EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000012998 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 21472 bases
Position: chr20:1369321-1390792
Accession: ZDB-GENE-121031-4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000015977	ResIII	PF04851.15	6.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000016188	-	5736	-	ENSTNIP00000015977	1911 (aa)	-	H3D637

Gene Model

Click here to download ENSTNIG00000012998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000012998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000012998	chd3	94	66.921	ENSTNIG00000008031	-	98	66.539
ENSTNIG00000012998	chd3	94	57.955	ENSTNIG00000004095	-	97	58.564
ENSTNIG00000012998	chd3	53	69.665	ENSTNIG00000004346	chd5	99	69.732

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000012998	chd3	99	73.202	ENSG00000170004	CHD3	96	73.771	Homo_sapiens
ENSTNIG00000012998	chd3	86	85.860	ENSAPOG00000005614	chd3	97	85.894	Acanthochromis_polyacanthus
ENSTNIG00000012998	chd3	69	76.356	ENSAMEG00000003025	-	100	75.988	Ailuropoda_melanoleuca
ENSTNIG00000012998	chd3	84	93.229	ENSACIG00000019671	chd3	99	90.909	Amphilophus_citrinellus
ENSTNIG00000012998	chd3	99	91.176	ENSAOCG00000023784	chd3	99	87.500	Amphiprion_ocellaris
ENSTNIG00000012998	chd3	99	91.046	ENSAPEG00000006341	chd3	95	85.968	Amphiprion_percula
ENSTNIG00000012998	chd3	98	85.296	ENSATEG00000000848	chd3	99	84.185	Anabas_testudineus
ENSTNIG00000012998	chd3	98	73.944	ENSACAG00000004276	CHD3	93	73.811	Anolis_carolinensis
ENSTNIG00000012998	chd3	96	73.793	ENSANAG00000034323	CHD3	99	73.506	Aotus_nancymaae
ENSTNIG00000012998	chd3	98	85.113	ENSACLG00000009222	chd3	99	85.828	Astatotilapia_calliptera
ENSTNIG00000012998	chd3	99	72.372	ENSBTAG00000014377	CHD3	95	73.824	Bos_taurus
ENSTNIG00000012998	chd3	99	73.151	ENSCJAG00000014766	CHD3	96	73.589	Callithrix_jacchus
ENSTNIG00000012998	chd3	99	72.400	ENSCAFG00000016859	CHD3	96	73.453	Canis_familiaris
ENSTNIG00000012998	chd3	95	74.854	ENSCAFG00020007422	CHD3	100	74.692	Canis_lupus_dingo
ENSTNIG00000012998	chd3	99	72.228	ENSCHIG00000016737	CHD3	97	72.598	Capra_hircus
ENSTNIG00000012998	chd3	100	72.948	ENSTSYG00000035658	CHD3	99	72.017	Carlito_syrichta
ENSTNIG00000012998	chd3	99	69.990	ENSCAPG00000014864	CHD3	96	70.276	Cavia_aperea
ENSTNIG00000012998	chd3	99	72.333	ENSCPOG00000022653	CHD3	96	72.588	Cavia_porcellus
ENSTNIG00000012998	chd3	99	73.151	ENSCCAG00000034792	CHD3	96	72.829	Cebus_capucinus
ENSTNIG00000012998	chd3	99	73.337	ENSCATG00000041717	CHD3	96	73.643	Cercocebus_atys
ENSTNIG00000012998	chd3	99	73.022	ENSCLAG00000010523	CHD3	98	73.665	Chinchilla_lanigera
ENSTNIG00000012998	chd3	99	72.554	ENSCSAG00000011122	CHD3	98	73.323	Chlorocebus_sabaeus
ENSTNIG00000012998	chd3	86	77.977	ENSCPBG00000011966	CHD3	99	78.349	Chrysemys_picta_bellii
ENSTNIG00000012998	chd3	99	73.147	ENSCANG00000037641	CHD3	99	71.792	Colobus_angolensis_palliatus
ENSTNIG00000012998	chd3	99	73.003	ENSCGRG00001011306	Chd3	98	73.499	Cricetulus_griseus_chok1gshd
ENSTNIG00000012998	chd3	99	66.187	ENSCGRG00000007878	Chd3	98	65.993	Cricetulus_griseus_crigri
ENSTNIG00000012998	chd3	94	89.877	ENSCSEG00000004489	chd3	99	89.877	Cynoglossus_semilaevis
ENSTNIG00000012998	chd3	94	85.909	ENSCVAG00000007293	chd3	99	85.964	Cyprinodon_variegatus
ENSTNIG00000012998	chd3	98	80.537	ENSDARG00000021405	chd3	99	81.058	Danio_rerio
ENSTNIG00000012998	chd3	91	73.783	ENSDNOG00000047846	CHD3	89	73.978	Dasypus_novemcinctus
ENSTNIG00000012998	chd3	99	73.040	ENSDORG00000010713	Chd3	98	73.818	Dipodomys_ordii
ENSTNIG00000012998	chd3	98	68.539	ENSETEG00000017733	CHD3	98	68.930	Echinops_telfairi
ENSTNIG00000012998	chd3	56	73.112	ENSEBUG00000008310	chd3	99	67.390	Eptatretus_burgeri
ENSTNIG00000012998	chd3	93	73.836	ENSEASG00005019360	CHD3	100	73.735	Equus_asinus_asinus
ENSTNIG00000012998	chd3	93	73.999	ENSECAG00000010051	CHD3	100	74.159	Equus_caballus
ENSTNIG00000012998	chd3	92	66.518	ENSEEUG00000015205	CHD3	84	90.722	Erinaceus_europaeus
ENSTNIG00000012998	chd3	80	95.918	ENSELUG00000019499	chd3	99	95.918	Esox_lucius
ENSTNIG00000012998	chd3	99	72.573	ENSFCAG00000009629	CHD3	93	73.425	Felis_catus
ENSTNIG00000012998	chd3	97	72.970	ENSFDAG00000008220	CHD3	95	73.594	Fukomys_damarensis
ENSTNIG00000012998	chd3	91	85.887	ENSGMOG00000013599	chd3	91	86.290	Gadus_morhua
ENSTNIG00000012998	chd3	60	83.391	ENSGAFG00000004055	chd3	99	85.211	Gambusia_affinis
ENSTNIG00000012998	chd3	99	82.454	ENSGACG00000019275	chd3	98	82.531	Gasterosteus_aculeatus
ENSTNIG00000012998	chd3	77	76.522	ENSGAGG00000013164	CHD3	99	76.308	Gopherus_agassizii
ENSTNIG00000012998	chd3	99	73.151	ENSGGOG00000013496	CHD3	99	71.693	Gorilla_gorilla
ENSTNIG00000012998	chd3	99	72.824	ENSHGLG00000012017	CHD3	97	72.330	Heterocephalus_glaber_female
ENSTNIG00000012998	chd3	89	66.617	ENSHGLG00100013902	CHD3	98	67.540	Heterocephalus_glaber_male
ENSTNIG00000012998	chd3	96	84.577	ENSHCOG00000010170	chd3	93	85.880	Hippocampus_comes
ENSTNIG00000012998	chd3	91	77.507	ENSIPUG00000003271	chd3	96	78.244	Ictalurus_punctatus
ENSTNIG00000012998	chd3	99	73.096	ENSSTOG00000025907	CHD3	98	73.703	Ictidomys_tridecemlineatus
ENSTNIG00000012998	chd3	99	73.394	ENSJJAG00000017633	Chd3	98	73.526	Jaculus_jaculus
ENSTNIG00000012998	chd3	98	82.455	ENSKMAG00000019292	chd3	99	84.550	Kryptolebias_marmoratus
ENSTNIG00000012998	chd3	95	81.267	ENSLBEG00000028485	chd3	92	81.689	Labrus_bergylta
ENSTNIG00000012998	chd3	97	71.151	ENSLACG00000008031	CHD3	96	71.813	Latimeria_chalumnae
ENSTNIG00000012998	chd3	98	76.946	ENSLOCG00000013965	chd3	89	84.524	Lepisosteus_oculatus
ENSTNIG00000012998	chd3	92	78.023	ENSLAFG00000000572	CHD3	94	77.911	Loxodonta_africana
ENSTNIG00000012998	chd3	99	73.337	ENSMFAG00000020113	CHD3	99	72.815	Macaca_fascicularis
ENSTNIG00000012998	chd3	96	76.524	ENSMMUG00000022221	CHD3	96	71.845	Macaca_mulatta
ENSTNIG00000012998	chd3	99	73.337	ENSMNEG00000001728	CHD3	99	73.673	Macaca_nemestrina
ENSTNIG00000012998	chd3	99	73.337	ENSMLEG00000032249	CHD3	96	73.643	Mandrillus_leucophaeus
ENSTNIG00000012998	chd3	86	88.501	ENSMAMG00000000564	chd3	99	88.621	Mastacembelus_armatus
ENSTNIG00000012998	chd3	99	72.952	ENSMAUG00000013873	Chd3	99	71.850	Mesocricetus_auratus
ENSTNIG00000012998	chd3	99	72.014	ENSMICG00000008741	CHD3	96	70.066	Microcebus_murinus
ENSTNIG00000012998	chd3	99	73.165	ENSMOCG00000004848	Chd3	98	73.499	Microtus_ochrogaster
ENSTNIG00000012998	chd3	96	85.861	ENSMMOG00000012699	chd3	99	85.891	Mola_mola
ENSTNIG00000012998	chd3	93	74.932	ENSMODG00000007509	CHD3	100	75.315	Monodelphis_domestica
ENSTNIG00000012998	chd3	99	72.967	MGP_CAROLIEiJ_G0016564	Chd3	98	74.296	Mus_caroli
ENSTNIG00000012998	chd3	99	72.746	ENSMUSG00000018474	Chd3	98	74.060	Mus_musculus
ENSTNIG00000012998	chd3	99	73.131	MGP_PahariEiJ_G0017695	Chd3	98	74.378	Mus_pahari
ENSTNIG00000012998	chd3	99	72.746	MGP_SPRETEiJ_G0017400	Chd3	98	74.218	Mus_spretus
ENSTNIG00000012998	chd3	88	75.515	ENSMPUG00000008861	CHD3	99	75.157	Mustela_putorius_furo
ENSTNIG00000012998	chd3	99	72.650	ENSMLUG00000014643	-	96	72.727	Myotis_lucifugus
ENSTNIG00000012998	chd3	99	72.428	ENSNGAG00000000773	Chd3	96	72.945	Nannospalax_galili
ENSTNIG00000012998	chd3	87	85.401	ENSNBRG00000000636	chd3	98	85.664	Neolamprologus_brichardi
ENSTNIG00000012998	chd3	98	72.112	ENSNLEG00000009770	CHD3	98	71.697	Nomascus_leucogenys
ENSTNIG00000012998	chd3	85	80.392	ENSMEUG00000005852	CHD3	84	80.392	Notamacropus_eugenii
ENSTNIG00000012998	chd3	95	73.477	ENSOPRG00000011069	CHD3	99	73.186	Ochotona_princeps
ENSTNIG00000012998	chd3	99	72.314	ENSODEG00000017785	CHD3	97	72.760	Octodon_degus
ENSTNIG00000012998	chd3	97	86.822	ENSONIG00000009292	chd3	98	86.957	Oreochromis_niloticus
ENSTNIG00000012998	chd3	99	69.665	ENSOCUG00000029299	CHD3	98	70.174	Oryctolagus_cuniculus
ENSTNIG00000012998	chd3	83	81.949	ENSORLG00000007107	chd3	93	82.221	Oryzias_latipes
ENSTNIG00000012998	chd3	58	83.556	ENSORLG00020008387	chd3	94	84.484	Oryzias_latipes_hni
ENSTNIG00000012998	chd3	86	87.112	ENSOMEG00000013691	chd3	99	87.768	Oryzias_melastigma
ENSTNIG00000012998	chd3	99	72.414	ENSOGAG00000003216	CHD3	98	72.709	Otolemur_garnettii
ENSTNIG00000012998	chd3	99	73.069	ENSOARG00000017855	CHD3	96	73.766	Ovis_aries
ENSTNIG00000012998	chd3	99	71.557	ENSPPAG00000032886	CHD3	99	71.054	Pan_paniscus
ENSTNIG00000012998	chd3	99	73.465	ENSPPRG00000000626	CHD3	96	73.872	Panthera_pardus
ENSTNIG00000012998	chd3	99	73.202	ENSPTRG00000008714	CHD3	99	71.368	Pan_troglodytes
ENSTNIG00000012998	chd3	99	72.509	ENSPANG00000023938	CHD3	99	72.815	Papio_anubis
ENSTNIG00000012998	chd3	95	84.464	ENSPKIG00000006305	chd3	95	89.297	Paramormyrops_kingsleyae
ENSTNIG00000012998	chd3	57	79.839	ENSPSIG00000010177	CHD3	97	80.199	Pelodiscus_sinensis
ENSTNIG00000012998	chd3	99	72.736	ENSPEMG00000014262	Chd3	97	73.006	Peromyscus_maniculatus_bairdii
ENSTNIG00000012998	chd3	97	78.233	ENSPCIG00000005442	CHD3	95	78.123	Phascolarctos_cinereus
ENSTNIG00000012998	chd3	96	90.086	ENSPFOG00000012464	chd3	88	88.889	Poecilia_formosa
ENSTNIG00000012998	chd3	93	82.027	ENSPLAG00000002887	chd3	96	81.808	Poecilia_latipinna
ENSTNIG00000012998	chd3	97	84.923	ENSPREG00000011044	chd3	96	86.300	Poecilia_reticulata
ENSTNIG00000012998	chd3	98	70.558	ENSPPYG00000007940	CHD3	98	70.968	Pongo_abelii
ENSTNIG00000012998	chd3	95	77.408	ENSPCAG00000004350	CHD3	94	77.496	Procavia_capensis
ENSTNIG00000012998	chd3	99	73.137	ENSPCOG00000020952	CHD3	96	72.764	Propithecus_coquereli
ENSTNIG00000012998	chd3	81	73.388	ENSPVAG00000016344	CHD3	82	73.286	Pteropus_vampyrus
ENSTNIG00000012998	chd3	99	81.755	ENSPNAG00000020393	chd3	98	92.226	Pygocentrus_nattereri
ENSTNIG00000012998	chd3	93	73.679	ENSRNOG00000009722	Chd3	100	73.783	Rattus_norvegicus
ENSTNIG00000012998	chd3	99	71.400	ENSRBIG00000033562	CHD3	99	72.313	Rhinopithecus_bieti
ENSTNIG00000012998	chd3	99	73.337	ENSRROG00000029554	CHD3	99	72.703	Rhinopithecus_roxellana
ENSTNIG00000012998	chd3	99	73.202	ENSSBOG00000020719	CHD3	99	73.755	Saimiri_boliviensis_boliviensis
ENSTNIG00000012998	chd3	99	73.517	ENSSHAG00000014412	CHD3	98	73.473	Sarcophilus_harrisii
ENSTNIG00000012998	chd3	88	84.012	ENSSFOG00015023123	chd3	95	84.207	Scleropages_formosus
ENSTNIG00000012998	chd3	93	87.553	ENSSMAG00000006451	chd3	100	87.856	Scophthalmus_maximus
ENSTNIG00000012998	chd3	56	83.670	ENSSDUG00000005792	chd3	96	84.672	Seriola_dumerili
ENSTNIG00000012998	chd3	97	91.176	ENSSPAG00000013694	chd3	99	95.213	Stegastes_partitus
ENSTNIG00000012998	chd3	99	72.355	ENSSSCG00000021363	CHD3	100	74.197	Sus_scrofa
ENSTNIG00000012998	chd3	80	86.316	ENSTRUG00000014990	chd3	93	88.846	Takifugu_rubripes
ENSTNIG00000012998	chd3	61	84.404	ENSTBEG00000011454	-	70	84.404	Tupaia_belangeri
ENSTNIG00000012998	chd3	96	77.070	ENSTTRG00000010295	CHD3	94	75.896	Tursiops_truncatus
ENSTNIG00000012998	chd3	93	73.054	ENSUAMG00000005475	CHD3	99	72.993	Ursus_americanus
ENSTNIG00000012998	chd3	51	91.489	ENSVPAG00000010794	-	61	92.727	Vicugna_pacos
ENSTNIG00000012998	chd3	96	73.587	ENSVVUG00000028011	CHD3	99	74.490	Vulpes_vulpes
ENSTNIG00000012998	chd3	99	67.926	ENSXETG00000012991	chd3	92	69.374	Xenopus_tropicalis
ENSTNIG00000012998	chd3	56	90.089	ENSXCOG00000000809	chd3	93	91.314	Xiphophorus_couchianus
ENSTNIG00000012998	chd3	82	89.055	ENSXMAG00000016035	chd3	99	89.648	Xiphophorus_maculatus