EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000012783 (Gene tree)
Gene ID: -
Gene Symbol: nom1
Alias: si:ch211-266o5.1
Full Name: nucleolar protein with MIF4G domain 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 4419 bases
Position: chr6:4988546-4992964
Accession: ZDB-GENE-060503-321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000015756	MA3	PF02847.17	2.9e-21	1	1
ENSTNIP00000003068	MA3	PF02847.17	3e-21	1	1
ENSTNIP00000015756	MIF4G	PF02854.19	1.3e-14	1	1
ENSTNIP00000003068	MIF4G	PF02854.19	1.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000003451	-	2397	-	ENSTNIP00000003068	798 (aa)	-	H3C499
ENSTNIT00000015965	-	2337	-	ENSTNIP00000015756	778 (aa)	-	H3D5G7

Gene Model

Click here to download ENSTNIG00000012783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000012783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000012783	nom1	99	53.442	ENSG00000146909	NOM1	95	53.976	Homo_sapiens
ENSTNIG00000012783	nom1	67	82.129	ENSAPOG00000012073	nom1	98	69.822	Acanthochromis_polyacanthus
ENSTNIG00000012783	nom1	86	56.259	ENSAMEG00000001412	NOM1	96	57.797	Ailuropoda_melanoleuca
ENSTNIG00000012783	nom1	90	81.298	ENSACIG00000018050	nom1	97	70.375	Amphilophus_citrinellus
ENSTNIG00000012783	nom1	100	67.778	ENSAOCG00000006229	nom1	98	69.203	Amphiprion_ocellaris
ENSTNIG00000012783	nom1	68	80.863	ENSAPEG00000015994	nom1	98	69.212	Amphiprion_percula
ENSTNIG00000012783	nom1	100	71.731	ENSATEG00000005405	nom1	98	71.677	Anabas_testudineus
ENSTNIG00000012783	nom1	84	56.627	ENSAPLG00000006585	NOM1	100	57.078	Anas_platyrhynchos
ENSTNIG00000012783	nom1	83	54.857	ENSACAG00000011192	NOM1	89	53.675	Anolis_carolinensis
ENSTNIG00000012783	nom1	100	69.647	ENSACLG00000000033	nom1	98	68.970	Astatotilapia_calliptera
ENSTNIG00000012783	nom1	68	71.963	ENSAMXG00000041486	nom1	98	56.512	Astyanax_mexicanus
ENSTNIG00000012783	nom1	99	51.519	ENSBTAG00000016435	NOM1	95	50.305	Bos_taurus
ENSTNIG00000012783	nom1	99	52.174	ENSCJAG00000004336	NOM1	95	52.158	Callithrix_jacchus
ENSTNIG00000012783	nom1	56	39.880	ENSCAFG00000029845	-	72	47.568	Canis_familiaris
ENSTNIG00000012783	nom1	99	51.792	ENSCAFG00020005121	NOM1	82	56.067	Canis_lupus_dingo
ENSTNIG00000012783	nom1	99	51.266	ENSCHIG00000020102	NOM1	84	54.137	Capra_hircus
ENSTNIG00000012783	nom1	99	53.885	ENSTSYG00000000227	NOM1	94	53.325	Carlito_syrichta
ENSTNIG00000012783	nom1	66	66.987	ENSCAPG00000016273	NOM1	99	66.987	Cavia_aperea
ENSTNIG00000012783	nom1	99	51.617	ENSCPOG00000025538	NOM1	96	49.940	Cavia_porcellus
ENSTNIG00000012783	nom1	91	64.941	ENSCCAG00000014944	NOM1	98	65.352	Cebus_capucinus
ENSTNIG00000012783	nom1	89	54.937	ENSCLAG00000000267	NOM1	82	57.123	Chinchilla_lanigera
ENSTNIG00000012783	nom1	74	65.530	ENSCPBG00000018215	NOM1	75	57.817	Chrysemys_picta_bellii
ENSTNIG00000012783	nom1	89	35.775	ENSCING00000005248	-	95	37.236	Ciona_intestinalis
ENSTNIG00000012783	nom1	68	64.218	ENSCANG00000041984	NOM1	91	64.461	Colobus_angolensis_palliatus
ENSTNIG00000012783	nom1	86	57.980	ENSCGRG00001020293	Nom1	96	51.986	Cricetulus_griseus_chok1gshd
ENSTNIG00000012783	nom1	67	65.085	ENSCGRG00000005405	Nom1	98	65.085	Cricetulus_griseus_crigri
ENSTNIG00000012783	nom1	96	68.428	ENSCSEG00000000932	nom1	94	67.821	Cynoglossus_semilaevis
ENSTNIG00000012783	nom1	100	66.423	ENSCVAG00000007562	nom1	98	68.171	Cyprinodon_variegatus
ENSTNIG00000012783	nom1	100	60.656	ENSDARG00000060027	nom1	100	70.697	Danio_rerio
ENSTNIG00000012783	nom1	66	54.924	ENSDORG00000015682	Nom1	99	50.659	Dipodomys_ordii
ENSTNIG00000012783	nom1	68	37.798	FBgn0035336	CG9004	81	36.143	Drosophila_melanogaster
ENSTNIG00000012783	nom1	61	60.000	ENSETEG00000003104	NOM1	87	56.974	Echinops_telfairi
ENSTNIG00000012783	nom1	56	50.459	ENSEBUG00000010077	nom1	96	50.459	Eptatretus_burgeri
ENSTNIG00000012783	nom1	82	59.639	ENSEASG00005001489	NOM1	82	57.345	Equus_asinus_asinus
ENSTNIG00000012783	nom1	67	65.905	ENSECAG00000007596	NOM1	78	56.011	Equus_caballus
ENSTNIG00000012783	nom1	69	76.766	ENSELUG00000006266	nom1	98	65.248	Esox_lucius
ENSTNIG00000012783	nom1	85	56.232	ENSFCAG00000006467	NOM1	85	56.667	Felis_catus
ENSTNIG00000012783	nom1	88	57.857	ENSFALG00000006904	NOM1	99	58.561	Ficedula_albicollis
ENSTNIG00000012783	nom1	99	51.584	ENSFDAG00000016241	NOM1	97	51.589	Fukomys_damarensis
ENSTNIG00000012783	nom1	99	67.812	ENSFHEG00000015974	nom1	98	67.235	Fundulus_heteroclitus
ENSTNIG00000012783	nom1	100	57.973	ENSGMOG00000005129	nom1	100	59.181	Gadus_morhua
ENSTNIG00000012783	nom1	90	56.285	ENSGALG00000006437	NOM1	80	56.356	Gallus_gallus
ENSTNIG00000012783	nom1	100	69.051	ENSGAFG00000003211	nom1	98	68.873	Gambusia_affinis
ENSTNIG00000012783	nom1	87	57.143	ENSGAGG00000014347	NOM1	84	56.802	Gopherus_agassizii
ENSTNIG00000012783	nom1	66	65.962	ENSGGOG00000010920	NOM1	88	53.438	Gorilla_gorilla
ENSTNIG00000012783	nom1	100	69.785	ENSHBUG00000014616	nom1	98	69.866	Haplochromis_burtoni
ENSTNIG00000012783	nom1	99	53.894	ENSHGLG00000007392	NOM1	96	51.537	Heterocephalus_glaber_female
ENSTNIG00000012783	nom1	99	53.894	ENSHGLG00100014407	NOM1	96	65.924	Heterocephalus_glaber_male
ENSTNIG00000012783	nom1	67	70.209	ENSIPUG00000013980	nom1	98	57.971	Ictalurus_punctatus
ENSTNIG00000012783	nom1	71	63.129	ENSSTOG00000031736	NOM1	96	64.117	Ictidomys_tridecemlineatus
ENSTNIG00000012783	nom1	62	66.530	ENSJJAG00000011716	Nom1	98	66.530	Jaculus_jaculus
ENSTNIG00000012783	nom1	100	68.788	ENSLBEG00000009252	nom1	98	69.438	Labrus_bergylta
ENSTNIG00000012783	nom1	95	54.987	ENSLACG00000011777	NOM1	98	54.106	Latimeria_chalumnae
ENSTNIG00000012783	nom1	99	63.359	ENSLOCG00000012452	nom1	100	61.614	Lepisosteus_oculatus
ENSTNIG00000012783	nom1	99	49.000	ENSLAFG00000007119	NOM1	88	50.730	Loxodonta_africana
ENSTNIG00000012783	nom1	67	61.977	ENSMMUG00000039033	NOM1	95	49.762	Macaca_mulatta
ENSTNIG00000012783	nom1	67	65.209	ENSMLEG00000037062	NOM1	98	65.458	Mandrillus_leucophaeus
ENSTNIG00000012783	nom1	100	67.962	ENSMAMG00000004118	nom1	98	68.578	Mastacembelus_armatus
ENSTNIG00000012783	nom1	100	69.521	ENSMZEG00005000384	nom1	98	68.848	Maylandia_zebra
ENSTNIG00000012783	nom1	88	57.003	ENSMGAG00000005051	NOM1	99	58.406	Meleagris_gallopavo
ENSTNIG00000012783	nom1	99	53.125	ENSMAUG00000017988	Nom1	95	52.306	Mesocricetus_auratus
ENSTNIG00000012783	nom1	99	52.692	ENSMICG00000017531	NOM1	95	52.734	Microcebus_murinus
ENSTNIG00000012783	nom1	99	52.664	ENSMOCG00000015962	Nom1	95	52.970	Microtus_ochrogaster
ENSTNIG00000012783	nom1	100	69.745	ENSMMOG00000004419	nom1	97	69.734	Mola_mola
ENSTNIG00000012783	nom1	70	64.964	ENSMODG00000005177	NOM1	83	59.072	Monodelphis_domestica
ENSTNIG00000012783	nom1	94	69.624	ENSMALG00000008800	nom1	97	68.903	Monopterus_albus
ENSTNIG00000012783	nom1	99	52.091	MGP_CAROLIEiJ_G0027043	Nom1	94	50.484	Mus_caroli
ENSTNIG00000012783	nom1	99	52.605	ENSMUSG00000001569	Nom1	94	50.481	Mus_musculus
ENSTNIG00000012783	nom1	99	52.130	MGP_SPRETEiJ_G0028039	Nom1	94	51.322	Mus_spretus
ENSTNIG00000012783	nom1	86	55.360	ENSMPUG00000009745	NOM1	99	54.922	Mustela_putorius_furo
ENSTNIG00000012783	nom1	77	59.547	ENSMLUG00000009129	NOM1	92	63.538	Myotis_lucifugus
ENSTNIG00000012783	nom1	100	70.253	ENSNBRG00000016429	nom1	99	78.182	Neolamprologus_brichardi
ENSTNIG00000012783	nom1	69	63.303	ENSNLEG00000000238	NOM1	95	52.638	Nomascus_leucogenys
ENSTNIG00000012783	nom1	73	55.746	ENSMEUG00000001108	NOM1	71	56.295	Notamacropus_eugenii
ENSTNIG00000012783	nom1	56	55.814	ENSOPRG00000014676	NOM1	85	44.007	Ochotona_princeps
ENSTNIG00000012783	nom1	86	56.466	ENSODEG00000009399	NOM1	98	56.854	Octodon_degus
ENSTNIG00000012783	nom1	100	68.546	ENSONIG00000005958	nom1	100	68.883	Oreochromis_niloticus
ENSTNIG00000012783	nom1	59	65.217	ENSOANG00000006139	-	97	65.217	Ornithorhynchus_anatinus
ENSTNIG00000012783	nom1	99	44.911	ENSOCUG00000021448	-	98	45.256	Oryctolagus_cuniculus
ENSTNIG00000012783	nom1	99	54.650	ENSOCUG00000004071	-	91	56.345	Oryctolagus_cuniculus
ENSTNIG00000012783	nom1	100	67.754	ENSORLG00000010541	nom1	98	67.349	Oryzias_latipes
ENSTNIG00000012783	nom1	98	67.730	ENSORLG00020010789	nom1	99	67.137	Oryzias_latipes_hni
ENSTNIG00000012783	nom1	100	67.803	ENSORLG00015010475	nom1	99	67.009	Oryzias_latipes_hsok
ENSTNIG00000012783	nom1	100	66.547	ENSOMEG00000004219	nom1	98	67.107	Oryzias_melastigma
ENSTNIG00000012783	nom1	66	65.835	ENSOGAG00000001124	NOM1	89	63.971	Otolemur_garnettii
ENSTNIG00000012783	nom1	86	55.072	ENSOARG00000007261	NOM1	97	53.889	Ovis_aries
ENSTNIG00000012783	nom1	86	58.850	ENSPPAG00000041374	NOM1	95	53.679	Pan_paniscus
ENSTNIG00000012783	nom1	82	55.766	ENSPTIG00000013532	NOM1	97	55.724	Panthera_tigris_altaica
ENSTNIG00000012783	nom1	99	53.208	ENSPTRG00000019917	NOM1	95	52.392	Pan_troglodytes
ENSTNIG00000012783	nom1	99	53.184	ENSPANG00000007605	NOM1	95	53.061	Papio_anubis
ENSTNIG00000012783	nom1	100	60.223	ENSPKIG00000005825	nom1	98	59.495	Paramormyrops_kingsleyae
ENSTNIG00000012783	nom1	67	65.970	ENSPSIG00000017848	NOM1	90	64.457	Pelodiscus_sinensis
ENSTNIG00000012783	nom1	100	67.774	ENSPMGG00000002577	nom1	98	68.610	Periophthalmus_magnuspinnatus
ENSTNIG00000012783	nom1	99	54.351	ENSPEMG00000024180	Nom1	94	53.930	Peromyscus_maniculatus_bairdii
ENSTNIG00000012783	nom1	99	51.551	ENSPCIG00000027941	NOM1	81	56.140	Phascolarctos_cinereus
ENSTNIG00000012783	nom1	100	68.599	ENSPFOG00000015771	nom1	98	68.281	Poecilia_formosa
ENSTNIG00000012783	nom1	70	78.532	ENSPLAG00000007856	nom1	98	69.154	Poecilia_latipinna
ENSTNIG00000012783	nom1	100	68.820	ENSPMEG00000014155	nom1	98	69.068	Poecilia_mexicana
ENSTNIG00000012783	nom1	99	70.064	ENSPREG00000008850	nom1	98	69.240	Poecilia_reticulata
ENSTNIG00000012783	nom1	99	50.631	ENSPPYG00000018222	NOM1	94	50.663	Pongo_abelii
ENSTNIG00000012783	nom1	74	59.070	ENSPCAG00000000440	NOM1	74	59.070	Procavia_capensis
ENSTNIG00000012783	nom1	67	63.688	ENSPCOG00000015222	NOM1	99	63.447	Propithecus_coquereli
ENSTNIG00000012783	nom1	86	57.080	ENSPVAG00000014760	NOM1	95	51.222	Pteropus_vampyrus
ENSTNIG00000012783	nom1	100	69.395	ENSPNYG00000006975	nom1	98	78.889	Pundamilia_nyererei
ENSTNIG00000012783	nom1	70	68.603	ENSPNAG00000011085	nom1	98	55.606	Pygocentrus_nattereri
ENSTNIG00000012783	nom1	99	50.437	ENSRNOG00000048969	AABR07059041.1	99	49.939	Rattus_norvegicus
ENSTNIG00000012783	nom1	99	52.868	ENSRBIG00000037042	NOM1	95	50.348	Rhinopithecus_bieti
ENSTNIG00000012783	nom1	99	52.618	ENSRROG00000037293	NOM1	95	50.116	Rhinopithecus_roxellana
ENSTNIG00000012783	nom1	67	66.794	ENSSHAG00000017998	-	99	58.636	Sarcophilus_harrisii
ENSTNIG00000012783	nom1	53	61.743	ENSSHAG00000002835	-	99	62.077	Sarcophilus_harrisii
ENSTNIG00000012783	nom1	62	71.193	ENSSFOG00015003196	nom1	100	71.193	Scleropages_formosus
ENSTNIG00000012783	nom1	100	69.250	ENSSMAG00000011047	nom1	98	68.916	Scophthalmus_maximus
ENSTNIG00000012783	nom1	68	82.552	ENSSDUG00000006834	nom1	98	70.277	Seriola_dumerili
ENSTNIG00000012783	nom1	68	82.364	ENSSLDG00000021812	nom1	98	70.496	Seriola_lalandi_dorsalis
ENSTNIG00000012783	nom1	91	48.505	ENSSPUG00000002556	NOM1	90	68.571	Sphenodon_punctatus
ENSTNIG00000012783	nom1	68	82.364	ENSSPAG00000000953	nom1	98	69.393	Stegastes_partitus
ENSTNIG00000012783	nom1	90	55.866	ENSTGUG00000000702	-	99	54.707	Taeniopygia_guttata
ENSTNIG00000012783	nom1	100	80.127	ENSTRUG00000010239	nom1	98	80.704	Takifugu_rubripes
ENSTNIG00000012783	nom1	98	52.692	ENSTTRG00000009691	NOM1	80	57.310	Tursiops_truncatus
ENSTNIG00000012783	nom1	86	56.484	ENSUAMG00000025450	NOM1	84	55.735	Ursus_americanus
ENSTNIG00000012783	nom1	86	57.918	ENSUMAG00000014275	NOM1	99	56.241	Ursus_maritimus
ENSTNIG00000012783	nom1	90	55.878	ENSVVUG00000002608	NOM1	82	55.878	Vulpes_vulpes
ENSTNIG00000012783	nom1	90	55.858	ENSXETG00000021611	nom1	82	71.220	Xenopus_tropicalis
ENSTNIG00000012783	nom1	100	68.927	ENSXMAG00000002451	nom1	98	69.335	Xiphophorus_maculatus