EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000011779 (Gene tree)
Gene ID: -
Gene Symbol: srrt
Alias: CHUNP6881|ars2|zgc:92060
Full Name: serrate RNA effector molecule homolog (Arabidopsis)
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 6105 bases
Position: chr7:5844048-5850152
Accession: ZDB-GENE-020419-13
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000014732	ARS2	PF04959.13	7e-88	1	1
ENSTNIP00000001700	ARS2	PF04959.13	7.5e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000014932	-	2176	-	ENSTNIP00000014732	644 (aa)	-	H3D2J4
ENSTNIT00000003634	-	2209	-	ENSTNIP00000001700	655 (aa)	-	H3C0D4

Gene Model

Click here to download ENSTNIG00000011779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000011779's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000011779	srrt	100	51.946	ENSTNIG00000003111	-	74	52.226

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000011779	srrt	100	62.760	ENSG00000087087	SRRT	98	86.957	Homo_sapiens
ENSTNIG00000011779	srrt	73	89.597	ENSAPOG00000002304	srrt	74	79.464	Acanthochromis_polyacanthus
ENSTNIG00000011779	srrt	100	60.997	ENSAMEG00000014506	SRRT	74	61.267	Ailuropoda_melanoleuca
ENSTNIG00000011779	srrt	85	88.486	ENSACIG00000015795	srrt	67	88.060	Amphilophus_citrinellus
ENSTNIG00000011779	srrt	72	62.473	ENSAOCG00000009189	-	74	54.235	Amphiprion_ocellaris
ENSTNIG00000011779	srrt	84	89.384	ENSAOCG00000009693	srrt	67	88.960	Amphiprion_ocellaris
ENSTNIG00000011779	srrt	89	50.584	ENSAPEG00000020016	-	74	54.235	Amphiprion_percula
ENSTNIG00000011779	srrt	87	89.384	ENSAPEG00000003646	srrt	70	87.872	Amphiprion_percula
ENSTNIG00000011779	srrt	100	76.048	ENSATEG00000014425	srrt	66	86.809	Anabas_testudineus
ENSTNIG00000011779	srrt	73	60.996	ENSATEG00000003652	-	85	62.762	Anabas_testudineus
ENSTNIG00000011779	srrt	73	71.097	ENSACAG00000001014	SRRT	74	60.909	Anolis_carolinensis
ENSTNIG00000011779	srrt	72	72.765	ENSANAG00000031718	SRRT	74	62.179	Aotus_nancymaae
ENSTNIG00000011779	srrt	73	87.633	ENSACLG00000013156	srrt	71	75.486	Astatotilapia_calliptera
ENSTNIG00000011779	srrt	72	63.789	ENSACLG00000009423	-	75	51.542	Astatotilapia_calliptera
ENSTNIG00000011779	srrt	71	77.657	ENSAMXG00000016671	srrt	71	64.438	Astyanax_mexicanus
ENSTNIG00000011779	srrt	100	61.070	ENSBTAG00000001134	SRRT	74	62.215	Bos_taurus
ENSTNIG00000011779	srrt	100	60.961	ENSCJAG00000014917	SRRT	74	61.854	Callithrix_jacchus
ENSTNIG00000011779	srrt	100	61.550	ENSCAFG00000023538	SRRT	74	62.519	Canis_familiaris
ENSTNIG00000011779	srrt	100	62.328	ENSCAFG00020013358	SRRT	74	62.652	Canis_lupus_dingo
ENSTNIG00000011779	srrt	100	61.228	ENSCHIG00000010495	SRRT	75	62.385	Capra_hircus
ENSTNIG00000011779	srrt	100	61.411	ENSTSYG00000036426	SRRT	79	62.405	Carlito_syrichta
ENSTNIG00000011779	srrt	72	73.673	ENSCAPG00000013586	SRRT	89	68.958	Cavia_aperea
ENSTNIG00000011779	srrt	72	72.199	ENSCPOG00000001739	SRRT	74	61.826	Cavia_porcellus
ENSTNIG00000011779	srrt	100	61.228	ENSCCAG00000015877	SRRT	74	62.179	Cebus_capucinus
ENSTNIG00000011779	srrt	100	62.760	ENSCATG00000036306	SRRT	76	61.343	Cercocebus_atys
ENSTNIG00000011779	srrt	100	61.087	ENSCLAG00000007568	SRRT	89	69.767	Chinchilla_lanigera
ENSTNIG00000011779	srrt	100	61.286	ENSCSAG00000017996	SRRT	74	62.236	Chlorocebus_sabaeus
ENSTNIG00000011779	srrt	55	73.171	ENSCHOG00000007815	SRRT	55	69.524	Choloepus_hoffmanni
ENSTNIG00000011779	srrt	72	60.714	ENSCPBG00000011553	SRRT	58	60.459	Chrysemys_picta_bellii
ENSTNIG00000011779	srrt	99	42.363	ENSCING00000003506	-	54	50.000	Ciona_intestinalis
ENSTNIG00000011779	srrt	99	42.152	ENSCSAVG00000008394	-	57	54.958	Ciona_savignyi
ENSTNIG00000011779	srrt	72	73.013	ENSCANG00000034556	SRRT	74	62.367	Colobus_angolensis_palliatus
ENSTNIG00000011779	srrt	100	62.611	ENSCGRG00001001594	Srrt	74	62.576	Cricetulus_griseus_chok1gshd
ENSTNIG00000011779	srrt	99	61.070	ENSCGRG00000007292	Srrt	89	70.402	Cricetulus_griseus_crigri
ENSTNIG00000011779	srrt	99	66.866	ENSCSEG00000017878	srrt	73	66.269	Cynoglossus_semilaevis
ENSTNIG00000011779	srrt	73	61.331	ENSCSEG00000005233	-	54	60.331	Cynoglossus_semilaevis
ENSTNIG00000011779	srrt	96	49.158	ENSCVAG00000017344	-	73	52.809	Cyprinodon_variegatus
ENSTNIG00000011779	srrt	100	73.485	ENSCVAG00000019848	srrt	74	75.635	Cyprinodon_variegatus
ENSTNIG00000011779	srrt	100	68.483	ENSDARG00000017762	srrt	74	68.189	Danio_rerio
ENSTNIG00000011779	srrt	72	72.765	ENSDNOG00000003851	SRRT	74	62.215	Dasypus_novemcinctus
ENSTNIG00000011779	srrt	100	61.573	ENSDORG00000005584	Srrt	89	70.213	Dipodomys_ordii
ENSTNIG00000011779	srrt	95	52.381	FBgn0033062	Ars2	51	52.381	Drosophila_melanogaster
ENSTNIG00000011779	srrt	72	70.552	ENSETEG00000016175	SRRT	54	70.564	Echinops_telfairi
ENSTNIG00000011779	srrt	100	51.302	ENSEBUG00000008517	-	75	59.034	Eptatretus_burgeri
ENSTNIG00000011779	srrt	100	62.500	ENSEASG00005016956	SRRT	74	62.215	Equus_asinus_asinus
ENSTNIG00000011779	srrt	100	62.500	ENSECAG00000012292	SRRT	74	62.215	Equus_caballus
ENSTNIG00000011779	srrt	89	68.513	ENSEEUG00000009117	SRRT	67	68.468	Erinaceus_europaeus
ENSTNIG00000011779	srrt	73	65.369	ENSELUG00000021216	-	74	53.431	Esox_lucius
ENSTNIG00000011779	srrt	100	66.523	ENSELUG00000006651	srrt	75	65.180	Esox_lucius
ENSTNIG00000011779	srrt	100	61.699	ENSFCAG00000006855	SRRT	74	62.215	Felis_catus
ENSTNIG00000011779	srrt	72	70.299	ENSFDAG00000021347	SRRT	88	65.812	Fukomys_damarensis
ENSTNIG00000011779	srrt	76	82.436	ENSFHEG00000002756	srrt	65	82.436	Fundulus_heteroclitus
ENSTNIG00000011779	srrt	72	54.845	ENSFHEG00000004105	-	93	53.653	Fundulus_heteroclitus
ENSTNIG00000011779	srrt	100	67.868	ENSGMOG00000018619	srrt	74	67.718	Gadus_morhua
ENSTNIG00000011779	srrt	75	74.419	ENSGMOG00000018694	-	72	54.058	Gadus_morhua
ENSTNIG00000011779	srrt	100	52.977	ENSGAFG00000020383	-	73	53.528	Gambusia_affinis
ENSTNIG00000011779	srrt	73	85.288	ENSGAFG00000005423	srrt	74	75.862	Gambusia_affinis
ENSTNIG00000011779	srrt	100	76.741	ENSGACG00000020387	srrt	74	76.523	Gasterosteus_aculeatus
ENSTNIG00000011779	srrt	75	59.305	ENSGACG00000001100	-	52	61.378	Gasterosteus_aculeatus
ENSTNIG00000011779	srrt	100	61.411	ENSGGOG00000001508	SRRT	74	62.367	Gorilla_gorilla
ENSTNIG00000011779	srrt	73	87.846	ENSHBUG00000002942	srrt	71	75.635	Haplochromis_burtoni
ENSTNIG00000011779	srrt	100	61.185	ENSHGLG00000008344	Srrt	89	69.767	Heterocephalus_glaber_female
ENSTNIG00000011779	srrt	100	62.222	ENSHGLG00100018857	Srrt	89	70.299	Heterocephalus_glaber_male
ENSTNIG00000011779	srrt	99	53.560	ENSHCOG00000008904	-	72	52.941	Hippocampus_comes
ENSTNIG00000011779	srrt	100	73.494	ENSHCOG00000005403	srrt	74	72.932	Hippocampus_comes
ENSTNIG00000011779	srrt	100	65.538	ENSIPUG00000021150	srrt	74	65.441	Ictalurus_punctatus
ENSTNIG00000011779	srrt	72	73.013	ENSSTOG00000013776	SRRT	74	62.500	Ictidomys_tridecemlineatus
ENSTNIG00000011779	srrt	100	61.027	ENSJJAG00000010446	Srrt	89	70.940	Jaculus_jaculus
ENSTNIG00000011779	srrt	75	84.200	ENSKMAG00000013599	srrt	74	75.186	Kryptolebias_marmoratus
ENSTNIG00000011779	srrt	72	61.507	ENSKMAG00000008468	-	75	50.657	Kryptolebias_marmoratus
ENSTNIG00000011779	srrt	100	74.695	ENSLBEG00000016308	srrt	65	85.714	Labrus_bergylta
ENSTNIG00000011779	srrt	100	49.231	ENSLACG00000001089	SRRT	73	49.693	Latimeria_chalumnae
ENSTNIG00000011779	srrt	72	65.953	ENSLOCG00000013658	srrt	68	66.809	Lepisosteus_oculatus
ENSTNIG00000011779	srrt	72	72.973	ENSLAFG00000007725	SRRT	74	63.323	Loxodonta_africana
ENSTNIG00000011779	srrt	100	61.411	ENSMFAG00000033745	SRRT	78	61.045	Macaca_fascicularis
ENSTNIG00000011779	srrt	100	61.286	ENSMMUG00000021255	SRRT	74	62.236	Macaca_mulatta
ENSTNIG00000011779	srrt	100	62.760	ENSMNEG00000041864	SRRT	76	61.045	Macaca_nemestrina
ENSTNIG00000011779	srrt	100	61.411	ENSMLEG00000029479	SRRT	76	61.045	Mandrillus_leucophaeus
ENSTNIG00000011779	srrt	73	88.085	ENSMAMG00000014311	srrt	74	78.861	Mastacembelus_armatus
ENSTNIG00000011779	srrt	72	64.632	ENSMAMG00000010681	-	75	54.641	Mastacembelus_armatus
ENSTNIG00000011779	srrt	73	87.633	ENSMZEG00005016135	srrt	71	75.486	Maylandia_zebra
ENSTNIG00000011779	srrt	72	64.000	ENSMZEG00005028002	-	75	51.542	Maylandia_zebra
ENSTNIG00000011779	srrt	72	72.557	ENSMAUG00000011386	Srrt	89	69.958	Mesocricetus_auratus
ENSTNIG00000011779	srrt	72	74.310	ENSMICG00000009471	SRRT	76	61.019	Microcebus_murinus
ENSTNIG00000011779	srrt	72	72.765	ENSMOCG00000001971	Srrt	89	69.375	Microtus_ochrogaster
ENSTNIG00000011779	srrt	100	54.265	ENSMMOG00000011137	-	78	52.243	Mola_mola
ENSTNIG00000011779	srrt	100	74.769	ENSMMOG00000016399	srrt	73	72.948	Mola_mola
ENSTNIG00000011779	srrt	72	70.478	ENSMODG00000004862	SRRT	89	69.937	Monodelphis_domestica
ENSTNIG00000011779	srrt	81	47.467	ENSMALG00000005567	-	84	48.739	Monopterus_albus
ENSTNIG00000011779	srrt	100	72.429	ENSMALG00000018604	srrt	78	72.321	Monopterus_albus
ENSTNIG00000011779	srrt	72	74.098	MGP_CAROLIEiJ_G0027870	Srrt	99	69.853	Mus_caroli
ENSTNIG00000011779	srrt	72	74.098	ENSMUSG00000037364	Srrt	99	69.853	Mus_musculus
ENSTNIG00000011779	srrt	72	74.098	MGP_PahariEiJ_G0024456	Srrt	99	69.853	Mus_pahari
ENSTNIG00000011779	srrt	72	74.098	MGP_SPRETEiJ_G0028875	Srrt	99	69.853	Mus_spretus
ENSTNIG00000011779	srrt	100	61.997	ENSMPUG00000015839	SRRT	74	62.215	Mustela_putorius_furo
ENSTNIG00000011779	srrt	100	60.954	ENSMLUG00000009975	SRRT	74	62.064	Myotis_lucifugus
ENSTNIG00000011779	srrt	72	72.765	ENSNGAG00000023715	Srrt	89	62.006	Nannospalax_galili
ENSTNIG00000011779	srrt	73	86.538	ENSNBRG00000019100	srrt	74	72.156	Neolamprologus_brichardi
ENSTNIG00000011779	srrt	100	55.556	ENSNLEG00000011987	SRRT	77	54.628	Nomascus_leucogenys
ENSTNIG00000011779	srrt	100	53.272	ENSMEUG00000011941	SRRT	74	53.221	Notamacropus_eugenii
ENSTNIG00000011779	srrt	65	67.376	ENSOPRG00000002502	-	51	66.667	Ochotona_princeps
ENSTNIG00000011779	srrt	72	73.885	ENSODEG00000016856	SRRT	89	70.513	Octodon_degus
ENSTNIG00000011779	srrt	72	65.063	ENSONIG00000016080	-	74	53.079	Oreochromis_niloticus
ENSTNIG00000011779	srrt	73	87.420	ENSONIG00000004242	srrt	75	72.700	Oreochromis_niloticus
ENSTNIG00000011779	srrt	100	75.898	ENSORLG00000008120	srrt	74	74.850	Oryzias_latipes
ENSTNIG00000011779	srrt	100	75.000	ENSORLG00020003058	srrt	74	74.701	Oryzias_latipes_hni
ENSTNIG00000011779	srrt	100	75.599	ENSORLG00015008062	srrt	74	74.551	Oryzias_latipes_hsok
ENSTNIG00000011779	srrt	100	76.198	ENSOMEG00000003155	srrt	67	86.170	Oryzias_melastigma
ENSTNIG00000011779	srrt	100	55.573	ENSOMEG00000006963	-	74	54.009	Oryzias_melastigma
ENSTNIG00000011779	srrt	100	61.161	ENSOGAG00000017242	SRRT	74	62.367	Otolemur_garnettii
ENSTNIG00000011779	srrt	100	61.194	ENSOARG00000015645	SRRT	74	62.348	Ovis_aries
ENSTNIG00000011779	srrt	100	61.654	ENSPPAG00000041090	SRRT	74	62.462	Pan_paniscus
ENSTNIG00000011779	srrt	100	61.677	ENSPPRG00000009557	SRRT	74	61.738	Panthera_pardus
ENSTNIG00000011779	srrt	100	61.550	ENSPTIG00000014355	SRRT	74	62.064	Panthera_tigris_altaica
ENSTNIG00000011779	srrt	100	61.654	ENSPTRG00000019511	SRRT	78	59.851	Pan_troglodytes
ENSTNIG00000011779	srrt	100	60.561	ENSPANG00000020763	SRRT	75	61.045	Papio_anubis
ENSTNIG00000011779	srrt	100	66.052	ENSPKIG00000022212	-	73	66.052	Paramormyrops_kingsleyae
ENSTNIG00000011779	srrt	100	67.121	ENSPKIG00000005434	srrt	74	68.182	Paramormyrops_kingsleyae
ENSTNIG00000011779	srrt	72	72.708	ENSPSIG00000016311	SRRT	74	60.426	Pelodiscus_sinensis
ENSTNIG00000011779	srrt	84	83.857	ENSPMGG00000002841	srrt	73	69.102	Periophthalmus_magnuspinnatus
ENSTNIG00000011779	srrt	72	74.098	ENSPEMG00000010834	Srrt	89	70.513	Peromyscus_maniculatus_bairdii
ENSTNIG00000011779	srrt	100	52.402	ENSPMAG00000009614	-	74	50.975	Petromyzon_marinus
ENSTNIG00000011779	srrt	72	73.305	ENSPCIG00000000816	SRRT	74	62.273	Phascolarctos_cinereus
ENSTNIG00000011779	srrt	73	85.319	ENSPFOG00000005704	srrt	74	76.347	Poecilia_formosa
ENSTNIG00000011779	srrt	72	60.842	ENSPFOG00000016554	-	73	52.896	Poecilia_formosa
ENSTNIG00000011779	srrt	100	51.290	ENSPLAG00000004526	-	73	52.214	Poecilia_latipinna
ENSTNIG00000011779	srrt	100	70.963	ENSPLAG00000021992	srrt	74	75.407	Poecilia_latipinna
ENSTNIG00000011779	srrt	67	60.739	ENSPMEG00000001520	-	72	51.975	Poecilia_mexicana
ENSTNIG00000011779	srrt	77	92.000	ENSPMEG00000001182	srrt	74	76.162	Poecilia_mexicana
ENSTNIG00000011779	srrt	100	75.749	ENSPREG00000022308	srrt	74	76.048	Poecilia_reticulata
ENSTNIG00000011779	srrt	100	49.775	ENSPPYG00000017432	SRRT	72	64.968	Pongo_abelii
ENSTNIG00000011779	srrt	100	60.266	ENSPCAG00000001621	SRRT	74	60.570	Procavia_capensis
ENSTNIG00000011779	srrt	100	62.575	ENSPCOG00000025751	SRRT	74	62.290	Propithecus_coquereli
ENSTNIG00000011779	srrt	100	55.376	ENSPVAG00000000834	SRRT	95	56.449	Pteropus_vampyrus
ENSTNIG00000011779	srrt	73	87.633	ENSPNYG00000018710	srrt	74	75.486	Pundamilia_nyererei
ENSTNIG00000011779	srrt	75	60.896	ENSPNAG00000010629	srrt	74	55.789	Pygocentrus_nattereri
ENSTNIG00000011779	srrt	72	63.866	ENSRNOG00000048277	AABR07035787.1	92	63.002	Rattus_norvegicus
ENSTNIG00000011779	srrt	100	61.286	ENSRBIG00000035718	SRRT	76	61.045	Rhinopithecus_bieti
ENSTNIG00000011779	srrt	100	61.286	ENSRROG00000030622	SRRT	76	61.045	Rhinopithecus_roxellana
ENSTNIG00000011779	srrt	100	61.596	ENSSBOG00000033570	SRRT	75	62.310	Saimiri_boliviensis_boliviensis
ENSTNIG00000011779	srrt	97	61.622	ENSSHAG00000007349	-	99	62.090	Sarcophilus_harrisii
ENSTNIG00000011779	srrt	100	69.231	ENSSFOG00015017293	srrt	74	70.134	Scleropages_formosus
ENSTNIG00000011779	srrt	100	77.027	ENSSMAG00000015342	srrt	74	75.449	Scophthalmus_maximus
ENSTNIG00000011779	srrt	72	61.814	ENSSMAG00000018195	-	76	53.588	Scophthalmus_maximus
ENSTNIG00000011779	srrt	73	53.074	ENSSDUG00000002051	-	93	52.500	Seriola_dumerili
ENSTNIG00000011779	srrt	73	88.936	ENSSDUG00000012049	srrt	71	80.240	Seriola_dumerili
ENSTNIG00000011779	srrt	86	87.420	ENSSLDG00000017477	srrt	64	87.366	Seriola_lalandi_dorsalis
ENSTNIG00000011779	srrt	72	55.485	ENSSPAG00000018943	-	93	55.696	Stegastes_partitus
ENSTNIG00000011779	srrt	73	89.765	ENSSPAG00000005665	srrt	73	79.254	Stegastes_partitus
ENSTNIG00000011779	srrt	69	70.806	ENSSSCG00000024789	SRRT	78	59.174	Sus_scrofa
ENSTNIG00000011779	srrt	96	52.464	ENSTRUG00000000023	-	71	50.399	Takifugu_rubripes
ENSTNIG00000011779	srrt	100	86.364	ENSTRUG00000016075	srrt	74	88.369	Takifugu_rubripes
ENSTNIG00000011779	srrt	100	61.218	ENSTTRG00000011104	SRRT	74	62.215	Tursiops_truncatus
ENSTNIG00000011779	srrt	100	62.170	ENSUAMG00000027997	SRRT	76	62.367	Ursus_americanus
ENSTNIG00000011779	srrt	100	61.848	ENSUMAG00000011295	SRRT	74	62.367	Ursus_maritimus
ENSTNIG00000011779	srrt	100	61.550	ENSVVUG00000023572	SRRT	74	62.519	Vulpes_vulpes
ENSTNIG00000011779	srrt	73	64.938	ENSXETG00000025124	srrt	53	65.953	Xenopus_tropicalis
ENSTNIG00000011779	srrt	73	49.895	ENSXCOG00000013105	-	91	50.213	Xiphophorus_couchianus
ENSTNIG00000011779	srrt	82	83.932	ENSXMAG00000007627	srrt	74	75.862	Xiphophorus_maculatus
ENSTNIG00000011779	srrt	100	52.761	ENSXMAG00000002090	-	73	53.528	Xiphophorus_maculatus