNIG00000010303	smg5	99	81.627	ENSATEG00000005348	smg5	99	82.854	Anabas_testudineus
ENSTNIG00000010303	smg5	98	65.251	ENSAPLG00000010263	SMG5	100	65.251	Anas_platyrhynchos
ENSTNIG00000010303	smg5	99	65.179	ENSANAG00000032899	SMG5	99	65.310	Aotus_nancymaae
ENSTNIG00000010303	smg5	99	80.784	ENSACLG00000009311	smg5	99	81.071	Astatotilapia_calliptera
ENSTNIG00000010303	smg5	100	74.602	ENSAMXG00000024616	smg5	100	73.656	Astyanax_mexicanus
ENSTNIG00000010303	smg5	99	64.985	ENSBTAG00000009435	SMG5	99	65.116	Bos_taurus
ENSTNIG00000010303	smg5	91	48.694	ENSBTAG00000021747	-	92	48.219	Bos_taurus
ENSTNIG00000010303	smg5	99	65.179	ENSCJAG00000005684	SMG5	99	65.310	Callithrix_jacchus
ENSTNIG00000010303	smg5	92	74.074	ENSCAFG00000016839	SMG5	99	64.888	Canis_familiaris
ENSTNIG00000010303	smg5	92	74.074	ENSCAFG00020006061	SMG5	99	64.888	Canis_lupus_dingo
ENSTNIG00000010303	smg5	90	49.034	ENSCHIG00000006323	-	92	48.551	Capra_hircus
ENSTNIG00000010303	smg5	99	65.243	ENSCHIG00000007709	SMG5	99	65.373	Capra_hircus
ENSTNIG00000010303	smg5	99	64.403	ENSTSYG00000004099	SMG5	99	65.053	Carlito_syrichta
ENSTNIG00000010303	smg5	95	49.796	ENSCAPG00000003631	SMG5	100	50.256	Cavia_aperea
ENSTNIG00000010303	smg5	99	65.276	ENSCPOG00000015696	SMG5	99	65.601	Cavia_porcellus
ENSTNIG00000010303	smg5	99	65.049	ENSCCAG00000027409	SMG5	99	65.179	Cebus_capucinus
ENSTNIG00000010303	smg5	99	65.082	ENSCATG00000030539	SMG5	99	65.310	Cercocebus_atys
ENSTNIG00000010303	smg5	99	64.951	ENSCLAG00000003983	SMG5	99	65.276	Chinchilla_lanigera
ENSTNIG00000010303	smg5	99	65.082	ENSCSAG00000002120	SMG5	99	65.310	Chlorocebus_sabaeus
ENSTNIG00000010303	smg5	53	72.924	ENSCHOG00000008741	-	57	72.924	Choloepus_hoffmanni
ENSTNIG00000010303	smg5	94	64.510	ENSCPBG00000025848	SMG5	100	65.365	Chrysemys_picta_bellii
ENSTNIG00000010303	smg5	93	33.976	ENSCING00000008706	-	98	33.704	Ciona_intestinalis
ENSTNIG00000010303	smg5	99	62.561	ENSCANG00000029208	SMG5	99	62.791	Colobus_angolensis_palliatus
ENSTNIG00000010303	smg5	99	65.116	ENSCGRG00001006336	Smg5	99	65.116	Cricetulus_griseus_chok1gshd
ENSTNIG00000010303	smg5	98	65.089	ENSCGRG00000005111	Smg5	100	64.921	Cricetulus_griseus_crigri
ENSTNIG00000010303	smg5	99	78.978	ENSCSEG00000014220	smg5	99	79.043	Cynoglossus_semilaevis
ENSTNIG00000010303	smg5	100	73.147	ENSCVAG00000000529	smg5	100	73.821	Cyprinodon_variegatus
ENSTNIG00000010303	smg5	100	73.652	ENSDARG00000041481	smg5	100	73.369	Danio_rerio
ENSTNIG00000010303	smg5	92	32.177	ENSDNOG00000039862	-	99	31.799	Dasypus_novemcinctus
ENSTNIG00000010303	smg5	99	62.536	ENSDNOG00000000051	SMG5	99	62.512	Dasypus_novemcinctus
ENSTNIG00000010303	smg5	99	65.019	ENSDORG00000010382	Smg5	99	65.247	Dipodomys_ordii
ENSTNIG00000010303	smg5	74	84.466	ENSETEG00000010336	SMG5	81	84.466	Echinops_telfairi
ENSTNIG00000010303	smg5	91	44.806	ENSEBUG00000003739	smg5	99	44.363	Eptatretus_burgeri
ENSTNIG00000010303	smg5	93	75.459	ENSEASG00005019122	SMG5	99	65.116	Equus_asinus_asinus
ENSTNIG00000010303	smg5	99	64.791	ENSECAG00000001389	SMG5	99	65.116	Equus_caballus
ENSTNIG00000010303	smg5	71	77.810	ENSEEUG00000012690	SMG5	75	77.810	Erinaceus_europaeus
ENSTNIG00000010303	smg5	100	75.505	ENSELUG00000012585	smg5	99	76.341	Esox_lucius
ENSTNIG00000010303	smg5	92	74.596	ENSFCAG00000011783	SMG5	99	64.008	Felis_catus
ENSTNIG00000010303	smg5	57	67.446	ENSFALG00000001166	-	96	67.446	Ficedula_albicollis
ENSTNIG00000010303	smg5	98	64.321	ENSFDAG00000017388	SMG5	100	64.321	Fukomys_damarensis
ENSTNIG00000010303	smg5	86	86.392	ENSFHEG00000013939	smg5	95	86.392	Fundulus_heteroclitus
ENSTNIG00000010303	smg5	100	74.019	ENSGMOG00000007310	smg5	100	75.548	Gadus_morhua
ENSTNIG00000010303	smg5	99	65.005	ENSGALG00000029918	-	100	64.489	Gallus_gallus
ENSTNIG00000010303	smg5	93	86.306	ENSGAFG00000021691	smg5	99	86.306	Gambusia_affinis
ENSTNIG00000010303	smg5	100	79.701	ENSGACG00000013142	smg5	100	79.350	Gasterosteus_aculeatus
ENSTNIG00000010303	smg5	99	65.747	ENSGAGG00000016131	SMG5	99	65.750	Gopherus_agassizii
ENSTNIG00000010303	smg5	99	65.179	ENSGGOG00000010932	SMG5	99	65.310	Gorilla_gorilla
ENSTNIG00000010303	smg5	99	81.071	ENSHBUG00000008654	smg5	99	81.358	Haplochromis_burtoni
ENSTNIG00000010303	smg5	99	64.175	ENSHGLG00000019152	SMG5	99	64.403	Heterocephalus_glaber_female
ENSTNIG00000010303	smg5	90	65.011	ENSHGLG00100015948	SMG5	99	65.264	Heterocephalus_glaber_male
ENSTNIG00000010303	smg5	86	79.167	ENSHCOG00000010229	smg5	93	79.167	Hippocampus_comes
ENSTNIG00000010303	smg5	100	72.487	ENSIPUG00000006624	Smg5	100	72.298	Ictalurus_punctatus
ENSTNIG00000010303	smg5	99	65.276	ENSSTOG00000001780	SMG5	99	65.276	Ictidomys_tridecemlineatus
ENSTNIG00000010303	smg5	99	65.276	ENSJJAG00000022763	Smg5	99	65.276	Jaculus_jaculus
ENSTNIG00000010303	smg5	100	79.648	ENSKMAG00000014586	smg5	100	80.352	Kryptolebias_marmoratus
ENSTNIG00000010303	smg5	100	80.671	ENSLBEG00000002145	smg5	100	81.289	Labrus_bergylta
ENSTNIG00000010303	smg5	99	59.848	ENSLACG00000010521	SMG5	99	59.829	Latimeria_chalumnae
ENSTNIG00000010303	smg5	100	64.085	ENSLAFG00000006241	SMG5	100	63.645	Loxodonta_africana
ENSTNIG00000010303	smg5	99	65.082	ENSMFAG00000045357	SMG5	99	65.310	Macaca_fascicularis
ENSTNIG00000010303	smg5	92	74.713	ENSMMUG00000000090	SMG5	99	65.310	Macaca_mulatta
ENSTNIG00000010303	smg5	99	65.179	ENSMNEG00000044425	SMG5	99	65.407	Macaca_nemestrina
ENSTNIG00000010303	smg5	99	59.961	ENSMLEG00000041192	SMG5	99	60.193	Mandrillus_leucophaeus
ENSTNIG00000010303	smg5	100	81.938	ENSMAMG00000010683	smg5	100	82.026	Mastacembelus_armatus
ENSTNIG00000010303	smg5	99	76.588	ENSMZEG00005015815	smg5	99	76.967	Maylandia_zebra
ENSTNIG00000010303	smg5	63	74.775	ENSMZEG00005016543	smg5	100	76.126	Maylandia_zebra
ENSTNIG00000010303	smg5	99	64.961	ENSMAUG00000010381	Smg5	99	65.154	Mesocricetus_auratus
ENSTNIG00000010303	smg5	99	64.981	ENSMICG00000002257	SMG5	99	65.112	Microcebus_murinus
ENSTNIG00000010303	smg5	99	64.210	ENSMOCG00000016590	Smg5	99	64.466	Microtus_ochrogaster
ENSTNIG00000010303	smg5	100	77.993	ENSMMOG00000017199	smg5	100	78.081	Mola_mola
ENSTNIG00000010303	smg5	97	30.929	ENSMODG00000004511	-	99	30.929	Monodelphis_domestica
ENSTNIG00000010303	smg5	81	74.541	ENSMODG00000016901	SMG5	98	66.073	Monodelphis_domestica
ENSTNIG00000010303	smg5	76	36.010	ENSMODG00000004532	-	85	36.010	Monodelphis_domestica
ENSTNIG00000010303	smg5	77	33.582	ENSMODG00000010675	-	87	33.582	Monodelphis_domestica
ENSTNIG00000010303	smg5	75	35.310	ENSMODG00000004735	-	87	35.310	Monodelphis_domestica
ENSTNIG00000010303	smg5	100	80.159	ENSMALG00000010375	smg5	100	79.982	Monopterus_albus
ENSTNIG00000010303	smg5	99	65.370	MGP_CAROLIEiJ_G0025163	Smg5	100	87.709	Mus_caroli
ENSTNIG00000010303	smg5	99	65.179	ENSMUSG00000001415	Smg5	99	87.709	Mus_musculus
ENSTNIG00000010303	smg5	99	65.116	MGP_PahariEiJ_G0026606	Smg5	100	88.268	Mus_pahari
ENSTNIG00000010303	smg5	99	65.175	MGP_SPRETEiJ_G0026104	Smg5	100	87.709	Mus_spretus
ENSTNIG00000010303	smg5	87	73.118	ENSMPUG00000004546	SMG5	100	63.223	Mustela_putorius_furo
ENSTNIG00000010303	smg5	99	64.451	ENSMLUG00000008518	SMG5	99	64.638	Myotis_lucifugus
ENSTNIG00000010303	smg5	99	64.175	ENSNGAG00000020706	Smg5	99	64.791	Nannospalax_galili
ENSTNIG00000010303	smg5	99	37.767	ENSNGAG00000012101	-	92	47.596	Nannospalax_galili
ENSTNIG00000010303	smg5	97	75.719	ENSNBRG00000004332	smg5	98	76.809	Neolamprologus_brichardi
ENSTNIG00000010303	smg5	99	64.985	ENSNLEG00000012439	SMG5	99	65.116	Nomascus_leucogenys
ENSTNIG00000010303	smg5	99	64.043	ENSMEUG00000012834	SMG5	99	64.334	Notamacropus_eugenii
ENSTNIG00000010303	smg5	99	64.507	ENSOPRG00000009152	SMG5	99	64.700	Ochotona_princeps
ENSTNIG00000010303	smg5	99	65.150	ENSODEG00000012237	SMG5	99	65.767	Octodon_degus
ENSTNIG00000010303	smg5	100	79.683	ENSONIG00000008632	smg5	100	80.211	Oreochromis_niloticus
ENSTNIG00000010303	smg5	90	36.547	ENSOCUG00000023338	-	99	36.093	Oryctolagus_cuniculus
ENSTNIG00000010303	smg5	98	64.916	ENSOCUG00000012886	SMG5	100	64.950	Oryctolagus_cuniculus
ENSTNIG00000010303	smg5	100	78.565	ENSORLG00000016239	smg5	100	78.571	Oryzias_latipes
ENSTNIG00000010303	smg5	100	79.255	ENSORLG00020013127	smg5	100	79.170	Oryzias_latipes_hni
ENSTNIG00000010303	smg5	100	79.078	ENSORLG00015019014	smg5	100	79.170	Oryzias_latipes_hsok
ENSTNIG00000010303	smg5	84	76.737	ENSOMEG00000021330	smg5	92	77.487	Oryzias_melastigma
ENSTNIG00000010303	smg5	99	64.689	ENSOGAG00000004966	SMG5	99	65.116	Otolemur_garnettii
ENSTNIG00000010303	smg5	99	65.243	ENSOARG00000005778	SMG5	99	65.373	Ovis_aries
ENSTNIG00000010303	smg5	91	49.057	ENSOARG00000011963	-	92	48.821	Ovis_aries
ENSTNIG00000010303	smg5	99	65.179	ENSPPAG00000011996	SMG5	99	65.407	Pan_paniscus
ENSTNIG00000010303	smg5	91	74.396	ENSPPRG00000011901	SMG5	100	63.861	Panthera_pardus
ENSTNIG00000010303	smg5	97	59.600	ENSPTIG00000007892	SMG5	98	60.000	Panthera_tigris_altaica
ENSTNIG00000010303	smg5	99	65.179	ENSPTRG00000023925	SMG5	99	65.407	Pan_troglodytes
ENSTNIG00000010303	smg5	87	77.586	ENSPTRG00000049282	-	99	65.407	Pan_troglodytes
ENSTNIG00000010303	smg5	99	65.082	ENSPANG00000011201	SMG5	99	65.310	Papio_anubis
ENSTNIG00000010303	smg5	99	74.687	ENSPKIG00000009402	smg5	99	74.759	Paramormyrops_kingsleyae
ENSTNIG00000010303	smg5	98	66.176	ENSPSIG00000015198	SMG5	100	66.148	Pelodiscus_sinensis
ENSTNIG00000010303	smg5	100	70.249	ENSPMGG00000010465	smg5	100	70.147	Periophthalmus_magnuspinnatus
ENSTNIG00000010303	smg5	99	65.175	ENSPEMG00000001819	Smg5	99	65.175	Peromyscus_maniculatus_bairdii
ENSTNIG00000010303	smg5	99	48.769	ENSPMAG00000000410	smg5	99	49.715	Petromyzon_marinus
ENSTNIG00000010303	smg5	99	64.752	ENSPCIG00000018938	SMG5	99	65.625	Phascolarctos_cinereus
ENSTNIG00000010303	smg5	100	78.817	ENSPFOG00000010191	smg5	100	79.329	Poecilia_formosa
ENSTNIG00000010303	smg5	100	78.338	ENSPLAG00000009332	smg5	100	79.152	Poecilia_latipinna
ENSTNIG00000010303	smg5	100	79.638	ENSPMEG00000014105	smg5	100	80.550	Poecilia_mexicana
ENSTNIG00000010303	smg5	100	78.691	ENSPREG00000017713	smg5	100	79.435	Poecilia_reticulata
ENSTNIG00000010303	smg5	99	65.179	ENSPPYG00000000723	SMG5	99	65.310	Pongo_abelii
ENSTNIG00000010303	smg5	75	78.889	ENSPCAG00000008412	SMG5	81	78.889	Procavia_capensis
ENSTNIG00000010303	smg5	99	64.883	ENSPCOG00000004741	SMG5	99	65.015	Propithecus_coquereli
ENSTNIG00000010303	smg5	99	58.544	ENSPVAG00000016748	SMG5	99	58.584	Pteropus_vampyrus
ENSTNIG00000010303	smg5	100	79.141	ENSPNYG00000013397	smg5	100	79.930	Pundamilia_nyererei
ENSTNIG00000010303	smg5	100	73.894	ENSPNAG00000028363	smg5	100	73.810	Pygocentrus_nattereri
ENSTNIG00000010303	smg5	99	64.981	ENSRNOG00000019590	Smg5	99	65.078	Rattus_norvegicus
ENSTNIG00000010303	smg5	99	64.985	ENSRBIG00000027428	SMG5	99	65.213	Rhinopithecus_bieti
ENSTNIG00000010303	smg5	99	64.888	ENSRROG00000030035	SMG5	99	65.116	Rhinopithecus_roxellana
ENSTNIG00000010303	smg5	99	65.146	ENSSBOG00000033339	SMG5	99	65.276	Saimiri_boliviensis_boliviensis
ENSTNIG00000010303	smg5	76	41.379	ENSSHAG00000009572	-	82	39.480	Sarcophilus_harrisii
ENSTNIG00000010303	smg5	81	33.047	ENSSHAG00000000561	-	98	33.047	Sarcophilus_harrisii
ENSTNIG00000010303	smg5	54	37.760	ENSSHAG00000000935	-	79	37.760	Sarcophilus_harrisii
ENSTNIG00000010303	smg5	98	64.405	ENSSHAG00000014163	SMG5	100	65.286	Sarcophilus_harrisii
ENSTNIG00000010303	smg5	99	76.255	ENSSFOG00015024175	smg5	99	75.865	Scleropages_formosus
ENSTNIG00000010303	smg5	100	80.053	ENSSMAG00000013059	smg5	100	81.041	Scophthalmus_maximus
ENSTNIG00000010303	smg5	100	81.794	ENSSDUG00000007122	smg5	100	81.618	Seriola_dumerili
ENSTNIG00000010303	smg5	100	81.618	ENSSLDG00000011418	smg5	100	81.530	Seriola_lalandi_dorsalis
ENSTNIG00000010303	smg5	90	57.066	ENSSARG00000012484	SMG5	94	68.705	Sorex_araneus
ENSTNIG00000010303	smg5	94	63.518	ENSSPUG00000002260	SMG5	100	64.012	Sphenodon_punctatus
ENSTNIG00000010303	smg5	100	81.954	ENSSPAG00000014266	smg5	100	82.482	Stegastes_partitus
ENSTNIG00000010303	smg5	99	49.903	ENSSSCG00000039308	-	99	50.438	Sus_scrofa
ENSTNIG00000010303	smg5	99	65.049	ENSSSCG00000006490	-	100	64.566	Sus_scrofa
ENSTNIG00000010303	smg5	99	66.311	ENSTGUG00000003748	-	99	66.184	Taeniopygia_guttata
ENSTNIG00000010303	smg5	100	92.164	ENSTRUG00000012580	smg5	100	92.075	Takifugu_rubripes
ENSTNIG00000010303	smg5	57	83.251	ENSTBEG00000002777	SMG5	58	83.251	Tupaia_belangeri
ENSTNIG00000010303	smg5	99	60.583	ENSTTRG00000001401	SMG5	99	61.203	Tursiops_truncatus
ENSTNIG00000010303	smg5	93	73.318	ENSUAMG00000013721	SMG5	99	63.911	Ursus_americanus
ENSTNIG00000010303	smg5	96	69.178	ENSUMAG00000018041	SMG5	95	69.406	Ursus_maritimus
ENSTNIG00000010303	smg5	91	69.458	ENSVPAG00000009446	SMG5	99	57.284	Vicugna_pacos
ENSTNIG00000010303	smg5	99	64.369	ENSVVUG00000005887	SMG5	99	64.694	Vulpes_vulpes
ENSTNIG00000010303	smg5	77	57.602	ENSXETG00000033791	SMG5	100	56.398	Xenopus_tropicalis
ENSTNIG00000010303	smg5	81	89.617	ENSXCOG00000004379	smg5	99	89.617	Xiphophorus_couchianus
ENSTNIG00000010303	smg5	100	79.028	ENSXMAG00000013499	smg5	100	79.962	Xiphophorus_maculatus