EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000012186 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 5122 bases
Position: chr1:18479413-18484534
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000015150	RRM_1	PF00076.22	5e-61	1	4
ENSTNIP00000015150	RRM_1	PF00076.22	5e-61	2	4
ENSTNIP00000015150	RRM_1	PF00076.22	5e-61	3	4
ENSTNIP00000015150	RRM_1	PF00076.22	5e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000015354	-	1818	-	ENSTNIP00000015150	606 (aa)	-	H3D3R2

Gene Model

Click here to download ENSTNIG00000012186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000012186's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000012186	ncl	57	32.653	ENSTNIG00000013307	pabpc1a	56	32.283

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000012186	ncl	62	84.000	ENSAPOG00000023888	ncl	56	83.957	Acanthochromis_polyacanthus
ENSTNIG00000012186	ncl	65	42.615	ENSAPOG00000014534	-	64	42.857	Acanthochromis_polyacanthus
ENSTNIG00000012186	ncl	78	74.734	ENSACIG00000013234	ncl	62	74.866	Amphilophus_citrinellus
ENSTNIG00000012186	ncl	65	42.579	ENSAOCG00000014792	-	58	42.553	Amphiprion_ocellaris
ENSTNIG00000012186	ncl	65	42.822	ENSAPEG00000013612	-	58	42.819	Amphiprion_percula
ENSTNIG00000012186	ncl	62	45.844	ENSATEG00000019862	-	81	45.333	Anabas_testudineus
ENSTNIG00000012186	ncl	75	76.407	ENSATEG00000013343	ncl	53	83.155	Anabas_testudineus
ENSTNIG00000012186	ncl	62	59.896	ENSACAG00000001006	-	50	60.656	Anolis_carolinensis
ENSTNIG00000012186	ncl	50	72.876	ENSACLG00000026031	ncl	85	73.026	Astatotilapia_calliptera
ENSTNIG00000012186	ncl	63	67.506	ENSAMXG00000001647	ncl	82	71.895	Astyanax_mexicanus
ENSTNIG00000012186	ncl	58	43.251	ENSCHIG00000012665	-	61	41.624	Capra_hircus
ENSTNIG00000012186	ncl	54	45.349	ENSCHIG00000003401	-	52	47.845	Capra_hircus
ENSTNIG00000012186	ncl	82	50.101	ENSCPBG00000016444	-	57	57.326	Chrysemys_picta_bellii
ENSTNIG00000012186	ncl	62	79.894	ENSCSEG00000015089	ncl	55	80.886	Cynoglossus_semilaevis
ENSTNIG00000012186	ncl	69	70.142	ENSDARG00000002710	ncl	83	74.919	Danio_rerio
ENSTNIG00000012186	ncl	59	48.352	ENSDNOG00000040257	-	60	48.343	Dasypus_novemcinctus
ENSTNIG00000012186	ncl	93	62.887	ENSELUG00000006033	ncl	58	73.333	Esox_lucius
ENSTNIG00000012186	ncl	62	50.789	ENSELUG00000022826	-	78	50.411	Esox_lucius
ENSTNIG00000012186	ncl	62	57.292	ENSFALG00000007592	-	54	56.201	Ficedula_albicollis
ENSTNIG00000012186	ncl	84	76.000	ENSFHEG00000018000	ncl	55	76.190	Fundulus_heteroclitus
ENSTNIG00000012186	ncl	63	69.010	ENSGMOG00000001341	ncl	57	69.613	Gadus_morhua
ENSTNIG00000012186	ncl	62	58.225	ENSGALG00000032930	NCL	52	58.038	Gallus_gallus
ENSTNIG00000012186	ncl	97	65.655	ENSGACG00000008970	ncl	74	71.358	Gasterosteus_aculeatus
ENSTNIG00000012186	ncl	61	76.075	ENSHBUG00000006869	ncl	51	76.257	Haplochromis_burtoni
ENSTNIG00000012186	ncl	77	80.319	ENSHCOG00000010234	ncl	52	80.533	Hippocampus_comes
ENSTNIG00000012186	ncl	59	73.856	ENSIPUG00000024556	ncl	79	74.671	Ictalurus_punctatus
ENSTNIG00000012186	ncl	69	75.418	ENSKMAG00000008111	ncl	51	80.447	Kryptolebias_marmoratus
ENSTNIG00000012186	ncl	64	44.279	ENSLBEG00000007915	-	63	45.040	Labrus_bergylta
ENSTNIG00000012186	ncl	60	43.915	ENSLBEG00000014278	-	80	44.444	Labrus_bergylta
ENSTNIG00000012186	ncl	69	62.175	ENSLACG00000009328	ncl	54	67.222	Latimeria_chalumnae
ENSTNIG00000012186	ncl	62	53.704	ENSLACG00000022167	-	76	55.153	Latimeria_chalumnae
ENSTNIG00000012186	ncl	59	67.409	ENSLOCG00000004828	ncl	52	67.877	Lepisosteus_oculatus
ENSTNIG00000012186	ncl	75	73.448	ENSMAMG00000002086	ncl	54	79.750	Mastacembelus_armatus
ENSTNIG00000012186	ncl	64	42.365	ENSMAMG00000003479	-	67	42.204	Mastacembelus_armatus
ENSTNIG00000012186	ncl	64	74.300	ENSMZEG00005017438	ncl	54	74.016	Maylandia_zebra
ENSTNIG00000012186	ncl	60	57.838	ENSMGAG00000008147	-	90	55.784	Meleagris_gallopavo
ENSTNIG00000012186	ncl	51	88.235	ENSMMOG00000008553	ncl	85	88.487	Mola_mola
ENSTNIG00000012186	ncl	51	44.013	ENSMPUG00000001663	-	57	44.013	Mustela_putorius_furo
ENSTNIG00000012186	ncl	63	35.677	ENSONIG00000010631	-	92	37.535	Oreochromis_niloticus
ENSTNIG00000012186	ncl	69	71.021	ENSONIG00000012508	ncl	59	71.599	Oreochromis_niloticus
ENSTNIG00000012186	ncl	64	34.853	ENSORLG00000004645	-	79	37.432	Oryzias_latipes
ENSTNIG00000012186	ncl	64	34.684	ENSORLG00020003497	-	71	37.432	Oryzias_latipes_hni
ENSTNIG00000012186	ncl	61	79.739	ENSORLG00015013815	ncl	88	79.934	Oryzias_latipes_hsok
ENSTNIG00000012186	ncl	64	35.443	ENSORLG00015006613	-	74	36.757	Oryzias_latipes_hsok
ENSTNIG00000012186	ncl	64	36.750	ENSOMEG00000015864	-	79	37.602	Oryzias_melastigma
ENSTNIG00000012186	ncl	70	70.686	ENSPKIG00000002604	ncl	51	75.766	Paramormyrops_kingsleyae
ENSTNIG00000012186	ncl	59	79.153	ENSPMGG00000004709	ncl	89	79.344	Periophthalmus_magnuspinnatus
ENSTNIG00000012186	ncl	89	71.706	ENSPFOG00000024205	ncl	51	76.579	Poecilia_formosa
ENSTNIG00000012186	ncl	89	72.294	ENSPMEG00000006000	ncl	54	76.515	Poecilia_mexicana
ENSTNIG00000012186	ncl	61	76.075	ENSPNYG00000020494	ncl	51	76.257	Pundamilia_nyererei
ENSTNIG00000012186	ncl	62	53.525	ENSSHAG00000002702	-	56	54.496	Sarcophilus_harrisii
ENSTNIG00000012186	ncl	54	44.848	ENSSFOG00015013153	-	78	45.806	Scleropages_formosus
ENSTNIG00000012186	ncl	78	76.596	ENSSFOG00015008583	ncl	56	77.437	Scleropages_formosus
ENSTNIG00000012186	ncl	69	77.725	ENSSMAG00000021241	ncl	54	82.181	Scophthalmus_maximus
ENSTNIG00000012186	ncl	63	44.975	ENSSMAG00000007582	-	59	45.405	Scophthalmus_maximus
ENSTNIG00000012186	ncl	77	77.962	ENSSDUG00000006128	ncl	86	82.447	Seriola_dumerili
ENSTNIG00000012186	ncl	64	42.963	ENSSDUG00000010922	-	68	43.767	Seriola_dumerili
ENSTNIG00000012186	ncl	64	42.680	ENSSLDG00000015784	-	62	43.700	Seriola_lalandi_dorsalis
ENSTNIG00000012186	ncl	78	50.203	ENSSPUG00000008244	-	57	59.151	Sphenodon_punctatus
ENSTNIG00000012186	ncl	64	43.719	ENSSPAG00000001859	-	59	43.514	Stegastes_partitus
ENSTNIG00000012186	ncl	59	84.043	ENSSPAG00000002637	ncl	86	84.286	Stegastes_partitus
ENSTNIG00000012186	ncl	62	57.772	ENSTGUG00000009782	-	58	58.743	Taeniopygia_guttata
ENSTNIG00000012186	ncl	74	56.061	ENSXETG00000009517	ncl	51	63.712	Xenopus_tropicalis
ENSTNIG00000012186	ncl	61	39.474	ENSXCOG00000007369	-	86	39.024	Xiphophorus_couchianus
ENSTNIG00000012186	ncl	65	47.910	ENSXCOG00000003524	ncl	88	58.410	Xiphophorus_couchianus
ENSTNIG00000012186	ncl	88	79.200	ENSXMAG00000005914	ncl	63	76.515	Xiphophorus_maculatus