EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000011019 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 85359 bases
Position: chr19:2484020-2569378
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000013949	TUDOR	PF00567.24	4.5e-26	1	1
ENSTNIP00000013949	SNase	PF00565.17	3.4e-66	1	4
ENSTNIP00000013949	SNase	PF00565.17	3.4e-66	2	4
ENSTNIP00000013949	SNase	PF00565.17	3.4e-66	3	4
ENSTNIP00000013949	SNase	PF00565.17	3.4e-66	4	4
ENSTNIP00000013951	SNase	PF00565.17	6.9e-49	1	3
ENSTNIP00000013951	SNase	PF00565.17	6.9e-49	2	3
ENSTNIP00000013951	SNase	PF00565.17	6.9e-49	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000014144	-	3301	-	ENSTNIP00000013949	911 (aa)	-	H3D0B3
ENSTNIT00000014146	-	1827	-	ENSTNIP00000013951	609 (aa)	-	H3D0B5

Gene Model

Click here to download ENSTNIG00000011019's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000011019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000011019	snd1	95	87.219	ENSG00000197157	SND1	100	83.114	Homo_sapiens
ENSTNIG00000011019	snd1	100	92.975	ENSAPOG00000017599	snd1	100	92.975	Acanthochromis_polyacanthus
ENSTNIG00000011019	snd1	98	85.309	ENSAMEG00000004664	SND1	94	83.042	Ailuropoda_melanoleuca
ENSTNIG00000011019	snd1	100	89.352	ENSACIG00000003551	snd1	100	89.352	Amphilophus_citrinellus
ENSTNIG00000011019	snd1	100	93.414	ENSAOCG00000014166	snd1	100	93.414	Amphiprion_ocellaris
ENSTNIG00000011019	snd1	100	93.194	ENSAPEG00000007067	snd1	100	93.194	Amphiprion_percula
ENSTNIG00000011019	snd1	98	93.792	ENSATEG00000018475	snd1	89	92.170	Anabas_testudineus
ENSTNIG00000011019	snd1	98	84.228	ENSANAG00000034463	SND1	100	83.224	Aotus_nancymaae
ENSTNIG00000011019	snd1	100	92.975	ENSACLG00000022897	snd1	100	92.975	Astatotilapia_calliptera
ENSTNIG00000011019	snd1	99	89.121	ENSAMXG00000016318	snd1	99	89.121	Astyanax_mexicanus
ENSTNIG00000011019	snd1	98	84.452	ENSBTAG00000010692	SND1	100	83.443	Bos_taurus
ENSTNIG00000011019	snd1	98	50.000	WBGene00006626	tsn-1	99	47.267	Caenorhabditis_elegans
ENSTNIG00000011019	snd1	100	82.327	ENSCJAG00000017668	SND1	100	83.004	Callithrix_jacchus
ENSTNIG00000011019	snd1	98	85.595	ENSCAFG00000001700	SND1	100	83.333	Canis_familiaris
ENSTNIG00000011019	snd1	98	85.595	ENSCAFG00020021639	SND1	100	83.333	Canis_lupus_dingo
ENSTNIG00000011019	snd1	98	84.340	ENSCHIG00000023390	SND1	100	83.333	Capra_hircus
ENSTNIG00000011019	snd1	94	87.238	ENSTSYG00000004979	SND1	96	87.368	Carlito_syrichta
ENSTNIG00000011019	snd1	94	77.138	ENSCAPG00000010677	SND1	97	73.986	Cavia_aperea
ENSTNIG00000011019	snd1	95	87.565	ENSCPOG00000006251	SND1	100	83.004	Cavia_porcellus
ENSTNIG00000011019	snd1	98	84.228	ENSCCAG00000036847	SND1	100	83.224	Cebus_capucinus
ENSTNIG00000011019	snd1	98	84.452	ENSCATG00000035214	SND1	100	83.443	Cercocebus_atys
ENSTNIG00000011019	snd1	99	84.205	ENSCLAG00000011796	SND1	98	85.570	Chinchilla_lanigera
ENSTNIG00000011019	snd1	98	84.452	ENSCSAG00000010182	SND1	100	83.443	Chlorocebus_sabaeus
ENSTNIG00000011019	snd1	94	65.202	ENSCHOG00000002218	SND1	86	72.549	Choloepus_hoffmanni
ENSTNIG00000011019	snd1	98	85.738	ENSCPBG00000018094	SND1	100	83.425	Chrysemys_picta_bellii
ENSTNIG00000011019	snd1	95	61.092	ENSCING00000000524	-	99	55.375	Ciona_intestinalis
ENSTNIG00000011019	snd1	98	61.642	ENSCSAVG00000008807	-	99	56.346	Ciona_savignyi
ENSTNIG00000011019	snd1	98	84.452	ENSCANG00000035119	SND1	100	83.443	Colobus_angolensis_palliatus
ENSTNIG00000011019	snd1	97	85.473	ENSCGRG00001022514	Snd1	100	84.477	Cricetulus_griseus_chok1gshd
ENSTNIG00000011019	snd1	94	87.040	ENSCGRG00000012277	Snd1	99	83.973	Cricetulus_griseus_crigri
ENSTNIG00000011019	snd1	100	91.109	ENSCSEG00000008661	snd1	100	91.109	Cynoglossus_semilaevis
ENSTNIG00000011019	snd1	100	92.975	ENSCVAG00000010316	snd1	100	92.975	Cyprinodon_variegatus
ENSTNIG00000011019	snd1	98	90.772	ENSDARG00000006766	snd1	98	90.442	Danio_rerio
ENSTNIG00000011019	snd1	97	81.890	ENSDNOG00000006795	SND1	100	81.890	Dasypus_novemcinctus
ENSTNIG00000011019	snd1	95	87.047	ENSDORG00000000336	Snd1	100	83.004	Dipodomys_ordii
ENSTNIG00000011019	snd1	96	53.910	FBgn0035121	Tudor-SN	99	49.522	Drosophila_melanogaster
ENSTNIG00000011019	snd1	90	86.111	ENSETEG00000000375	SND1	92	86.111	Echinops_telfairi
ENSTNIG00000011019	snd1	91	63.636	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSTNIG00000011019	snd1	95	87.047	ENSEASG00005008513	SND1	100	81.985	Equus_asinus_asinus
ENSTNIG00000011019	snd1	98	84.116	ENSECAG00000011451	SND1	100	83.114	Equus_caballus
ENSTNIG00000011019	snd1	98	84.202	ENSEEUG00000014737	SND1	99	74.119	Erinaceus_europaeus
ENSTNIG00000011019	snd1	99	88.364	ENSELUG00000001805	snd1	96	88.364	Esox_lucius
ENSTNIG00000011019	snd1	98	85.762	ENSFCAG00000008289	SND1	100	83.443	Felis_catus
ENSTNIG00000011019	snd1	98	84.116	ENSFDAG00000015881	SND1	99	83.700	Fukomys_damarensis
ENSTNIG00000011019	snd1	98	93.289	ENSFHEG00000004093	snd1	99	92.036	Fundulus_heteroclitus
ENSTNIG00000011019	snd1	69	90.323	ENSGMOG00000018932	snd1	60	90.323	Gadus_morhua
ENSTNIG00000011019	snd1	53	86.740	ENSGALG00000052684	-	50	84.492	Gallus_gallus
ENSTNIG00000011019	snd1	100	92.975	ENSGAFG00000008421	snd1	100	92.975	Gambusia_affinis
ENSTNIG00000011019	snd1	100	60.521	ENSGACG00000019793	snd1	100	60.629	Gasterosteus_aculeatus
ENSTNIG00000011019	snd1	95	87.392	ENSGGOG00000009614	SND1	100	83.333	Gorilla_gorilla
ENSTNIG00000011019	snd1	100	92.975	ENSHBUG00000019135	snd1	100	92.975	Haplochromis_burtoni
ENSTNIG00000011019	snd1	97	85.473	ENSHGLG00000003618	SND1	98	85.786	Heterocephalus_glaber_female
ENSTNIG00000011019	snd1	97	86.003	ENSHGLG00100012449	SND1	99	83.260	Heterocephalus_glaber_male
ENSTNIG00000011019	snd1	100	91.438	ENSHCOG00000005266	snd1	100	91.438	Hippocampus_comes
ENSTNIG00000011019	snd1	98	90.101	ENSIPUG00000013279	snd1	99	87.816	Ictalurus_punctatus
ENSTNIG00000011019	snd1	95	87.392	ENSSTOG00000002140	SND1	100	83.224	Ictidomys_tridecemlineatus
ENSTNIG00000011019	snd1	98	84.116	ENSJJAG00000009561	Snd1	100	83.114	Jaculus_jaculus
ENSTNIG00000011019	snd1	100	92.645	ENSKMAG00000016997	snd1	100	92.645	Kryptolebias_marmoratus
ENSTNIG00000011019	snd1	100	92.773	ENSLBEG00000013563	snd1	100	91.877	Labrus_bergylta
ENSTNIG00000011019	snd1	99	88.079	ENSLOCG00000015537	snd1	100	87.609	Lepisosteus_oculatus
ENSTNIG00000011019	snd1	97	86.172	ENSLAFG00000009696	SND1	99	83.590	Loxodonta_africana
ENSTNIG00000011019	snd1	98	84.452	ENSMFAG00000038114	SND1	100	83.443	Macaca_fascicularis
ENSTNIG00000011019	snd1	95	87.478	ENSMMUG00000015432	SND1	100	83.443	Macaca_mulatta
ENSTNIG00000011019	snd1	98	84.452	ENSMNEG00000039808	SND1	97	87.478	Macaca_nemestrina
ENSTNIG00000011019	snd1	95	87.392	ENSMLEG00000029040	SND1	97	87.478	Mandrillus_leucophaeus
ENSTNIG00000011019	snd1	100	92.206	ENSMAMG00000011739	snd1	100	92.206	Mastacembelus_armatus
ENSTNIG00000011019	snd1	100	92.975	ENSMZEG00005005681	snd1	100	92.975	Maylandia_zebra
ENSTNIG00000011019	snd1	95	87.392	ENSMICG00000000097	SND1	100	83.224	Microcebus_murinus
ENSTNIG00000011019	snd1	98	84.340	ENSMOCG00000005040	Snd1	100	83.333	Microtus_ochrogaster
ENSTNIG00000011019	snd1	100	92.645	ENSMMOG00000001795	snd1	100	92.645	Mola_mola
ENSTNIG00000011019	snd1	98	83.669	ENSMODG00000015182	SND1	100	82.932	Monodelphis_domestica
ENSTNIG00000011019	snd1	100	92.097	ENSMALG00000012071	snd1	100	92.097	Monopterus_albus
ENSTNIG00000011019	snd1	97	85.304	MGP_CAROLIEiJ_G0028159	Snd1	99	85.378	Mus_caroli
ENSTNIG00000011019	snd1	97	84.797	ENSMUSG00000001424	Snd1	100	83.443	Mus_musculus
ENSTNIG00000011019	snd1	97	85.135	MGP_PahariEiJ_G0021917	Snd1	100	85.378	Mus_pahari
ENSTNIG00000011019	snd1	97	85.135	MGP_SPRETEiJ_G0029159	Snd1	100	83.770	Mus_spretus
ENSTNIG00000011019	snd1	98	85.595	ENSMPUG00000006545	SND1	100	83.114	Mustela_putorius_furo
ENSTNIG00000011019	snd1	94	86.911	ENSMLUG00000017130	SND1	99	83.055	Myotis_lucifugus
ENSTNIG00000011019	snd1	98	84.228	ENSNGAG00000011186	Snd1	100	83.479	Nannospalax_galili
ENSTNIG00000011019	snd1	100	92.755	ENSNBRG00000006681	snd1	100	92.755	Neolamprologus_brichardi
ENSTNIG00000011019	snd1	98	86.265	ENSNLEG00000012263	SND1	99	86.265	Nomascus_leucogenys
ENSTNIG00000011019	snd1	91	86.111	ENSOPRG00000013405	SND1	92	86.111	Ochotona_princeps
ENSTNIG00000011019	snd1	96	86.986	ENSODEG00000011502	SND1	100	83.443	Octodon_degus
ENSTNIG00000011019	snd1	100	92.426	ENSONIG00000011481	snd1	97	92.426	Oreochromis_niloticus
ENSTNIG00000011019	snd1	98	83.371	ENSOANG00000000817	SND1	99	82.088	Ornithorhynchus_anatinus
ENSTNIG00000011019	snd1	98	85.427	ENSOCUG00000001620	SND1	100	82.785	Oryctolagus_cuniculus
ENSTNIG00000011019	snd1	100	91.328	ENSORLG00000015201	snd1	100	91.328	Oryzias_latipes
ENSTNIG00000011019	snd1	100	91.548	ENSORLG00020013991	snd1	100	91.548	Oryzias_latipes_hni
ENSTNIG00000011019	snd1	100	91.548	ENSORLG00015012436	snd1	100	91.548	Oryzias_latipes_hsok
ENSTNIG00000011019	snd1	100	91.767	ENSOMEG00000006406	snd1	100	91.767	Oryzias_melastigma
ENSTNIG00000011019	snd1	98	84.152	ENSOGAG00000013356	SND1	94	83.406	Otolemur_garnettii
ENSTNIG00000011019	snd1	94	87.215	ENSOARG00000002149	SND1	100	81.849	Ovis_aries
ENSTNIG00000011019	snd1	95	87.392	ENSPPAG00000042947	SND1	100	83.224	Pan_paniscus
ENSTNIG00000011019	snd1	98	85.762	ENSPPRG00000004494	SND1	100	83.443	Panthera_pardus
ENSTNIG00000011019	snd1	98	85.762	ENSPTIG00000014214	SND1	100	83.333	Panthera_tigris_altaica
ENSTNIG00000011019	snd1	95	87.392	ENSPTRG00000023911	SND1	100	83.224	Pan_troglodytes
ENSTNIG00000011019	snd1	95	87.392	ENSPANG00000011997	SND1	99	84.424	Papio_anubis
ENSTNIG00000011019	snd1	99	85.667	ENSPKIG00000023494	snd1	99	85.060	Paramormyrops_kingsleyae
ENSTNIG00000011019	snd1	91	92.793	ENSPMGG00000003629	snd1	100	91.388	Periophthalmus_magnuspinnatus
ENSTNIG00000011019	snd1	98	84.228	ENSPEMG00000010240	Snd1	100	83.224	Peromyscus_maniculatus_bairdii
ENSTNIG00000011019	snd1	94	79.232	ENSPMAG00000007915	-	99	73.476	Petromyzon_marinus
ENSTNIG00000011019	snd1	98	84.004	ENSPCIG00000011561	SND1	100	83.260	Phascolarctos_cinereus
ENSTNIG00000011019	snd1	100	92.865	ENSPFOG00000001557	snd1	100	92.865	Poecilia_formosa
ENSTNIG00000011019	snd1	100	93.085	ENSPLAG00000018459	snd1	97	93.085	Poecilia_latipinna
ENSTNIG00000011019	snd1	100	93.304	ENSPMEG00000006803	snd1	100	93.304	Poecilia_mexicana
ENSTNIG00000011019	snd1	100	93.085	ENSPREG00000002189	snd1	100	93.085	Poecilia_reticulata
ENSTNIG00000011019	snd1	95	87.565	ENSPPYG00000017972	SND1	100	86.111	Pongo_abelii
ENSTNIG00000011019	snd1	100	73.246	ENSPCAG00000011305	SND1	99	73.678	Procavia_capensis
ENSTNIG00000011019	snd1	95	87.392	ENSPCOG00000026791	SND1	100	84.329	Propithecus_coquereli
ENSTNIG00000011019	snd1	98	82.327	ENSPVAG00000013945	SND1	100	81.360	Pteropus_vampyrus
ENSTNIG00000011019	snd1	100	92.865	ENSPNYG00000000932	snd1	100	92.865	Pundamilia_nyererei
ENSTNIG00000011019	snd1	99	88.791	ENSPNAG00000001206	snd1	99	88.791	Pygocentrus_nattereri
ENSTNIG00000011019	snd1	98	83.669	ENSRNOG00000031173	Snd1	100	83.133	Rattus_norvegicus
ENSTNIG00000011019	snd1	94	87.828	ENSRBIG00000027782	-	93	87.879	Rhinopithecus_bieti
ENSTNIG00000011019	snd1	98	84.452	ENSRROG00000033020	SND1	100	83.443	Rhinopithecus_roxellana
ENSTNIG00000011019	snd1	98	85.185	ENSSBOG00000032461	SND1	100	83.224	Saimiri_boliviensis_boliviensis
ENSTNIG00000011019	snd1	98	80.787	ENSSHAG00000015359	SND1	100	80.787	Sarcophilus_harrisii
ENSTNIG00000011019	snd1	98	87.140	ENSSFOG00015001103	snd1	99	86.166	Scleropages_formosus
ENSTNIG00000011019	snd1	100	91.767	ENSSMAG00000001932	snd1	95	91.767	Scophthalmus_maximus
ENSTNIG00000011019	snd1	100	92.865	ENSSDUG00000002699	snd1	94	92.865	Seriola_dumerili
ENSTNIG00000011019	snd1	100	85.950	ENSSLDG00000001950	snd1	100	85.950	Seriola_lalandi_dorsalis
ENSTNIG00000011019	snd1	94	80.385	ENSSARG00000004877	SND1	92	79.823	Sorex_araneus
ENSTNIG00000011019	snd1	97	78.691	ENSSPUG00000017586	SND1	96	80.416	Sphenodon_punctatus
ENSTNIG00000011019	snd1	99	92.667	ENSSPAG00000021398	snd1	99	92.893	Stegastes_partitus
ENSTNIG00000011019	snd1	98	84.228	ENSSSCG00000016590	SND1	100	83.224	Sus_scrofa
ENSTNIG00000011019	snd1	100	97.500	ENSTRUG00000014067	snd1	100	96.926	Takifugu_rubripes
ENSTNIG00000011019	snd1	94	79.335	ENSTBEG00000003999	SND1	100	78.824	Tupaia_belangeri
ENSTNIG00000011019	snd1	98	79.978	ENSTTRG00000006059	SND1	100	79.057	Tursiops_truncatus
ENSTNIG00000011019	snd1	92	77.285	ENSUAMG00000002820	-	89	77.285	Ursus_americanus
ENSTNIG00000011019	snd1	88	82.700	ENSUAMG00000005604	-	93	82.700	Ursus_americanus
ENSTNIG00000011019	snd1	98	85.762	ENSUMAG00000005960	SND1	100	83.224	Ursus_maritimus
ENSTNIG00000011019	snd1	94	77.680	ENSVPAG00000008302	SND1	74	86.111	Vicugna_pacos
ENSTNIG00000011019	snd1	98	85.427	ENSVVUG00000007226	SND1	100	83.224	Vulpes_vulpes
ENSTNIG00000011019	snd1	94	86.340	ENSXETG00000023043	snd1	100	81.336	Xenopus_tropicalis
ENSTNIG00000011019	snd1	91	94.404	ENSXCOG00000013629	snd1	99	90.618	Xiphophorus_couchianus
ENSTNIG00000011019	snd1	100	93.414	ENSXMAG00000011469	snd1	100	93.414	Xiphophorus_maculatus