EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000010358 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 3415 bases
Position: chr3:4094152-4097566
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000004096	RRM_1	PF00076.22	1e-30	1	2
ENSTNIP00000004096	RRM_1	PF00076.22	1e-30	2	2
ENSTNIP00000013264	RRM_1	PF00076.22	1.2e-30	1	2
ENSTNIP00000013264	RRM_1	PF00076.22	1.2e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000013456	-	1518	-	ENSTNIP00000013264	505 (aa)	-	H3CYC9
ENSTNIT00000004176	-	1434	-	ENSTNIP00000004096	477 (aa)	-	H3C775

Gene Model

Click here to download ENSTNIG00000010358's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010358's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000010358	pspc1	89	52.834	ENSTNIG00000011331	sfpq	80	49.112

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010358	pspc1	84	66.508	ENSG00000121390	PSPC1	82	73.148	Homo_sapiens
ENSTNIG00000010358	pspc1	100	74.330	ENSAPOG00000015946	pspc1	100	74.330	Acanthochromis_polyacanthus
ENSTNIG00000010358	pspc1	90	64.588	ENSAMEG00000017420	PSPC1	88	65.236	Ailuropoda_melanoleuca
ENSTNIG00000010358	pspc1	100	67.823	ENSACIG00000018695	pspc1	100	65.714	Amphilophus_citrinellus
ENSTNIG00000010358	pspc1	100	73.855	ENSAOCG00000005279	pspc1	100	73.855	Amphiprion_ocellaris
ENSTNIG00000010358	pspc1	100	74.472	ENSAPEG00000015927	pspc1	100	74.472	Amphiprion_percula
ENSTNIG00000010358	pspc1	100	64.829	ENSATEG00000004878	pspc1	100	62.500	Anabas_testudineus
ENSTNIG00000010358	pspc1	88	53.509	ENSAPLG00000003643	SFPQ	84	53.452	Anas_platyrhynchos
ENSTNIG00000010358	pspc1	76	62.379	ENSAPLG00000006246	PSPC1	100	64.303	Anas_platyrhynchos
ENSTNIG00000010358	pspc1	91	60.915	ENSACAG00000002093	PSPC1	88	63.539	Anolis_carolinensis
ENSTNIG00000010358	pspc1	87	50.993	ENSACAG00000013307	-	72	48.958	Anolis_carolinensis
ENSTNIG00000010358	pspc1	88	64.920	ENSANAG00000000059	PSPC1	83	70.679	Aotus_nancymaae
ENSTNIG00000010358	pspc1	100	66.214	ENSACLG00000027220	pspc1	100	64.098	Astatotilapia_calliptera
ENSTNIG00000010358	pspc1	97	58.724	ENSAMXG00000036881	pspc1	97	62.308	Astyanax_mexicanus
ENSTNIG00000010358	pspc1	94	60.692	ENSBTAG00000003934	PSPC1	89	64.807	Bos_taurus
ENSTNIG00000010358	pspc1	88	64.920	ENSCJAG00000004554	PSPC1	88	65.236	Callithrix_jacchus
ENSTNIG00000010358	pspc1	84	66.746	ENSCAFG00020002009	PSPC1	83	72.923	Canis_lupus_dingo
ENSTNIG00000010358	pspc1	94	60.692	ENSCHIG00000016708	PSPC1	89	64.807	Capra_hircus
ENSTNIG00000010358	pspc1	75	58.867	ENSTSYG00000032882	PSPC1	88	55.981	Carlito_syrichta
ENSTNIG00000010358	pspc1	86	65.957	ENSCPOG00000000395	PSPC1	85	72.727	Cavia_porcellus
ENSTNIG00000010358	pspc1	88	64.920	ENSCCAG00000033498	PSPC1	88	65.236	Cebus_capucinus
ENSTNIG00000010358	pspc1	84	66.746	ENSCATG00000036434	PSPC1	90	73.148	Cercocebus_atys
ENSTNIG00000010358	pspc1	75	64.611	ENSCLAG00000005241	PSPC1	92	63.942	Chinchilla_lanigera
ENSTNIG00000010358	pspc1	88	61.872	ENSCHOG00000008913	PSPC1	88	62.099	Choloepus_hoffmanni
ENSTNIG00000010358	pspc1	92	61.284	ENSCPBG00000020859	PSPC1	88	64.454	Chrysemys_picta_bellii
ENSTNIG00000010358	pspc1	60	54.035	ENSCSAVG00000003533	-	52	54.909	Ciona_savignyi
ENSTNIG00000010358	pspc1	55	74.809	ENSCANG00000018948	PSPC1	87	74.809	Colobus_angolensis_palliatus
ENSTNIG00000010358	pspc1	89	64.560	ENSCGRG00001018368	Pspc1	88	64.592	Cricetulus_griseus_chok1gshd
ENSTNIG00000010358	pspc1	89	64.560	ENSCGRG00000011724	Pspc1	88	64.592	Cricetulus_griseus_crigri
ENSTNIG00000010358	pspc1	100	69.439	ENSCVAG00000007679	-	100	69.439	Cyprinodon_variegatus
ENSTNIG00000010358	pspc1	100	59.434	ENSDARG00000006621	pspc1	100	62.408	Danio_rerio
ENSTNIG00000010358	pspc1	88	64.026	ENSDNOG00000011078	PSPC1	89	64.957	Dasypus_novemcinctus
ENSTNIG00000010358	pspc1	91	60.663	ENSDORG00000016050	Pspc1	88	62.876	Dipodomys_ordii
ENSTNIG00000010358	pspc1	51	73.267	ENSETEG00000000502	-	75	73.267	Echinops_telfairi
ENSTNIG00000010358	pspc1	90	52.371	ENSEBUG00000003964	-	76	54.739	Eptatretus_burgeri
ENSTNIG00000010358	pspc1	68	40.974	ENSEBUG00000010133	pspc1	76	43.493	Eptatretus_burgeri
ENSTNIG00000010358	pspc1	88	62.796	ENSEASG00005000119	PSPC1	84	72.477	Equus_asinus_asinus
ENSTNIG00000010358	pspc1	88	62.796	ENSECAG00000017286	PSPC1	84	72.477	Equus_caballus
ENSTNIG00000010358	pspc1	55	62.692	ENSEEUG00000011288	-	51	62.692	Erinaceus_europaeus
ENSTNIG00000010358	pspc1	100	62.011	ENSELUG00000003746	pspc1	100	62.197	Esox_lucius
ENSTNIG00000010358	pspc1	84	66.746	ENSFCAG00000027841	PSPC1	85	72.508	Felis_catus
ENSTNIG00000010358	pspc1	88	62.661	ENSFALG00000008750	PSPC1	88	64.882	Ficedula_albicollis
ENSTNIG00000010358	pspc1	91	63.778	ENSFDAG00000002617	PSPC1	92	65.042	Fukomys_damarensis
ENSTNIG00000010358	pspc1	100	57.476	ENSGMOG00000015074	pspc1	100	57.476	Gadus_morhua
ENSTNIG00000010358	pspc1	87	63.734	ENSGALG00000017142	PSPC1	88	64.882	Gallus_gallus
ENSTNIG00000010358	pspc1	78	74.271	ENSGAFG00000006327	pspc1	81	72.449	Gambusia_affinis
ENSTNIG00000010358	pspc1	100	72.745	ENSGACG00000014901	pspc1	99	72.941	Gasterosteus_aculeatus
ENSTNIG00000010358	pspc1	86	54.139	ENSGAGG00000017325	-	66	53.986	Gopherus_agassizii
ENSTNIG00000010358	pspc1	92	61.284	ENSGAGG00000019164	PSPC1	88	64.454	Gopherus_agassizii
ENSTNIG00000010358	pspc1	84	66.508	ENSGGOG00000003414	PSPC1	82	73.148	Gorilla_gorilla
ENSTNIG00000010358	pspc1	100	75.000	ENSHBUG00000001139	pspc1	100	75.000	Haplochromis_burtoni
ENSTNIG00000010358	pspc1	90	64.626	ENSHGLG00000018811	PSPC1	89	65.236	Heterocephalus_glaber_female
ENSTNIG00000010358	pspc1	64	69.481	ENSHGLG00100007962	PSPC1	89	72.260	Heterocephalus_glaber_male
ENSTNIG00000010358	pspc1	87	72.771	ENSHCOG00000013251	pspc1	97	69.932	Hippocampus_comes
ENSTNIG00000010358	pspc1	100	60.444	ENSIPUG00000013192	pspc1	100	62.147	Ictalurus_punctatus
ENSTNIG00000010358	pspc1	88	62.796	ENSSTOG00000026833	PSPC1	84	72.727	Ictidomys_tridecemlineatus
ENSTNIG00000010358	pspc1	85	65.728	ENSJJAG00000018334	Pspc1	88	64.807	Jaculus_jaculus
ENSTNIG00000010358	pspc1	100	57.864	ENSKMAG00000013525	-	98	72.131	Kryptolebias_marmoratus
ENSTNIG00000010358	pspc1	98	71.591	ENSLBEG00000004474	pspc1	99	71.347	Labrus_bergylta
ENSTNIG00000010358	pspc1	85	65.558	ENSLACG00000010762	PSPC1	88	64.882	Latimeria_chalumnae
ENSTNIG00000010358	pspc1	91	67.627	ENSLOCG00000010832	pspc1	91	68.737	Lepisosteus_oculatus
ENSTNIG00000010358	pspc1	88	65.000	ENSLAFG00000010968	PSPC1	88	65.236	Loxodonta_africana
ENSTNIG00000010358	pspc1	84	66.746	ENSMFAG00000032728	PSPC1	91	72.923	Macaca_fascicularis
ENSTNIG00000010358	pspc1	84	66.746	ENSMMUG00000020262	PSPC1	88	73.148	Macaca_mulatta
ENSTNIG00000010358	pspc1	84	66.746	ENSMNEG00000027401	PSPC1	88	65.451	Macaca_nemestrina
ENSTNIG00000010358	pspc1	72	66.209	ENSMLEG00000039043	PSPC1	94	65.347	Mandrillus_leucophaeus
ENSTNIG00000010358	pspc1	98	72.692	ENSMAMG00000004333	pspc1	98	71.923	Mastacembelus_armatus
ENSTNIG00000010358	pspc1	100	66.214	ENSMZEG00005005726	pspc1	100	64.098	Maylandia_zebra
ENSTNIG00000010358	pspc1	76	62.927	ENSMGAG00000015134	PSPC1	100	64.234	Meleagris_gallopavo
ENSTNIG00000010358	pspc1	86	60.706	ENSMAUG00000021067	Pspc1	86	62.283	Mesocricetus_auratus
ENSTNIG00000010358	pspc1	87	65.021	ENSMICG00000013970	PSPC1	84	72.727	Microcebus_murinus
ENSTNIG00000010358	pspc1	84	66.271	ENSMOCG00000006060	Pspc1	88	64.807	Microtus_ochrogaster
ENSTNIG00000010358	pspc1	83	89.286	ENSMMOG00000004352	pspc1	71	89.286	Mola_mola
ENSTNIG00000010358	pspc1	90	64.399	ENSMODG00000008029	PSPC1	68	66.824	Monodelphis_domestica
ENSTNIG00000010358	pspc1	100	72.798	ENSMALG00000008914	pspc1	100	72.798	Monopterus_albus
ENSTNIG00000010358	pspc1	84	66.114	MGP_CAROLIEiJ_G0019341	Pspc1	86	67.327	Mus_caroli
ENSTNIG00000010358	pspc1	84	66.114	ENSMUSG00000021938	Pspc1	86	67.327	Mus_musculus
ENSTNIG00000010358	pspc1	88	62.232	MGP_PahariEiJ_G0030359	Pspc1	86	67.327	Mus_pahari
ENSTNIG00000010358	pspc1	84	66.114	MGP_SPRETEiJ_G0020232	Pspc1	86	67.327	Mus_spretus
ENSTNIG00000010358	pspc1	84	66.746	ENSMPUG00000013347	PSPC1	88	65.236	Mustela_putorius_furo
ENSTNIG00000010358	pspc1	88	62.393	ENSMLUG00000017663	PSPC1	89	64.606	Myotis_lucifugus
ENSTNIG00000010358	pspc1	87	64.516	ENSNGAG00000011271	Pspc1	88	65.236	Nannospalax_galili
ENSTNIG00000010358	pspc1	79	70.370	ENSNBRG00000014059	pspc1	92	66.749	Neolamprologus_brichardi
ENSTNIG00000010358	pspc1	84	66.508	ENSNLEG00000001294	PSPC1	88	65.236	Nomascus_leucogenys
ENSTNIG00000010358	pspc1	87	49.161	ENSMEUG00000000476	PSPC1	88	49.571	Notamacropus_eugenii
ENSTNIG00000010358	pspc1	88	54.158	ENSODEG00000007817	-	88	56.624	Octodon_degus
ENSTNIG00000010358	pspc1	88	57.569	ENSODEG00000019012	-	88	59.957	Octodon_degus
ENSTNIG00000010358	pspc1	100	75.822	ENSONIG00000012010	pspc1	99	75.822	Oreochromis_niloticus
ENSTNIG00000010358	pspc1	71	65.738	ENSOANG00000009017	-	100	64.604	Ornithorhynchus_anatinus
ENSTNIG00000010358	pspc1	89	50.229	ENSOANG00000011381	-	92	51.178	Ornithorhynchus_anatinus
ENSTNIG00000010358	pspc1	84	66.587	ENSOCUG00000006153	PSPC1	88	65.227	Oryctolagus_cuniculus
ENSTNIG00000010358	pspc1	100	70.955	ENSORLG00000004232	-	100	68.350	Oryzias_latipes
ENSTNIG00000010358	pspc1	100	70.760	ENSORLG00020000578	PSPC1	100	67.379	Oryzias_latipes_hni
ENSTNIG00000010358	pspc1	100	71.150	ENSORLG00015017480	pspc1	100	68.544	Oryzias_latipes_hsok
ENSTNIG00000010358	pspc1	88	65.148	ENSOGAG00000012643	PSPC1	88	65.236	Otolemur_garnettii
ENSTNIG00000010358	pspc1	88	62.419	ENSOARG00000014163	PSPC1	95	64.440	Ovis_aries
ENSTNIG00000010358	pspc1	84	58.907	ENSPPAG00000009836	PSPC1	92	73.148	Pan_paniscus
ENSTNIG00000010358	pspc1	84	66.746	ENSPPRG00000008833	PSPC1	88	65.236	Panthera_pardus
ENSTNIG00000010358	pspc1	72	65.934	ENSPTIG00000016917	PSPC1	84	64.851	Panthera_tigris_altaica
ENSTNIG00000010358	pspc1	84	66.508	ENSPTRG00000005677	PSPC1	82	73.148	Pan_troglodytes
ENSTNIG00000010358	pspc1	84	66.746	ENSPANG00000001992	PSPC1	91	72.508	Papio_anubis
ENSTNIG00000010358	pspc1	98	60.117	ENSPKIG00000003578	pspc1	89	67.312	Paramormyrops_kingsleyae
ENSTNIG00000010358	pspc1	91	61.378	ENSPSIG00000005168	PSPC1	88	64.240	Pelodiscus_sinensis
ENSTNIG00000010358	pspc1	71	69.208	ENSPMGG00000015135	pspc1	98	66.854	Periophthalmus_magnuspinnatus
ENSTNIG00000010358	pspc1	84	66.271	ENSPEMG00000015214	Pspc1	88	64.807	Peromyscus_maniculatus_bairdii
ENSTNIG00000010358	pspc1	56	40.590	ENSPMAG00000004618	pspc1	88	40.690	Petromyzon_marinus
ENSTNIG00000010358	pspc1	90	64.399	ENSPCIG00000017680	PSPC1	88	65.236	Phascolarctos_cinereus
ENSTNIG00000010358	pspc1	99	72.407	ENSPFOG00000003362	pspc1	99	72.407	Poecilia_formosa
ENSTNIG00000010358	pspc1	100	71.954	ENSPLAG00000011540	pspc1	100	71.954	Poecilia_latipinna
ENSTNIG00000010358	pspc1	90	47.122	ENSPLAG00000004407	-	53	52.792	Poecilia_latipinna
ENSTNIG00000010358	pspc1	100	71.567	ENSPMEG00000008322	pspc1	100	71.567	Poecilia_mexicana
ENSTNIG00000010358	pspc1	90	47.974	ENSPMEG00000001025	-	52	53.299	Poecilia_mexicana
ENSTNIG00000010358	pspc1	100	72.147	ENSPREG00000007786	pspc1	100	72.147	Poecilia_reticulata
ENSTNIG00000010358	pspc1	86	65.957	ENSPPYG00000005186	PSPC1	95	61.252	Pongo_abelii
ENSTNIG00000010358	pspc1	91	60.537	ENSPCOG00000014364	PSPC1	88	63.274	Propithecus_coquereli
ENSTNIG00000010358	pspc1	88	63.812	ENSPVAG00000005036	PSPC1	89	64.530	Pteropus_vampyrus
ENSTNIG00000010358	pspc1	100	66.602	ENSPNYG00000008893	pspc1	100	64.474	Pundamilia_nyererei
ENSTNIG00000010358	pspc1	93	61.111	ENSPNAG00000016511	pspc1	100	61.914	Pygocentrus_nattereri
ENSTNIG00000010358	pspc1	84	66.271	ENSRNOG00000020782	Pspc1	86	67.494	Rattus_norvegicus
ENSTNIG00000010358	pspc1	90	64.302	ENSRBIG00000036057	PSPC1	94	71.726	Rhinopithecus_bieti
ENSTNIG00000010358	pspc1	89	64.509	ENSRROG00000036334	PSPC1	93	66.400	Rhinopithecus_roxellana
ENSTNIG00000010358	pspc1	77	55.012	ENSSBOG00000028172	PSPC1	88	73.507	Saimiri_boliviensis_boliviensis
ENSTNIG00000010358	pspc1	90	59.508	ENSSHAG00000004696	PSPC1	88	60.381	Sarcophilus_harrisii
ENSTNIG00000010358	pspc1	84	70.433	ENSSFOG00015001395	pspc1	99	68.017	Scleropages_formosus
ENSTNIG00000010358	pspc1	100	71.456	ENSSMAG00000001761	pspc1	100	71.456	Scophthalmus_maximus
ENSTNIG00000010358	pspc1	100	71.296	ENSSDUG00000010651	pspc1	100	72.037	Seriola_dumerili
ENSTNIG00000010358	pspc1	100	67.520	ENSSLDG00000004284	pspc1	100	64.762	Seriola_lalandi_dorsalis
ENSTNIG00000010358	pspc1	84	60.808	ENSSARG00000000888	PSPC1	89	59.483	Sorex_araneus
ENSTNIG00000010358	pspc1	90	51.943	ENSSPUG00000008550	PSPC1	88	55.983	Sphenodon_punctatus
ENSTNIG00000010358	pspc1	86	48.770	ENSSPUG00000001136	-	64	49.091	Sphenodon_punctatus
ENSTNIG00000010358	pspc1	100	73.962	ENSSPAG00000001921	pspc1	100	73.962	Stegastes_partitus
ENSTNIG00000010358	pspc1	84	66.508	ENSSSCG00000009569	PSPC1	85	72.424	Sus_scrofa
ENSTNIG00000010358	pspc1	88	62.661	ENSTGUG00000011295	PSPC1	99	64.882	Taeniopygia_guttata
ENSTNIG00000010358	pspc1	100	84.496	ENSTRUG00000011335	pspc1	100	82.946	Takifugu_rubripes
ENSTNIG00000010358	pspc1	88	55.799	ENSTBEG00000002361	PSPC1	88	56.236	Tupaia_belangeri
ENSTNIG00000010358	pspc1	84	66.508	ENSTTRG00000003343	PSPC1	90	64.831	Tursiops_truncatus
ENSTNIG00000010358	pspc1	66	68.770	ENSUAMG00000012309	PSPC1	82	72.727	Ursus_americanus
ENSTNIG00000010358	pspc1	90	64.080	ENSUMAG00000013993	PSPC1	93	72.205	Ursus_maritimus
ENSTNIG00000010358	pspc1	75	62.035	ENSVPAG00000010029	PSPC1	100	65.099	Vicugna_pacos
ENSTNIG00000010358	pspc1	84	66.746	ENSVVUG00000006414	PSPC1	84	73.148	Vulpes_vulpes
ENSTNIG00000010358	pspc1	79	74.406	ENSXCOG00000017438	pspc1	93	72.959	Xiphophorus_couchianus
ENSTNIG00000010358	pspc1	79	74.406	ENSXMAG00000007929	pspc1	93	72.959	Xiphophorus_maculatus