EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000010348 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2799 bases
Position: chr3:3948059-3950857
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000013254	RNA_ligase	PF09414.10	5.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000013446	-	2697	-	ENSTNIP00000013254	898 (aa)	-	H3CYB9

Gene Model

Click here to download ENSTNIG00000010348's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010348	lig4	99	65.824	ENSG00000174405	LIG4	100	66.114	Homo_sapiens
ENSTNIG00000010348	lig4	100	84.692	ENSAPOG00000000866	lig4	100	84.471	Acanthochromis_polyacanthus
ENSTNIG00000010348	lig4	99	64.895	ENSAMEG00000019685	LIG4	99	64.673	Ailuropoda_melanoleuca
ENSTNIG00000010348	lig4	99	83.278	ENSACIG00000018309	lig4	99	83.058	Amphilophus_citrinellus
ENSTNIG00000010348	lig4	100	84.802	ENSAOCG00000011768	lig4	100	84.581	Amphiprion_ocellaris
ENSTNIG00000010348	lig4	100	85.022	ENSAPEG00000017815	lig4	100	84.802	Amphiprion_percula
ENSTNIG00000010348	lig4	100	83.736	ENSATEG00000005583	lig4	100	83.516	Anabas_testudineus
ENSTNIG00000010348	lig4	96	66.591	ENSAPLG00000001673	LIG4	99	66.363	Anas_platyrhynchos
ENSTNIG00000010348	lig4	99	67.182	ENSACAG00000014566	LIG4	99	66.961	Anolis_carolinensis
ENSTNIG00000010348	lig4	99	65.714	ENSANAG00000012446	LIG4	99	65.495	Aotus_nancymaae
ENSTNIG00000010348	lig4	99	82.618	ENSACLG00000027051	lig4	99	82.398	Astatotilapia_calliptera
ENSTNIG00000010348	lig4	100	76.772	ENSAMXG00000008192	lig4	95	76.554	Astyanax_mexicanus
ENSTNIG00000010348	lig4	99	65.714	ENSBTAG00000015868	LIG4	99	65.495	Bos_taurus
ENSTNIG00000010348	lig4	99	65.604	ENSCJAG00000014689	LIG4	99	65.385	Callithrix_jacchus
ENSTNIG00000010348	lig4	99	65.714	ENSCAFG00000006031	LIG4	99	65.495	Canis_familiaris
ENSTNIG00000010348	lig4	99	65.714	ENSCAFG00020021230	LIG4	99	65.495	Canis_lupus_dingo
ENSTNIG00000010348	lig4	99	65.385	ENSCHIG00000001019	LIG4	99	65.165	Capra_hircus
ENSTNIG00000010348	lig4	99	65.006	ENSCAPG00000006284	LIG4	99	64.784	Cavia_aperea
ENSTNIG00000010348	lig4	99	64.835	ENSCPOG00000014266	LIG4	99	64.615	Cavia_porcellus
ENSTNIG00000010348	lig4	99	66.044	ENSCCAG00000019971	LIG4	99	65.824	Cebus_capucinus
ENSTNIG00000010348	lig4	99	65.781	ENSCATG00000021075	LIG4	99	65.559	Cercocebus_atys
ENSTNIG00000010348	lig4	99	66.334	ENSCLAG00000003376	LIG4	99	66.113	Chinchilla_lanigera
ENSTNIG00000010348	lig4	99	65.670	ENSCSAG00000000211	LIG4	99	65.449	Chlorocebus_sabaeus
ENSTNIG00000010348	lig4	99	68.479	ENSCPBG00000023291	LIG4	100	67.505	Chrysemys_picta_bellii
ENSTNIG00000010348	lig4	70	47.717	ENSCING00000009536	-	97	46.772	Ciona_intestinalis
ENSTNIG00000010348	lig4	84	45.850	ENSCSAVG00000010336	-	98	45.455	Ciona_savignyi
ENSTNIG00000010348	lig4	99	65.670	ENSCANG00000005805	LIG4	99	65.449	Colobus_angolensis_palliatus
ENSTNIG00000010348	lig4	99	65.044	ENSCGRG00001012072	Lig4	99	64.823	Cricetulus_griseus_chok1gshd
ENSTNIG00000010348	lig4	99	65.044	ENSCGRG00000013417	Lig4	99	64.823	Cricetulus_griseus_crigri
ENSTNIG00000010348	lig4	97	80.834	ENSCSEG00000013905	lig4	96	80.609	Cynoglossus_semilaevis
ENSTNIG00000010348	lig4	100	84.251	ENSCVAG00000007896	lig4	100	84.031	Cyprinodon_variegatus
ENSTNIG00000010348	lig4	100	77.338	ENSDARG00000060620	lig4	100	77.118	Danio_rerio
ENSTNIG00000010348	lig4	99	65.093	ENSDNOG00000000513	LIG4	99	64.874	Dasypus_novemcinctus
ENSTNIG00000010348	lig4	99	65.559	ENSDORG00000027303	Lig4	99	65.338	Dipodomys_ordii
ENSTNIG00000010348	lig4	84	32.456	FBgn0030506	Lig4	85	32.581	Drosophila_melanogaster
ENSTNIG00000010348	lig4	98	63.636	ENSETEG00000015563	LIG4	100	63.525	Echinops_telfairi
ENSTNIG00000010348	lig4	99	44.879	ENSEBUG00000014243	lig4	98	44.715	Eptatretus_burgeri
ENSTNIG00000010348	lig4	99	64.725	ENSEASG00005022073	LIG4	99	64.505	Equus_asinus_asinus
ENSTNIG00000010348	lig4	99	64.615	ENSECAG00000003257	LIG4	99	64.396	Equus_caballus
ENSTNIG00000010348	lig4	100	79.409	ENSELUG00000006787	lig4	100	79.299	Esox_lucius
ENSTNIG00000010348	lig4	99	64.673	ENSFCAG00000031985	LIG4	99	64.452	Felis_catus
ENSTNIG00000010348	lig4	87	68.790	ENSFALG00000004214	LIG4	95	68.535	Ficedula_albicollis
ENSTNIG00000010348	lig4	99	65.165	ENSFDAG00000008973	LIG4	99	64.835	Fukomys_damarensis
ENSTNIG00000010348	lig4	100	84.413	ENSFHEG00000007398	lig4	91	84.193	Fundulus_heteroclitus
ENSTNIG00000010348	lig4	86	76.714	ENSGMOG00000012843	lig4	99	76.455	Gadus_morhua
ENSTNIG00000010348	lig4	100	65.241	ENSGALG00000016854	LIG4	99	65.342	Gallus_gallus
ENSTNIG00000010348	lig4	99	83.352	ENSGAFG00000019779	lig4	96	83.461	Gambusia_affinis
ENSTNIG00000010348	lig4	99	81.678	ENSGACG00000014135	lig4	99	81.457	Gasterosteus_aculeatus
ENSTNIG00000010348	lig4	99	65.714	ENSGGOG00000027771	LIG4	99	65.385	Gorilla_gorilla
ENSTNIG00000010348	lig4	99	82.398	ENSHBUG00000006245	lig4	99	82.178	Haplochromis_burtoni
ENSTNIG00000010348	lig4	99	65.604	ENSHGLG00000000718	LIG4	99	65.385	Heterocephalus_glaber_female
ENSTNIG00000010348	lig4	99	65.604	ENSHGLG00100003265	LIG4	99	65.385	Heterocephalus_glaber_male
ENSTNIG00000010348	lig4	100	79.386	ENSHCOG00000012010	lig4	100	79.167	Hippocampus_comes
ENSTNIG00000010348	lig4	100	76.568	ENSIPUG00000013748	lig4	100	76.348	Ictalurus_punctatus
ENSTNIG00000010348	lig4	99	66.556	ENSSTOG00000024303	LIG4	99	66.334	Ictidomys_tridecemlineatus
ENSTNIG00000010348	lig4	99	65.275	ENSJJAG00000006750	Lig4	99	65.055	Jaculus_jaculus
ENSTNIG00000010348	lig4	100	82.178	ENSKMAG00000001149	lig4	100	81.958	Kryptolebias_marmoratus
ENSTNIG00000010348	lig4	91	85.369	ENSLBEG00000014578	lig4	100	85.127	Labrus_bergylta
ENSTNIG00000010348	lig4	100	66.886	ENSLACG00000003282	LIG4	100	66.667	Latimeria_chalumnae
ENSTNIG00000010348	lig4	100	71.194	ENSLOCG00000008901	lig4	99	70.975	Lepisosteus_oculatus
ENSTNIG00000010348	lig4	99	65.279	ENSLAFG00000031152	LIG4	99	65.060	Loxodonta_africana
ENSTNIG00000010348	lig4	99	65.781	ENSMFAG00000037235	LIG4	99	65.559	Macaca_fascicularis
ENSTNIG00000010348	lig4	99	65.670	ENSMMUG00000008874	LIG4	99	65.449	Macaca_mulatta
ENSTNIG00000010348	lig4	99	65.781	ENSMNEG00000023575	LIG4	99	65.559	Macaca_nemestrina
ENSTNIG00000010348	lig4	99	65.559	ENSMLEG00000026720	LIG4	99	65.338	Mandrillus_leucophaeus
ENSTNIG00000010348	lig4	100	84.396	ENSMAMG00000008472	lig4	99	84.176	Mastacembelus_armatus
ENSTNIG00000010348	lig4	99	82.508	ENSMZEG00005001855	lig4	99	82.288	Maylandia_zebra
ENSTNIG00000010348	lig4	99	65.824	ENSMGAG00000015532	LIG4	99	65.604	Meleagris_gallopavo
ENSTNIG00000010348	lig4	99	64.230	ENSMOCG00000019000	Lig4	99	64.009	Microtus_ochrogaster
ENSTNIG00000010348	lig4	100	84.505	ENSMMOG00000004390	lig4	100	84.286	Mola_mola
ENSTNIG00000010348	lig4	99	65.265	ENSMODG00000025064	LIG4	99	65.044	Monodelphis_domestica
ENSTNIG00000010348	lig4	100	82.656	ENSMALG00000008555	lig4	100	82.437	Monopterus_albus
ENSTNIG00000010348	lig4	99	65.055	MGP_CAROLIEiJ_G0030809	Lig4	99	64.835	Mus_caroli
ENSTNIG00000010348	lig4	99	64.835	ENSMUSG00000049717	Lig4	99	64.615	Mus_musculus
ENSTNIG00000010348	lig4	99	65.275	MGP_PahariEiJ_G0021270	Lig4	99	65.055	Mus_pahari
ENSTNIG00000010348	lig4	99	65.055	MGP_SPRETEiJ_G0031917	Lig4	99	64.835	Mus_spretus
ENSTNIG00000010348	lig4	99	65.165	ENSMPUG00000018675	LIG4	99	64.945	Mustela_putorius_furo
ENSTNIG00000010348	lig4	99	65.165	ENSMLUG00000001267	LIG4	99	64.945	Myotis_lucifugus
ENSTNIG00000010348	lig4	99	65.055	ENSNGAG00000013258	Lig4	99	64.835	Nannospalax_galili
ENSTNIG00000010348	lig4	99	82.508	ENSNBRG00000021252	lig4	99	82.288	Neolamprologus_brichardi
ENSTNIG00000010348	lig4	99	65.275	ENSNLEG00000007888	LIG4	99	65.055	Nomascus_leucogenys
ENSTNIG00000010348	lig4	99	64.341	ENSOPRG00000005765	LIG4	99	64.120	Ochotona_princeps
ENSTNIG00000010348	lig4	99	64.673	ENSODEG00000019683	LIG4	99	64.452	Octodon_degus
ENSTNIG00000010348	lig4	99	82.508	ENSONIG00000011969	lig4	99	82.288	Oreochromis_niloticus
ENSTNIG00000010348	lig4	99	64.725	ENSOCUG00000015734	LIG4	99	64.505	Oryctolagus_cuniculus
ENSTNIG00000010348	lig4	99	81.648	ENSORLG00000004041	lig4	99	81.648	Oryzias_latipes
ENSTNIG00000010348	lig4	99	81.538	ENSORLG00020019607	lig4	99	81.538	Oryzias_latipes_hni
ENSTNIG00000010348	lig4	99	81.648	ENSORLG00015017754	lig4	99	81.648	Oryzias_latipes_hsok
ENSTNIG00000010348	lig4	76	87.007	ENSOMEG00000003459	lig4	99	86.715	Oryzias_melastigma
ENSTNIG00000010348	lig4	99	65.608	ENSOGAG00000032120	LIG4	99	65.389	Otolemur_garnettii
ENSTNIG00000010348	lig4	82	69.086	ENSOARG00000005590	LIG4	98	68.817	Ovis_aries
ENSTNIG00000010348	lig4	99	65.385	ENSPPAG00000032998	LIG4	99	65.165	Pan_paniscus
ENSTNIG00000010348	lig4	99	65.006	ENSPPRG00000017804	LIG4	99	64.784	Panthera_pardus
ENSTNIG00000010348	lig4	99	65.116	ENSPTIG00000010051	LIG4	99	64.895	Panthera_tigris_altaica
ENSTNIG00000010348	lig4	99	65.495	ENSPTRG00000006025	LIG4	99	65.275	Pan_troglodytes
ENSTNIG00000010348	lig4	99	65.891	ENSPANG00000007562	LIG4	99	65.670	Papio_anubis
ENSTNIG00000010348	lig4	99	76.542	ENSPKIG00000011645	lig4	98	76.322	Paramormyrops_kingsleyae
ENSTNIG00000010348	lig4	100	67.763	ENSPSIG00000001504	LIG4	100	67.544	Pelodiscus_sinensis
ENSTNIG00000010348	lig4	98	78.475	ENSPMGG00000013486	lig4	100	77.875	Periophthalmus_magnuspinnatus
ENSTNIG00000010348	lig4	99	64.381	ENSPEMG00000000076	Lig4	99	64.159	Peromyscus_maniculatus_bairdii
ENSTNIG00000010348	lig4	99	65.642	ENSPCIG00000021882	LIG4	99	65.567	Phascolarctos_cinereus
ENSTNIG00000010348	lig4	100	84.101	ENSPFOG00000000797	lig4	100	84.211	Poecilia_formosa
ENSTNIG00000010348	lig4	100	83.991	ENSPLAG00000001196	lig4	100	84.101	Poecilia_latipinna
ENSTNIG00000010348	lig4	100	84.101	ENSPMEG00000021353	lig4	100	84.211	Poecilia_mexicana
ENSTNIG00000010348	lig4	100	83.553	ENSPREG00000007323	lig4	100	83.662	Poecilia_reticulata
ENSTNIG00000010348	lig4	99	65.275	ENSPPYG00000005540	LIG4	99	64.945	Pongo_abelii
ENSTNIG00000010348	lig4	99	64.341	ENSPVAG00000016403	LIG4	99	64.120	Pteropus_vampyrus
ENSTNIG00000010348	lig4	99	82.618	ENSPNYG00000009660	lig4	99	82.398	Pundamilia_nyererei
ENSTNIG00000010348	lig4	99	79.129	ENSPNAG00000028056	lig4	99	78.906	Pygocentrus_nattereri
ENSTNIG00000010348	lig4	99	79.129	ENSPNAG00000028069	LIG4	99	78.906	Pygocentrus_nattereri
ENSTNIG00000010348	lig4	99	64.286	ENSRNOG00000014605	Lig4	99	64.066	Rattus_norvegicus
ENSTNIG00000010348	lig4	99	64.745	ENSRBIG00000039962	LIG4	99	64.523	Rhinopithecus_bieti
ENSTNIG00000010348	lig4	99	65.559	ENSRROG00000006040	LIG4	99	65.338	Rhinopithecus_roxellana
ENSTNIG00000010348	lig4	99	65.495	ENSSBOG00000019029	LIG4	99	65.275	Saimiri_boliviensis_boliviensis
ENSTNIG00000010348	lig4	99	63.806	ENSSHAG00000009525	LIG4	99	63.586	Sarcophilus_harrisii
ENSTNIG00000010348	lig4	100	77.228	ENSSFOG00015012835	lig4	100	77.008	Scleropages_formosus
ENSTNIG00000010348	lig4	100	80.556	ENSSMAG00000011267	lig4	100	80.333	Scophthalmus_maximus
ENSTNIG00000010348	lig4	100	83.151	ENSSDUG00000010343	lig4	100	82.932	Seriola_dumerili
ENSTNIG00000010348	lig4	100	81.619	ENSSLDG00000003239	lig4	100	81.400	Seriola_lalandi_dorsalis
ENSTNIG00000010348	lig4	99	65.567	ENSSARG00000006573	LIG4	99	65.347	Sorex_araneus
ENSTNIG00000010348	lig4	92	68.810	ENSSPUG00000002444	LIG4	100	68.571	Sphenodon_punctatus
ENSTNIG00000010348	lig4	100	83.846	ENSSPAG00000001609	lig4	100	83.626	Stegastes_partitus
ENSTNIG00000010348	lig4	99	64.576	ENSSSCG00000009540	LIG4	99	64.576	Sus_scrofa
ENSTNIG00000010348	lig4	99	65.851	ENSTGUG00000010795	LIG4	99	65.628	Taeniopygia_guttata
ENSTNIG00000010348	lig4	100	88.889	ENSTRUG00000009984	lig4	100	88.669	Takifugu_rubripes
ENSTNIG00000010348	lig4	99	65.385	ENSTBEG00000017741	LIG4	99	65.165	Tupaia_belangeri
ENSTNIG00000010348	lig4	99	65.165	ENSTTRG00000012660	LIG4	99	64.945	Tursiops_truncatus
ENSTNIG00000010348	lig4	99	64.563	ENSUAMG00000003773	LIG4	99	64.341	Ursus_americanus
ENSTNIG00000010348	lig4	100	66.118	ENSXETG00000002654	lig4	100	65.899	Xenopus_tropicalis
ENSTNIG00000010348	lig4	100	83.991	ENSXCOG00000017401	lig4	100	84.101	Xiphophorus_couchianus
ENSTNIG00000010348	lig4	100	83.991	ENSXMAG00000015142	lig4	99	84.101	Xiphophorus_maculatus