EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000012398 (Gene tree)
Gene ID: -
Gene Symbol: larp1b
Alias: fc76b04|wu:fc76b04
Full Name: La ribonucleoprotein domain family%2C member 1B
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 11534 bases
Position: chr10:12760377-12771910
Accession: ZDB-GENE-030131-4154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000015366	La	PF05383.17	3.6e-21	1	1
ENSTNIP00000015367	La	PF05383.17	4.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000015572	-	2889	-	ENSTNIP00000015367	963 (aa)	-	H3D4C9
ENSTNIT00000015571	-	2658	-	ENSTNIP00000015366	886 (aa)	-	H3D4C8

Gene Model

Click here to download ENSTNIG00000012398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000012398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000012398	larp1b	99	53.353	ENSG00000138709	LARP1B	99	51.884	Homo_sapiens
ENSTNIG00000012398	larp1b	100	77.586	ENSAPOG00000020101	larp1b	91	76.732	Acanthochromis_polyacanthus
ENSTNIG00000012398	larp1b	61	48.161	ENSAMEG00000002748	LARP1B	99	47.010	Ailuropoda_melanoleuca
ENSTNIG00000012398	larp1b	100	73.815	ENSACIG00000023890	larp1b	89	73.599	Amphilophus_citrinellus
ENSTNIG00000012398	larp1b	95	71.298	ENSAOCG00000014268	larp1b	95	71.056	Amphiprion_ocellaris
ENSTNIG00000012398	larp1b	99	77.031	ENSAPEG00000004126	larp1b	87	80.734	Amphiprion_percula
ENSTNIG00000012398	larp1b	100	75.752	ENSATEG00000017849	larp1b	90	75.803	Anabas_testudineus
ENSTNIG00000012398	larp1b	96	53.774	ENSAPLG00000010129	LARP1B	100	53.546	Anas_platyrhynchos
ENSTNIG00000012398	larp1b	96	53.998	ENSACAG00000011338	LARP1B	83	64.536	Anolis_carolinensis
ENSTNIG00000012398	larp1b	86	46.503	ENSANAG00000034618	LARP1B	76	49.648	Aotus_nancymaae
ENSTNIG00000012398	larp1b	100	72.545	ENSACLG00000011948	larp1b	87	74.174	Astatotilapia_calliptera
ENSTNIG00000012398	larp1b	97	60.284	ENSAMXG00000006805	larp1b	84	62.291	Astyanax_mexicanus
ENSTNIG00000012398	larp1b	99	53.931	ENSBTAG00000012135	LARP1B	96	46.737	Bos_taurus
ENSTNIG00000012398	larp1b	94	54.077	ENSCJAG00000003338	LARP1B	98	42.982	Callithrix_jacchus
ENSTNIG00000012398	larp1b	91	60.628	ENSCAFG00000003831	LARP1B	100	60.240	Canis_familiaris
ENSTNIG00000012398	larp1b	94	55.330	ENSCAFG00020018899	LARP1B	98	53.710	Canis_lupus_dingo
ENSTNIG00000012398	larp1b	94	54.729	ENSCHIG00000023144	LARP1B	95	53.725	Capra_hircus
ENSTNIG00000012398	larp1b	94	53.814	ENSCCAG00000021948	LARP1B	97	53.079	Cebus_capucinus
ENSTNIG00000012398	larp1b	94	53.609	ENSCATG00000013541	LARP1B	96	52.710	Cercocebus_atys
ENSTNIG00000012398	larp1b	94	54.180	ENSCSAG00000003582	LARP1B	97	53.326	Chlorocebus_sabaeus
ENSTNIG00000012398	larp1b	89	51.627	ENSCHOG00000005354	LARP1B	77	57.588	Choloepus_hoffmanni
ENSTNIG00000012398	larp1b	99	54.555	ENSCPBG00000017480	LARP1B	89	54.793	Chrysemys_picta_bellii
ENSTNIG00000012398	larp1b	94	53.747	ENSCANG00000026958	LARP1B	96	56.009	Colobus_angolensis_palliatus
ENSTNIG00000012398	larp1b	99	75.067	ENSCSEG00000013519	larp1b	88	73.579	Cynoglossus_semilaevis
ENSTNIG00000012398	larp1b	99	75.881	ENSCVAG00000005046	larp1b	90	71.172	Cyprinodon_variegatus
ENSTNIG00000012398	larp1b	98	65.005	ENSDARG00000061169	larp1b	85	63.301	Danio_rerio
ENSTNIG00000012398	larp1b	56	47.928	ENSDNOG00000018765	-	97	47.243	Dasypus_novemcinctus
ENSTNIG00000012398	larp1b	70	54.819	ENSETEG00000012497	LARP1B	72	54.491	Echinops_telfairi
ENSTNIG00000012398	larp1b	93	46.290	ENSEBUG00000003668	larp1b	85	51.093	Eptatretus_burgeri
ENSTNIG00000012398	larp1b	94	54.915	ENSEASG00005018106	LARP1B	98	53.710	Equus_asinus_asinus
ENSTNIG00000012398	larp1b	99	54.286	ENSECAG00000001088	LARP1B	84	54.082	Equus_caballus
ENSTNIG00000012398	larp1b	74	64.725	ENSELUG00000023774	larp1b	91	61.064	Esox_lucius
ENSTNIG00000012398	larp1b	57	49.104	ENSFCAG00000014650	-	97	47.772	Felis_catus
ENSTNIG00000012398	larp1b	94	51.323	ENSFALG00000008098	LARP1B	96	52.119	Ficedula_albicollis
ENSTNIG00000012398	larp1b	93	81.872	ENSFHEG00000010264	larp1b	87	74.434	Fundulus_heteroclitus
ENSTNIG00000012398	larp1b	88	76.119	ENSGMOG00000005207	larp1b	76	76.493	Gadus_morhua
ENSTNIG00000012398	larp1b	99	52.289	ENSGALG00000010207	LARP1B	90	51.972	Gallus_gallus
ENSTNIG00000012398	larp1b	88	83.084	ENSGAFG00000012012	larp1b	93	73.793	Gambusia_affinis
ENSTNIG00000012398	larp1b	100	71.956	ENSGACG00000004609	larp1b	88	72.156	Gasterosteus_aculeatus
ENSTNIG00000012398	larp1b	99	54.711	ENSGAGG00000017209	LARP1B	89	54.995	Gopherus_agassizii
ENSTNIG00000012398	larp1b	94	54.304	ENSGGOG00000015900	LARP1B	96	53.079	Gorilla_gorilla
ENSTNIG00000012398	larp1b	100	74.356	ENSHBUG00000009730	larp1b	90	74.567	Haplochromis_burtoni
ENSTNIG00000012398	larp1b	73	79.970	ENSHCOG00000000918	larp1b	95	79.821	Hippocampus_comes
ENSTNIG00000012398	larp1b	98	63.538	ENSIPUG00000012138	larp1b	87	60.841	Ictalurus_punctatus
ENSTNIG00000012398	larp1b	98	75.685	ENSKMAG00000011589	larp1b	92	74.836	Kryptolebias_marmoratus
ENSTNIG00000012398	larp1b	100	76.300	ENSLBEG00000005655	larp1b	89	76.056	Labrus_bergylta
ENSTNIG00000012398	larp1b	91	67.064	ENSLACG00000015247	LARP1B	99	45.662	Latimeria_chalumnae
ENSTNIG00000012398	larp1b	97	58.299	ENSLOCG00000010684	larp1b	94	59.754	Lepisosteus_oculatus
ENSTNIG00000012398	larp1b	94	54.565	ENSMFAG00000002218	LARP1B	96	53.560	Macaca_fascicularis
ENSTNIG00000012398	larp1b	94	54.565	ENSMMUG00000021347	LARP1B	96	53.560	Macaca_mulatta
ENSTNIG00000012398	larp1b	89	53.644	ENSMNEG00000030406	LARP1B	81	60.756	Macaca_nemestrina
ENSTNIG00000012398	larp1b	89	56.078	ENSMLEG00000009306	LARP1B	77	62.554	Mandrillus_leucophaeus
ENSTNIG00000012398	larp1b	97	81.845	ENSMAMG00000000081	larp1b	92	76.521	Mastacembelus_armatus
ENSTNIG00000012398	larp1b	74	80.781	ENSMZEG00005002545	larp1b	88	77.966	Maylandia_zebra
ENSTNIG00000012398	larp1b	94	50.434	ENSMGAG00000004809	LARP1B	99	50.323	Meleagris_gallopavo
ENSTNIG00000012398	larp1b	94	56.344	ENSMICG00000036111	LARP1B	96	55.592	Microcebus_murinus
ENSTNIG00000012398	larp1b	99	54.264	ENSMODG00000012300	LARP1B	76	63.845	Monodelphis_domestica
ENSTNIG00000012398	larp1b	100	77.333	ENSMALG00000003638	larp1b	91	74.573	Monopterus_albus
ENSTNIG00000012398	larp1b	99	54.425	ENSMPUG00000017365	LARP1B	84	54.024	Mustela_putorius_furo
ENSTNIG00000012398	larp1b	96	54.421	ENSMLUG00000010229	LARP1B	99	53.340	Myotis_lucifugus
ENSTNIG00000012398	larp1b	85	82.667	ENSNBRG00000023846	larp1b	79	82.667	Neolamprologus_brichardi
ENSTNIG00000012398	larp1b	94	54.034	ENSNLEG00000013819	LARP1B	97	53.241	Nomascus_leucogenys
ENSTNIG00000012398	larp1b	70	58.610	ENSMEUG00000010308	LARP1B	73	59.407	Notamacropus_eugenii
ENSTNIG00000012398	larp1b	77	57.505	ENSOPRG00000005478	LARP1B	76	54.533	Ochotona_princeps
ENSTNIG00000012398	larp1b	100	71.856	ENSONIG00000012386	larp1b	99	72.854	Oreochromis_niloticus
ENSTNIG00000012398	larp1b	94	53.978	ENSOCUG00000013330	LARP1B	95	53.391	Oryctolagus_cuniculus
ENSTNIG00000012398	larp1b	92	79.764	ENSORLG00000017954	larp1b	88	73.604	Oryzias_latipes
ENSTNIG00000012398	larp1b	93	80.207	ENSORLG00020013081	larp1b	87	72.773	Oryzias_latipes_hni
ENSTNIG00000012398	larp1b	92	79.911	ENSORLG00015009580	larp1b	88	73.713	Oryzias_latipes_hsok
ENSTNIG00000012398	larp1b	93	81.037	ENSOMEG00000004210	larp1b	89	73.218	Oryzias_melastigma
ENSTNIG00000012398	larp1b	95	54.390	ENSOGAG00000005771	LARP1B	100	54.691	Otolemur_garnettii
ENSTNIG00000012398	larp1b	94	54.401	ENSOARG00000015300	LARP1B	96	53.403	Ovis_aries
ENSTNIG00000012398	larp1b	94	54.516	ENSPPAG00000030439	LARP1B	96	53.291	Pan_paniscus
ENSTNIG00000012398	larp1b	57	48.485	ENSPPRG00000002743	-	98	47.163	Panthera_pardus
ENSTNIG00000012398	larp1b	57	48.485	ENSPTIG00000011225	LARP1B	98	47.163	Panthera_tigris_altaica
ENSTNIG00000012398	larp1b	94	54.516	ENSPTRG00000016437	LARP1B	96	53.291	Pan_troglodytes
ENSTNIG00000012398	larp1b	94	54.671	ENSPANG00000012488	LARP1B	96	53.666	Papio_anubis
ENSTNIG00000012398	larp1b	96	56.215	ENSPKIG00000014360	larp1b	94	57.647	Paramormyrops_kingsleyae
ENSTNIG00000012398	larp1b	99	55.399	ENSPSIG00000012885	LARP1B	99	54.949	Pelodiscus_sinensis
ENSTNIG00000012398	larp1b	74	78.306	ENSPMGG00000007207	larp1b	83	75.668	Periophthalmus_magnuspinnatus
ENSTNIG00000012398	larp1b	78	56.792	ENSPMAG00000002700	larp1b	96	49.649	Petromyzon_marinus
ENSTNIG00000012398	larp1b	93	55.699	ENSPCIG00000026516	LARP1B	93	63.662	Phascolarctos_cinereus
ENSTNIG00000012398	larp1b	56	77.538	ENSPFOG00000022837	-	87	67.707	Poecilia_formosa
ENSTNIG00000012398	larp1b	93	80.603	ENSPFOG00000019519	larp1b	87	74.004	Poecilia_formosa
ENSTNIG00000012398	larp1b	94	82.934	ENSPLAG00000007115	larp1b	80	83.929	Poecilia_latipinna
ENSTNIG00000012398	larp1b	99	75.708	ENSPMEG00000001224	larp1b	89	76.464	Poecilia_mexicana
ENSTNIG00000012398	larp1b	94	53.029	ENSPCAG00000007546	LARP1B	96	52.366	Procavia_capensis
ENSTNIG00000012398	larp1b	83	71.930	ENSPCOG00000021874	LARP1B	95	71.930	Propithecus_coquereli
ENSTNIG00000012398	larp1b	94	52.070	ENSPVAG00000005373	LARP1B	96	51.683	Pteropus_vampyrus
ENSTNIG00000012398	larp1b	74	80.383	ENSPNYG00000017357	larp1b	89	78.541	Pundamilia_nyererei
ENSTNIG00000012398	larp1b	97	63.430	ENSPNAG00000008823	larp1b	85	67.969	Pygocentrus_nattereri
ENSTNIG00000012398	larp1b	57	48.050	ENSRBIG00000039982	-	98	46.607	Rhinopithecus_bieti
ENSTNIG00000012398	larp1b	94	54.777	ENSRROG00000030771	LARP1B	96	53.887	Rhinopithecus_roxellana
ENSTNIG00000012398	larp1b	71	50.069	ENSSHAG00000014474	LARP1B	99	49.443	Sarcophilus_harrisii
ENSTNIG00000012398	larp1b	97	72.643	ENSSMAG00000006347	larp1b	93	75.731	Scophthalmus_maximus
ENSTNIG00000012398	larp1b	100	78.223	ENSSDUG00000004182	larp1b	89	76.973	Seriola_dumerili
ENSTNIG00000012398	larp1b	100	74.390	ENSSLDG00000014613	larp1b	86	78.378	Seriola_lalandi_dorsalis
ENSTNIG00000012398	larp1b	90	54.494	ENSSPUG00000011837	LARP1B	77	62.828	Sphenodon_punctatus
ENSTNIG00000012398	larp1b	100	74.155	ENSSPAG00000017772	larp1b	90	73.864	Stegastes_partitus
ENSTNIG00000012398	larp1b	99	53.503	ENSSSCG00000034280	LARP1B	98	77.011	Sus_scrofa
ENSTNIG00000012398	larp1b	73	63.268	ENSTGUG00000002098	-	80	63.418	Taeniopygia_guttata
ENSTNIG00000012398	larp1b	100	84.742	ENSTRUG00000005612	larp1b	90	84.632	Takifugu_rubripes
ENSTNIG00000012398	larp1b	65	61.409	ENSTBEG00000004177	LARP1B	65	61.333	Tupaia_belangeri
ENSTNIG00000012398	larp1b	85	54.737	ENSTTRG00000012984	LARP1B	78	58.060	Tursiops_truncatus
ENSTNIG00000012398	larp1b	94	55.508	ENSUMAG00000007373	LARP1B	95	54.634	Ursus_maritimus
ENSTNIG00000012398	larp1b	73	55.556	ENSVPAG00000007223	LARP1B	76	55.961	Vicugna_pacos
ENSTNIG00000012398	larp1b	94	56.324	ENSVVUG00000011307	LARP1B	99	55.716	Vulpes_vulpes
ENSTNIG00000012398	larp1b	99	49.949	ENSXETG00000022512	larp1b	91	49.645	Xenopus_tropicalis
ENSTNIG00000012398	larp1b	80	83.333	ENSXCOG00000004435	larp1b	75	83.333	Xiphophorus_couchianus
ENSTNIG00000012398	larp1b	93	82.866	ENSXMAG00000008150	larp1b	86	77.864	Xiphophorus_maculatus