EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000013008 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 1312 bases
Position: chr20:1438887-1440198
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000015987	zf-C2H2	PF00096.26	1.1e-17	1	4
ENSTNIP00000015987	zf-C2H2	PF00096.26	1.1e-17	2	4
ENSTNIP00000015987	zf-C2H2	PF00096.26	1.1e-17	3	4
ENSTNIP00000015987	zf-C2H2	PF00096.26	1.1e-17	4	4
ENSTNIP00000015987	zf-met	PF12874.7	3.7e-13	1	3
ENSTNIP00000015987	zf-met	PF12874.7	3.7e-13	2	3
ENSTNIP00000015987	zf-met	PF12874.7	3.7e-13	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000016198	-	993	-	ENSTNIP00000015987	331 (aa)	-	H3D647

Gene Model

Click here to download ENSTNIG00000013008's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000013008's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000013008	-	50	45.455	ENSTNIG00000005479	-	71	45.455
ENSTNIG00000013008	-	56	44.444	ENSTNIG00000005856	-	96	44.444
ENSTNIG00000013008	-	98	41.071	ENSTNIG00000008242	-	78	47.826
ENSTNIG00000013008	-	50	44.643	ENSTNIG00000000330	-	92	44.643
ENSTNIG00000013008	-	50	41.818	ENSTNIG00000000934	-	90	41.818
ENSTNIG00000013008	-	98	46.429	ENSTNIG00000000320	-	96	51.923
ENSTNIG00000013008	-	99	41.667	ENSTNIG00000008200	-	74	44.643
ENSTNIG00000013008	-	99	47.059	ENSTNIG00000011188	-	65	47.059
ENSTNIG00000013008	-	99	44.898	ENSTNIG00000019069	-	67	48.980
ENSTNIG00000013008	-	99	34.118	ENSTNIG00000018984	-	74	43.636
ENSTNIG00000013008	-	99	47.059	ENSTNIG00000001164	ZNF628	85	47.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000013008	-	52	65.574	ENSCGRG00000000462	Sall4	62	54.667	Cricetulus_griseus_crigri
ENSTNIG00000013008	-	55	63.934	ENSJJAG00000020688	Sall4	50	60.000	Jaculus_jaculus
ENSTNIG00000013008	-	100	53.571	ENSMAUG00000015814	Sall4	57	53.333	Mesocricetus_auratus
ENSTNIG00000013008	-	64	56.604	ENSMOCG00000018245	Sall4	52	61.194	Microtus_ochrogaster
ENSTNIG00000013008	-	51	55.357	MGP_CAROLIEiJ_G0024723	Sall4	50	61.194	Mus_caroli
ENSTNIG00000013008	-	55	67.213	ENSMUSG00000027547	Sall4	50	61.194	Mus_musculus
ENSTNIG00000013008	-	54	55.357	MGP_PahariEiJ_G0026164	Sall4	50	62.687	Mus_pahari
ENSTNIG00000013008	-	55	67.213	MGP_SPRETEiJ_G0025643	Sall4	50	61.194	Mus_spretus
ENSTNIG00000013008	-	56	65.574	ENSPEMG00000022706	Sall4	51	62.687	Peromyscus_maniculatus_bairdii