EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000010878 (Gene tree)
Gene ID: -
Gene Symbol: csde1
Alias: fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name: cold shock domain containing E1%2C RNA-binding
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 3815 bases
Position: chrUn_random:2341432-2345246
Accession: ZDB-GENE-030131-8623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000000800	CSD	PF00313.22	2.1e-36	1	2
ENSTNIP00000000800	CSD	PF00313.22	2.1e-36	2	2
ENSTNIP00000013808	CSD	PF00313.22	2.1e-36	1	2
ENSTNIP00000013808	CSD	PF00313.22	2.1e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000000825	-	1209	-	ENSTNIP00000000800	261 (aa)	-	H3CZX2
ENSTNIT00000014003	-	1350	-	ENSTNIP00000013808	261 (aa)	-	H3CZX2

Gene Model

Click here to download ENSTNIG00000010878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000010878's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000010878	csde1	98	83.721	ENSG00000009307	CSDE1	100	81.915	Homo_sapiens
ENSTNIG00000010878	csde1	100	88.571	ENSAPOG00000015538	csde1	93	88.571	Acanthochromis_polyacanthus
ENSTNIG00000010878	csde1	100	72.414	ENSAMEG00000017129	CSDE1	87	72.414	Ailuropoda_melanoleuca
ENSTNIG00000010878	csde1	91	100.000	ENSACIG00000015175	csde1	99	100.000	Amphilophus_citrinellus
ENSTNIG00000010878	csde1	100	89.286	ENSAOCG00000011510	csde1	93	85.824	Amphiprion_ocellaris
ENSTNIG00000010878	csde1	100	95.402	ENSAPEG00000007194	csde1	93	88.929	Amphiprion_percula
ENSTNIG00000010878	csde1	100	85.057	ENSATEG00000003864	csde1	93	85.057	Anabas_testudineus
ENSTNIG00000010878	csde1	100	75.479	ENSAPLG00000008797	CSDE1	93	75.479	Anas_platyrhynchos
ENSTNIG00000010878	csde1	100	82.890	ENSACAG00000003120	CSDE1	93	82.890	Anolis_carolinensis
ENSTNIG00000010878	csde1	74	77.143	ENSANAG00000028396	-	68	77.143	Aotus_nancymaae
ENSTNIG00000010878	csde1	98	83.721	ENSANAG00000024665	CSDE1	87	83.721	Aotus_nancymaae
ENSTNIG00000010878	csde1	100	95.019	ENSACLG00000013296	csde1	93	95.019	Astatotilapia_calliptera
ENSTNIG00000010878	csde1	100	81.226	ENSAMXG00000007436	csde1	92	81.226	Astyanax_mexicanus
ENSTNIG00000010878	csde1	100	80.989	ENSBTAG00000000678	CSDE1	88	80.989	Bos_taurus
ENSTNIG00000010878	csde1	100	81.369	ENSCJAG00000012565	CSDE1	88	81.369	Callithrix_jacchus
ENSTNIG00000010878	csde1	100	73.180	ENSCAFG00000009618	CSDE1	89	73.180	Canis_familiaris
ENSTNIG00000010878	csde1	100	73.180	ENSCAFG00020000481	CSDE1	93	73.180	Canis_lupus_dingo
ENSTNIG00000010878	csde1	100	80.989	ENSCHIG00000017250	CSDE1	88	80.989	Capra_hircus
ENSTNIG00000010878	csde1	100	82.129	ENSTSYG00000003747	CSDE1	93	82.129	Carlito_syrichta
ENSTNIG00000010878	csde1	100	76.687	ENSCAPG00000015128	CSDE1	71	76.687	Cavia_aperea
ENSTNIG00000010878	csde1	100	69.732	ENSCPOG00000040388	CSDE1	93	69.732	Cavia_porcellus
ENSTNIG00000010878	csde1	98	83.721	ENSCCAG00000036794	CSDE1	93	81.369	Cebus_capucinus
ENSTNIG00000010878	csde1	100	81.369	ENSCATG00000036962	CSDE1	88	81.369	Cercocebus_atys
ENSTNIG00000010878	csde1	100	81.369	ENSCLAG00000006618	CSDE1	93	81.369	Chinchilla_lanigera
ENSTNIG00000010878	csde1	100	81.369	ENSCSAG00000001658	CSDE1	88	81.369	Chlorocebus_sabaeus
ENSTNIG00000010878	csde1	100	89.583	ENSCHOG00000000918	CSDE1	57	89.583	Choloepus_hoffmanni
ENSTNIG00000010878	csde1	100	82.890	ENSCPBG00000016547	CSDE1	93	82.890	Chrysemys_picta_bellii
ENSTNIG00000010878	csde1	95	49.802	ENSCING00000014465	-	90	49.802	Ciona_intestinalis
ENSTNIG00000010878	csde1	93	48.263	ENSCSAVG00000008100	-	70	48.263	Ciona_savignyi
ENSTNIG00000010878	csde1	98	81.395	ENSCANG00000031069	-	93	81.395	Colobus_angolensis_palliatus
ENSTNIG00000010878	csde1	100	81.369	ENSCANG00000035096	CSDE1	88	81.369	Colobus_angolensis_palliatus
ENSTNIG00000010878	csde1	98	63.672	ENSCGRG00001014011	-	69	63.672	Cricetulus_griseus_chok1gshd
ENSTNIG00000010878	csde1	100	80.608	ENSCGRG00001016833	-	93	80.608	Cricetulus_griseus_chok1gshd
ENSTNIG00000010878	csde1	86	33.188	ENSCGRG00000002225	-	87	33.188	Cricetulus_griseus_crigri
ENSTNIG00000010878	csde1	99	64.093	ENSCGRG00000005831	-	64	64.093	Cricetulus_griseus_crigri
ENSTNIG00000010878	csde1	100	86.786	ENSCSEG00000002620	csde1	89	86.786	Cynoglossus_semilaevis
ENSTNIG00000010878	csde1	100	92.720	ENSCVAG00000001344	csde1	93	92.720	Cyprinodon_variegatus
ENSTNIG00000010878	csde1	100	88.123	ENSDARG00000074758	csde1	99	95.082	Danio_rerio
ENSTNIG00000010878	csde1	100	73.180	ENSDNOG00000010287	-	86	73.180	Dasypus_novemcinctus
ENSTNIG00000010878	csde1	98	82.946	ENSDORG00000011609	Csde1	91	82.946	Dipodomys_ordii
ENSTNIG00000010878	csde1	97	56.410	FBgn0263352	Unr	74	54.694	Drosophila_melanogaster
ENSTNIG00000010878	csde1	99	61.154	ENSETEG00000013678	-	72	61.154	Echinops_telfairi
ENSTNIG00000010878	csde1	100	51.341	ENSETEG00000002491	-	63	51.341	Echinops_telfairi
ENSTNIG00000010878	csde1	100	69.732	ENSETEG00000006280	-	86	69.732	Echinops_telfairi
ENSTNIG00000010878	csde1	100	56.180	ENSEBUG00000008647	csde1	93	56.180	Eptatretus_burgeri
ENSTNIG00000010878	csde1	100	81.749	ENSEASG00005006284	CSDE1	93	81.749	Equus_asinus_asinus
ENSTNIG00000010878	csde1	100	81.749	ENSECAG00000020885	CSDE1	93	81.749	Equus_caballus
ENSTNIG00000010878	csde1	100	85.357	ENSELUG00000015507	csde1	89	85.357	Esox_lucius
ENSTNIG00000010878	csde1	100	81.369	ENSFCAG00000029266	CSDE1	88	81.369	Felis_catus
ENSTNIG00000010878	csde1	100	82.510	ENSFALG00000003407	CSDE1	93	82.510	Ficedula_albicollis
ENSTNIG00000010878	csde1	98	83.721	ENSFDAG00000007882	CSDE1	91	83.721	Fukomys_damarensis
ENSTNIG00000010878	csde1	100	92.720	ENSFHEG00000010799	csde1	87	92.720	Fundulus_heteroclitus
ENSTNIG00000010878	csde1	100	90.805	ENSGMOG00000012731	csde1	93	90.805	Gadus_morhua
ENSTNIG00000010878	csde1	100	83.270	ENSGALG00000002139	CSDE1	93	83.270	Gallus_gallus
ENSTNIG00000010878	csde1	100	83.525	ENSGAFG00000005241	csde1	80	83.525	Gambusia_affinis
ENSTNIG00000010878	csde1	100	94.253	ENSGACG00000004544	csde1	93	94.253	Gasterosteus_aculeatus
ENSTNIG00000010878	csde1	100	82.890	ENSGAGG00000017685	CSDE1	93	82.890	Gopherus_agassizii
ENSTNIG00000010878	csde1	98	83.721	ENSGGOG00000002164	CSDE1	87	83.721	Gorilla_gorilla
ENSTNIG00000010878	csde1	100	95.019	ENSHBUG00000020315	csde1	88	95.019	Haplochromis_burtoni
ENSTNIG00000010878	csde1	100	80.989	ENSHGLG00000009620	-	73	80.989	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	82	30.702	ENSHGLG00000010039	-	86	30.702	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	91	81.746	ENSHGLG00000008555	-	94	81.746	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	100	73.563	ENSHGLG00000019549	-	70	73.563	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	100	77.186	ENSHGLG00000000650	-	66	77.186	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	100	65.517	ENSHGLG00000007471	-	69	65.517	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	100	67.050	ENSHGLG00000003829	-	89	67.050	Heterocephalus_glaber_female
ENSTNIG00000010878	csde1	99	59.690	ENSHGLG00100004195	-	96	59.690	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	100	65.517	ENSHGLG00100007287	-	92	65.517	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	86	31.739	ENSHGLG00100004833	-	55	31.739	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	100	80.989	ENSHGLG00100019438	-	93	80.989	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	91	84.615	ENSHGLG00100001846	-	53	84.615	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	100	58.621	ENSHGLG00100012072	-	91	64.474	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	100	77.308	ENSHGLG00100002245	-	68	77.308	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	82	30.263	ENSHGLG00100006910	-	86	30.263	Heterocephalus_glaber_male
ENSTNIG00000010878	csde1	100	91.188	ENSHCOG00000004158	csde1	88	91.188	Hippocampus_comes
ENSTNIG00000010878	csde1	100	77.011	ENSIPUG00000000355	csde1	93	77.011	Ictalurus_punctatus
ENSTNIG00000010878	csde1	100	77.992	ENSSTOG00000032722	-	97	77.992	Ictidomys_tridecemlineatus
ENSTNIG00000010878	csde1	100	66.171	ENSSTOG00000030994	-	71	66.171	Ictidomys_tridecemlineatus
ENSTNIG00000010878	csde1	98	83.721	ENSJJAG00000019571	Csde1	91	83.721	Jaculus_jaculus
ENSTNIG00000010878	csde1	100	91.188	ENSKMAG00000005685	csde1	93	91.188	Kryptolebias_marmoratus
ENSTNIG00000010878	csde1	100	87.500	ENSLBEG00000014770	csde1	93	83.908	Labrus_bergylta
ENSTNIG00000010878	csde1	100	82.197	ENSLACG00000018452	CSDE1	68	82.197	Latimeria_chalumnae
ENSTNIG00000010878	csde1	100	88.123	ENSLOCG00000010413	csde1	87	88.123	Lepisosteus_oculatus
ENSTNIG00000010878	csde1	100	73.563	ENSLAFG00000007150	CSDE1	89	73.563	Loxodonta_africana
ENSTNIG00000010878	csde1	100	81.369	ENSMFAG00000003674	CSDE1	88	81.369	Macaca_fascicularis
ENSTNIG00000010878	csde1	100	81.369	ENSMMUG00000001974	CSDE1	99	73.180	Macaca_mulatta
ENSTNIG00000010878	csde1	100	81.369	ENSMNEG00000045247	CSDE1	88	81.369	Macaca_nemestrina
ENSTNIG00000010878	csde1	100	81.369	ENSMLEG00000038673	CSDE1	88	81.369	Mandrillus_leucophaeus
ENSTNIG00000010878	csde1	100	88.571	ENSMAMG00000008821	csde1	93	84.674	Mastacembelus_armatus
ENSTNIG00000010878	csde1	100	95.019	ENSMZEG00005021675	csde1	88	95.019	Maylandia_zebra
ENSTNIG00000010878	csde1	100	83.650	ENSMGAG00000016381	CSDE1	93	83.650	Meleagris_gallopavo
ENSTNIG00000010878	csde1	98	82.946	ENSMAUG00000014031	Csde1	91	82.946	Mesocricetus_auratus
ENSTNIG00000010878	csde1	100	81.749	ENSMICG00000002050	CSDE1	88	81.749	Microcebus_murinus
ENSTNIG00000010878	csde1	100	80.608	ENSMOCG00000018960	Csde1	93	80.608	Microtus_ochrogaster
ENSTNIG00000010878	csde1	100	83.908	ENSMMOG00000015075	csde1	93	83.908	Mola_mola
ENSTNIG00000010878	csde1	100	83.270	ENSMODG00000004685	CSDE1	93	83.270	Monodelphis_domestica
ENSTNIG00000010878	csde1	100	84.291	ENSMALG00000007132	csde1	93	84.291	Monopterus_albus
ENSTNIG00000010878	csde1	100	80.608	MGP_CAROLIEiJ_G0025444	Csde1	84	92.857	Mus_caroli
ENSTNIG00000010878	csde1	98	82.946	ENSMUSG00000068823	Csde1	83	92.857	Mus_musculus
ENSTNIG00000010878	csde1	100	80.608	MGP_PahariEiJ_G0026888	Csde1	84	92.857	Mus_pahari
ENSTNIG00000010878	csde1	100	80.608	MGP_SPRETEiJ_G0026394	Csde1	84	92.857	Mus_spretus
ENSTNIG00000010878	csde1	100	81.369	ENSMPUG00000005753	CSDE1	95	81.369	Mustela_putorius_furo
ENSTNIG00000010878	csde1	100	72.797	ENSMLUG00000005681	CSDE1	87	72.797	Myotis_lucifugus
ENSTNIG00000010878	csde1	98	82.946	ENSNGAG00000021929	Csde1	91	82.946	Nannospalax_galili
ENSTNIG00000010878	csde1	100	85.057	ENSNBRG00000020808	csde1	93	85.057	Neolamprologus_brichardi
ENSTNIG00000010878	csde1	98	83.721	ENSNLEG00000004842	CSDE1	87	83.721	Nomascus_leucogenys
ENSTNIG00000010878	csde1	100	89.583	ENSMEUG00000002677	CSDE1	90	89.583	Notamacropus_eugenii
ENSTNIG00000010878	csde1	100	80.583	ENSOPRG00000005002	CSDE1	69	80.583	Ochotona_princeps
ENSTNIG00000010878	csde1	98	83.721	ENSODEG00000007383	-	91	83.721	Octodon_degus
ENSTNIG00000010878	csde1	100	88.571	ENSONIG00000009309	csde1	93	88.571	Oreochromis_niloticus
ENSTNIG00000010878	csde1	100	83.270	ENSOANG00000003346	-	73	83.270	Ornithorhynchus_anatinus
ENSTNIG00000010878	csde1	100	80.989	ENSOCUG00000016438	CSDE1	88	80.989	Oryctolagus_cuniculus
ENSTNIG00000010878	csde1	100	84.286	ENSORLG00000000707	csde1	93	80.843	Oryzias_latipes
ENSTNIG00000010878	csde1	100	90.421	ENSORLG00020005148	csde1	69	90.421	Oryzias_latipes_hni
ENSTNIG00000010878	csde1	100	90.421	ENSORLG00015019415	csde1	93	80.843	Oryzias_latipes_hsok
ENSTNIG00000010878	csde1	100	90.038	ENSOMEG00000015656	csde1	93	80.843	Oryzias_melastigma
ENSTNIG00000010878	csde1	100	73.563	ENSOGAG00000012127	CSDE1	87	73.563	Otolemur_garnettii
ENSTNIG00000010878	csde1	100	72.797	ENSOARG00000020034	CSDE1	87	72.797	Ovis_aries
ENSTNIG00000010878	csde1	98	83.721	ENSPPAG00000025861	CSDE1	87	83.721	Pan_paniscus
ENSTNIG00000010878	csde1	100	81.369	ENSPPRG00000006747	CSDE1	88	81.369	Panthera_pardus
ENSTNIG00000010878	csde1	100	81.369	ENSPTIG00000015468	CSDE1	93	81.369	Panthera_tigris_altaica
ENSTNIG00000010878	csde1	98	83.721	ENSPTRG00000033721	CSDE1	93	81.369	Pan_troglodytes
ENSTNIG00000010878	csde1	100	81.369	ENSPANG00000018873	CSDE1	88	81.369	Papio_anubis
ENSTNIG00000010878	csde1	100	76.245	ENSPKIG00000009459	csde1	93	76.245	Paramormyrops_kingsleyae
ENSTNIG00000010878	csde1	100	83.270	ENSPSIG00000003823	CSDE1	91	83.270	Pelodiscus_sinensis
ENSTNIG00000010878	csde1	100	83.525	ENSPMGG00000000772	csde1	71	83.525	Periophthalmus_magnuspinnatus
ENSTNIG00000010878	csde1	100	80.989	ENSPEMG00000020357	-	93	80.989	Peromyscus_maniculatus_bairdii
ENSTNIG00000010878	csde1	100	83.270	ENSPCIG00000022587	CSDE1	93	83.270	Phascolarctos_cinereus
ENSTNIG00000010878	csde1	91	97.059	ENSPFOG00000012664	csde1	91	97.059	Poecilia_formosa
ENSTNIG00000010878	csde1	91	93.204	ENSPLAG00000017680	csde1	87	93.204	Poecilia_latipinna
ENSTNIG00000010878	csde1	91	93.204	ENSPMEG00000005094	csde1	89	93.204	Poecilia_mexicana
ENSTNIG00000010878	csde1	100	92.720	ENSPREG00000011631	csde1	88	92.720	Poecilia_reticulata
ENSTNIG00000010878	csde1	100	80.989	ENSPPYG00000000996	CSDE1	93	80.989	Pongo_abelii
ENSTNIG00000010878	csde1	100	89.583	ENSPCAG00000014368	CSDE1	83	89.583	Procavia_capensis
ENSTNIG00000010878	csde1	100	81.369	ENSPCOG00000017893	CSDE1	93	81.369	Propithecus_coquereli
ENSTNIG00000010878	csde1	98	73.485	ENSPCOG00000008223	-	88	73.485	Propithecus_coquereli
ENSTNIG00000010878	csde1	100	72.414	ENSPVAG00000008225	CSDE1	87	72.414	Pteropus_vampyrus
ENSTNIG00000010878	csde1	100	95.019	ENSPNYG00000013745	csde1	87	95.019	Pundamilia_nyererei
ENSTNIG00000010878	csde1	100	91.954	ENSPNAG00000001958	csde1	88	91.954	Pygocentrus_nattereri
ENSTNIG00000010878	csde1	100	80.228	ENSRNOG00000061058	Csde1	93	80.228	Rattus_norvegicus
ENSTNIG00000010878	csde1	98	82.031	ENSRBIG00000038088	-	91	82.031	Rhinopithecus_bieti
ENSTNIG00000010878	csde1	100	81.369	ENSRBIG00000038966	-	87	81.369	Rhinopithecus_bieti
ENSTNIG00000010878	csde1	100	81.369	ENSRROG00000043101	CSDE1	88	81.369	Rhinopithecus_roxellana
ENSTNIG00000010878	csde1	100	81.369	ENSSBOG00000035592	CSDE1	88	81.369	Saimiri_boliviensis_boliviensis
ENSTNIG00000010878	csde1	100	75.096	ENSSHAG00000009831	CSDE1	93	75.096	Sarcophilus_harrisii
ENSTNIG00000010878	csde1	100	85.214	ENSSFOG00015007498	csde1	93	85.214	Scleropages_formosus
ENSTNIG00000010878	csde1	100	86.786	ENSSMAG00000007203	csde1	93	86.786	Scophthalmus_maximus
ENSTNIG00000010878	csde1	100	88.214	ENSSDUG00000015380	csde1	93	84.674	Seriola_dumerili
ENSTNIG00000010878	csde1	100	94.636	ENSSLDG00000008819	csde1	93	94.636	Seriola_lalandi_dorsalis
ENSTNIG00000010878	csde1	100	73.946	ENSSARG00000000738	CSDE1	87	73.946	Sorex_araneus
ENSTNIG00000010878	csde1	100	83.270	ENSSPUG00000008714	CSDE1	93	83.270	Sphenodon_punctatus
ENSTNIG00000010878	csde1	100	94.636	ENSSPAG00000000716	csde1	88	94.636	Stegastes_partitus
ENSTNIG00000010878	csde1	100	81.749	ENSSSCG00000006752	CSDE1	88	81.749	Sus_scrofa
ENSTNIG00000010878	csde1	100	82.510	ENSTGUG00000000972	CSDE1	93	82.510	Taeniopygia_guttata
ENSTNIG00000010878	csde1	100	85.057	ENSTRUG00000007996	csde1	93	85.057	Takifugu_rubripes
ENSTNIG00000010878	csde1	100	72.797	ENSTTRG00000015583	CSDE1	87	72.797	Tursiops_truncatus
ENSTNIG00000010878	csde1	98	82.946	ENSUAMG00000021779	-	95	82.946	Ursus_americanus
ENSTNIG00000010878	csde1	98	67.164	ENSUAMG00000024289	-	78	67.164	Ursus_americanus
ENSTNIG00000010878	csde1	100	65.134	ENSUMAG00000009720	-	92	65.134	Ursus_maritimus
ENSTNIG00000010878	csde1	86	31.527	ENSUMAG00000011714	-	85	31.527	Ursus_maritimus
ENSTNIG00000010878	csde1	100	81.369	ENSVVUG00000009890	CSDE1	79	81.369	Vulpes_vulpes
ENSTNIG00000010878	csde1	100	82.955	ENSXETG00000021448	csde1	93	82.955	Xenopus_tropicalis
ENSTNIG00000010878	csde1	100	83.525	ENSXCOG00000000035	csde1	99	83.525	Xiphophorus_couchianus
ENSTNIG00000010878	csde1	100	93.103	ENSXMAG00000009080	csde1	88	93.103	Xiphophorus_maculatus