EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000011538 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 12597 bases
Position: chr2:9146747-9159343
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000014488	Rif1_N	PF12231.8	3.7e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000014687	-	6885	-	ENSTNIP00000014488	2294 (aa)	-	H3D1V0

Gene Model

Click here to download ENSTNIG00000011538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000011538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000011538	rif1	78	47.907	ENSG00000080345	RIF1	97	53.012	Homo_sapiens
ENSTNIG00000011538	rif1	95	65.838	ENSAPOG00000011073	rif1	84	65.748	Acanthochromis_polyacanthus
ENSTNIG00000011538	rif1	68	51.818	ENSAMEG00000008461	RIF1	64	51.818	Ailuropoda_melanoleuca
ENSTNIG00000011538	rif1	87	69.385	ENSACIG00000017765	rif1	93	69.018	Amphilophus_citrinellus
ENSTNIG00000011538	rif1	93	66.054	ENSAOCG00000017231	rif1	85	65.789	Amphiprion_ocellaris
ENSTNIG00000011538	rif1	63	72.317	ENSAPEG00000013228	rif1	63	69.873	Amphiprion_percula
ENSTNIG00000011538	rif1	99	51.836	ENSATEG00000022887	rif1	80	63.453	Anabas_testudineus
ENSTNIG00000011538	rif1	68	48.441	ENSACAG00000003714	RIF1	66	48.441	Anolis_carolinensis
ENSTNIG00000011538	rif1	73	47.865	ENSANAG00000024840	RIF1	69	47.826	Aotus_nancymaae
ENSTNIG00000011538	rif1	61	48.949	ENSBTAG00000021020	RIF1	63	50.610	Bos_taurus
ENSTNIG00000011538	rif1	70	50.755	ENSCJAG00000003138	RIF1	66	50.755	Callithrix_jacchus
ENSTNIG00000011538	rif1	70	50.303	ENSCAFG00000005670	RIF1	63	50.303	Canis_familiaris
ENSTNIG00000011538	rif1	72	46.992	ENSCAFG00020016401	RIF1	66	50.303	Canis_lupus_dingo
ENSTNIG00000011538	rif1	69	48.965	ENSCHIG00000020327	RIF1	65	48.965	Capra_hircus
ENSTNIG00000011538	rif1	67	51.360	ENSTSYG00000008861	RIF1	62	51.360	Carlito_syrichta
ENSTNIG00000011538	rif1	57	44.648	ENSCAPG00000008957	RIF1	65	44.512	Cavia_aperea
ENSTNIG00000011538	rif1	67	49.235	ENSCPOG00000037898	RIF1	65	49.235	Cavia_porcellus
ENSTNIG00000011538	rif1	73	47.733	ENSCCAG00000024760	RIF1	68	47.733	Cebus_capucinus
ENSTNIG00000011538	rif1	75	48.173	ENSCATG00000033353	RIF1	68	48.204	Cercocebus_atys
ENSTNIG00000011538	rif1	66	48.930	ENSCLAG00000001517	RIF1	64	48.930	Chinchilla_lanigera
ENSTNIG00000011538	rif1	74	47.542	ENSCSAG00000016089	RIF1	70	47.570	Chlorocebus_sabaeus
ENSTNIG00000011538	rif1	64	49.560	ENSCHOG00000007187	RIF1	60	49.560	Choloepus_hoffmanni
ENSTNIG00000011538	rif1	72	49.015	ENSCPBG00000025885	RIF1	71	49.881	Chrysemys_picta_bellii
ENSTNIG00000011538	rif1	76	47.464	ENSCANG00000028962	RIF1	66	56.322	Colobus_angolensis_palliatus
ENSTNIG00000011538	rif1	71	47.929	ENSCGRG00001024589	Rif1	68	49.568	Cricetulus_griseus_chok1gshd
ENSTNIG00000011538	rif1	70	47.727	ENSCGRG00000010713	Rif1	68	49.568	Cricetulus_griseus_crigri
ENSTNIG00000011538	rif1	65	61.999	ENSCSEG00000003945	rif1	65	61.533	Cynoglossus_semilaevis
ENSTNIG00000011538	rif1	78	56.967	ENSCVAG00000022479	rif1	99	54.156	Cyprinodon_variegatus
ENSTNIG00000011538	rif1	76	57.133	ENSDARG00000062650	rif1	73	56.961	Danio_rerio
ENSTNIG00000011538	rif1	73	48.370	ENSDNOG00000011194	RIF1	66	48.370	Dasypus_novemcinctus
ENSTNIG00000011538	rif1	68	47.181	ENSETEG00000012421	RIF1	63	47.181	Echinops_telfairi
ENSTNIG00000011538	rif1	71	50.442	ENSEASG00005023434	RIF1	52	65.094	Equus_asinus_asinus
ENSTNIG00000011538	rif1	69	55.230	ENSECAG00000012679	RIF1	64	55.230	Equus_caballus
ENSTNIG00000011538	rif1	71	62.791	ENSELUG00000006826	rif1	67	62.791	Esox_lucius
ENSTNIG00000011538	rif1	64	52.158	ENSFCAG00000029742	RIF1	67	47.866	Felis_catus
ENSTNIG00000011538	rif1	58	44.813	ENSFALG00000013874	RIF1	50	51.750	Ficedula_albicollis
ENSTNIG00000011538	rif1	68	48.928	ENSFDAG00000006538	RIF1	64	48.943	Fukomys_damarensis
ENSTNIG00000011538	rif1	99	54.269	ENSFHEG00000013721	rif1	90	62.872	Fundulus_heteroclitus
ENSTNIG00000011538	rif1	70	63.846	ENSGMOG00000003517	rif1	94	63.846	Gadus_morhua
ENSTNIG00000011538	rif1	96	72.970	ENSGAFG00000017196	rif1	79	73.399	Gambusia_affinis
ENSTNIG00000011538	rif1	76	77.447	ENSGACG00000008579	rif1	77	77.311	Gasterosteus_aculeatus
ENSTNIG00000011538	rif1	69	48.857	ENSGAGG00000012595	RIF1	71	47.686	Gopherus_agassizii
ENSTNIG00000011538	rif1	66	57.308	ENSGGOG00000040178	RIF1	59	57.308	Gorilla_gorilla
ENSTNIG00000011538	rif1	99	58.296	ENSHBUG00000007125	rif1	99	59.130	Haplochromis_burtoni
ENSTNIG00000011538	rif1	62	51.196	ENSHGLG00100009807	RIF1	62	51.196	Heterocephalus_glaber_male
ENSTNIG00000011538	rif1	79	61.561	ENSHCOG00000015943	rif1	70	61.561	Hippocampus_comes
ENSTNIG00000011538	rif1	89	63.497	ENSIPUG00000021703	rif1	71	63.497	Ictalurus_punctatus
ENSTNIG00000011538	rif1	68	49.173	ENSSTOG00000020712	RIF1	63	50.888	Ictidomys_tridecemlineatus
ENSTNIG00000011538	rif1	53	47.562	ENSJJAG00000023000	Rif1	55	45.700	Jaculus_jaculus
ENSTNIG00000011538	rif1	68	61.481	ENSKMAG00000002852	rif1	66	61.357	Kryptolebias_marmoratus
ENSTNIG00000011538	rif1	79	68.082	ENSLBEG00000023196	rif1	71	67.009	Labrus_bergylta
ENSTNIG00000011538	rif1	60	50.925	ENSLACG00000005425	RIF1	67	47.163	Latimeria_chalumnae
ENSTNIG00000011538	rif1	81	58.410	ENSLOCG00000002657	rif1	87	55.707	Lepisosteus_oculatus
ENSTNIG00000011538	rif1	70	49.759	ENSLAFG00000009796	RIF1	66	49.759	Loxodonta_africana
ENSTNIG00000011538	rif1	77	47.149	ENSMFAG00000032233	RIF1	68	48.054	Macaca_fascicularis
ENSTNIG00000011538	rif1	72	47.745	ENSMMUG00000008611	RIF1	68	48.054	Macaca_mulatta
ENSTNIG00000011538	rif1	77	48.173	ENSMNEG00000031616	RIF1	68	48.204	Macaca_nemestrina
ENSTNIG00000011538	rif1	77	48.173	ENSMLEG00000042945	RIF1	68	48.204	Mandrillus_leucophaeus
ENSTNIG00000011538	rif1	86	69.626	ENSMZEG00005020920	rif1	99	57.387	Maylandia_zebra
ENSTNIG00000011538	rif1	66	50.822	ENSMGAG00000012732	RIF1	53	50.822	Meleagris_gallopavo
ENSTNIG00000011538	rif1	65	62.500	ENSMAUG00000013158	Rif1	65	62.500	Mesocricetus_auratus
ENSTNIG00000011538	rif1	68	51.057	ENSMICG00000046127	RIF1	64	51.057	Microcebus_murinus
ENSTNIG00000011538	rif1	55	46.325	ENSMOCG00000009381	Rif1	53	46.366	Microtus_ochrogaster
ENSTNIG00000011538	rif1	100	56.595	ENSMMOG00000006519	rif1	99	56.413	Mola_mola
ENSTNIG00000011538	rif1	70	49.167	ENSMODG00000003703	RIF1	68	49.167	Monodelphis_domestica
ENSTNIG00000011538	rif1	80	64.943	ENSMALG00000016759	rif1	96	61.693	Monopterus_albus
ENSTNIG00000011538	rif1	69	51.282	MGP_CAROLIEiJ_G0023555	Rif1	66	51.282	Mus_caroli
ENSTNIG00000011538	rif1	73	44.472	MGP_PahariEiJ_G0025006	Rif1	71	49.254	Mus_pahari
ENSTNIG00000011538	rif1	74	48.612	ENSMPUG00000000371	RIF1	65	48.837	Mustela_putorius_furo
ENSTNIG00000011538	rif1	58	45.949	ENSMLUG00000003376	RIF1	61	45.949	Myotis_lucifugus
ENSTNIG00000011538	rif1	68	49.850	ENSNGAG00000009268	Rif1	66	51.524	Nannospalax_galili
ENSTNIG00000011538	rif1	79	69.193	ENSNBRG00000014257	rif1	99	57.299	Neolamprologus_brichardi
ENSTNIG00000011538	rif1	77	47.290	ENSNLEG00000010955	RIF1	67	47.290	Nomascus_leucogenys
ENSTNIG00000011538	rif1	51	60.593	ENSMEUG00000007601	-	53	60.593	Notamacropus_eugenii
ENSTNIG00000011538	rif1	70	46.827	ENSODEG00000003950	RIF1	64	48.665	Octodon_degus
ENSTNIG00000011538	rif1	88	57.338	ENSONIG00000013657	rif1	99	58.668	Oreochromis_niloticus
ENSTNIG00000011538	rif1	57	53.069	ENSOANG00000006078	-	55	53.169	Ornithorhynchus_anatinus
ENSTNIG00000011538	rif1	69	50.153	ENSOCUG00000017435	RIF1	64	50.153	Oryctolagus_cuniculus
ENSTNIG00000011538	rif1	99	50.642	ENSORLG00020001302	rif1	74	63.557	Oryzias_latipes_hni
ENSTNIG00000011538	rif1	99	52.249	ENSORLG00015000009	rif1	74	62.319	Oryzias_latipes_hsok
ENSTNIG00000011538	rif1	70	48.048	ENSOGAG00000006141	RIF1	63	49.704	Otolemur_garnettii
ENSTNIG00000011538	rif1	69	49.324	ENSOARG00000008930	RIF1	65	49.324	Ovis_aries
ENSTNIG00000011538	rif1	78	47.907	ENSPPAG00000023754	RIF1	67	48.760	Pan_paniscus
ENSTNIG00000011538	rif1	72	47.786	ENSPPRG00000003618	RIF1	66	47.939	Panthera_pardus
ENSTNIG00000011538	rif1	72	47.786	ENSPTIG00000020652	RIF1	66	47.939	Panthera_tigris_altaica
ENSTNIG00000011538	rif1	78	47.982	ENSPTRG00000012534	RIF1	67	48.760	Pan_troglodytes
ENSTNIG00000011538	rif1	77	48.098	ENSPANG00000008525	RIF1	68	48.129	Papio_anubis
ENSTNIG00000011538	rif1	64	53.316	ENSPKIG00000004267	rif1	60	56.077	Paramormyrops_kingsleyae
ENSTNIG00000011538	rif1	82	60.411	ENSPMGG00000016141	rif1	91	60.411	Periophthalmus_magnuspinnatus
ENSTNIG00000011538	rif1	69	49.401	ENSPEMG00000000446	Rif1	67	50.760	Peromyscus_maniculatus_bairdii
ENSTNIG00000011538	rif1	78	47.384	ENSPCIG00000009185	RIF1	73	47.428	Phascolarctos_cinereus
ENSTNIG00000011538	rif1	92	54.024	ENSPFOG00000000554	-	99	54.083	Poecilia_formosa
ENSTNIG00000011538	rif1	99	55.476	ENSPFOG00000017804	rif1	99	55.313	Poecilia_formosa
ENSTNIG00000011538	rif1	92	68.506	ENSPLAG00000017945	rif1	99	54.369	Poecilia_latipinna
ENSTNIG00000011538	rif1	56	62.851	ENSPMEG00000006897	-	60	62.633	Poecilia_mexicana
ENSTNIG00000011538	rif1	89	73.984	ENSPREG00000018052	rif1	99	65.849	Poecilia_reticulata
ENSTNIG00000011538	rif1	77	48.090	ENSPPYG00000012846	RIF1	72	48.204	Pongo_abelii
ENSTNIG00000011538	rif1	69	51.057	ENSPCOG00000027888	RIF1	65	51.057	Propithecus_coquereli
ENSTNIG00000011538	rif1	60	59.959	ENSPVAG00000014276	RIF1	58	59.959	Pteropus_vampyrus
ENSTNIG00000011538	rif1	93	63.095	ENSPNYG00000012940	rif1	99	56.158	Pundamilia_nyererei
ENSTNIG00000011538	rif1	75	50.967	ENSPNAG00000016685	rif1	57	58.103	Pygocentrus_nattereri
ENSTNIG00000011538	rif1	71	46.305	ENSRNOG00000054901	Rif1	67	47.123	Rattus_norvegicus
ENSTNIG00000011538	rif1	78	47.072	ENSRBIG00000003704	RIF1	68	49.036	Rhinopithecus_bieti
ENSTNIG00000011538	rif1	78	47.581	ENSRROG00000028206	RIF1	68	49.036	Rhinopithecus_roxellana
ENSTNIG00000011538	rif1	67	54.878	ENSSBOG00000029530	RIF1	67	54.878	Saimiri_boliviensis_boliviensis
ENSTNIG00000011538	rif1	68	50.000	ENSSHAG00000018552	RIF1	65	50.904	Sarcophilus_harrisii
ENSTNIG00000011538	rif1	83	72.699	ENSSMAG00000011704	rif1	86	72.699	Scophthalmus_maximus
ENSTNIG00000011538	rif1	63	68.878	ENSSDUG00000015632	rif1	62	69.580	Seriola_dumerili
ENSTNIG00000011538	rif1	99	58.310	ENSSLDG00000019531	rif1	75	62.096	Seriola_lalandi_dorsalis
ENSTNIG00000011538	rif1	66	49.251	ENSSPUG00000003062	RIF1	67	49.851	Sphenodon_punctatus
ENSTNIG00000011538	rif1	65	74.338	ENSSPAG00000018359	rif1	94	74.338	Stegastes_partitus
ENSTNIG00000011538	rif1	70	50.432	ENSSSCG00000016395	RIF1	66	50.720	Sus_scrofa
ENSTNIG00000011538	rif1	99	72.743	ENSTRUG00000015808	rif1	99	72.615	Takifugu_rubripes
ENSTNIG00000011538	rif1	61	52.749	ENSTBEG00000016082	RIF1	56	52.749	Tupaia_belangeri
ENSTNIG00000011538	rif1	68	49.429	ENSTTRG00000011190	RIF1	63	49.429	Tursiops_truncatus
ENSTNIG00000011538	rif1	58	51.515	ENSUAMG00000026385	RIF1	59	51.515	Ursus_americanus
ENSTNIG00000011538	rif1	68	51.515	ENSUMAG00000000337	RIF1	63	51.515	Ursus_maritimus
ENSTNIG00000011538	rif1	69	48.434	ENSVPAG00000002162	RIF1	63	48.434	Vicugna_pacos
ENSTNIG00000011538	rif1	70	50.000	ENSVVUG00000011293	RIF1	66	50.000	Vulpes_vulpes
ENSTNIG00000011538	rif1	73	45.996	ENSXETG00000004530	rif1	75	45.205	Xenopus_tropicalis
ENSTNIG00000011538	rif1	99	51.215	ENSXMAG00000000506	rif1	99	51.347	Xiphophorus_maculatus