EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000013297 (Gene tree)
Gene ID: -
Gene Symbol: pop1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 5659 bases
Position: chr8:9894630-9900288
Accession: ZDB-GENE-120911-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000016287	POP1	PF06978.11	7.4e-36	1	2
ENSTNIP00000016287	POP1	PF06978.11	7.4e-36	2	2
ENSTNIP00000002434	POP1	PF06978.11	8e-36	1	2
ENSTNIP00000002434	POP1	PF06978.11	8e-36	2	2
ENSTNIP00000016287	POPLD	PF08170.12	2.6e-27	1	1
ENSTNIP00000002434	POPLD	PF08170.12	2.7e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000016499	-	2826	-	ENSTNIP00000016287	941 (aa)	-	H3D6Z6
ENSTNIT00000002797	-	2889	-	ENSTNIP00000002434	962 (aa)	-	H3C2G6

Gene Model

Click here to download ENSTNIG00000013297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000013297's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000013297	pop1	99	49.066	ENSG00000104356	POP1	92	49.117	Homo_sapiens
ENSTNIG00000013297	pop1	100	71.619	ENSAPOG00000008198	pop1	95	71.619	Acanthochromis_polyacanthus
ENSTNIG00000013297	pop1	99	47.423	ENSAMEG00000000556	POP1	93	47.423	Ailuropoda_melanoleuca
ENSTNIG00000013297	pop1	96	67.738	ENSACIG00000004169	POP1	93	67.203	Amphilophus_citrinellus
ENSTNIG00000013297	pop1	100	71.311	ENSAOCG00000010991	pop1	95	71.311	Amphiprion_ocellaris
ENSTNIG00000013297	pop1	96	67.410	ENSAPEG00000007607	pop1	95	67.410	Amphiprion_percula
ENSTNIG00000013297	pop1	99	70.855	ENSATEG00000024814	POP1	95	70.855	Anabas_testudineus
ENSTNIG00000013297	pop1	98	47.904	ENSAPLG00000014418	POP1	99	47.794	Anas_platyrhynchos
ENSTNIG00000013297	pop1	96	47.655	ENSACAG00000016083	POP1	91	47.202	Anolis_carolinensis
ENSTNIG00000013297	pop1	86	59.058	ENSANAG00000026360	POP1	92	59.058	Aotus_nancymaae
ENSTNIG00000013297	pop1	100	68.834	ENSACLG00000010951	pop1	95	68.834	Astatotilapia_calliptera
ENSTNIG00000013297	pop1	98	56.926	ENSAMXG00000014483	POP1	94	56.926	Astyanax_mexicanus
ENSTNIG00000013297	pop1	72	30.556	WBGene00015486	C05D11.9	89	30.556	Caenorhabditis_elegans
ENSTNIG00000013297	pop1	99	48.315	ENSCJAG00000015567	POP1	94	47.764	Callithrix_jacchus
ENSTNIG00000013297	pop1	99	48.387	ENSCAFG00000000469	POP1	93	48.387	Canis_familiaris
ENSTNIG00000013297	pop1	99	47.804	ENSCAFG00020026765	POP1	93	47.804	Canis_lupus_dingo
ENSTNIG00000013297	pop1	99	48.021	ENSCHIG00000017066	POP1	92	48.279	Capra_hircus
ENSTNIG00000013297	pop1	99	47.624	ENSTSYG00000003097	POP1	92	47.624	Carlito_syrichta
ENSTNIG00000013297	pop1	99	47.500	ENSCAPG00000007251	POP1	92	47.260	Cavia_aperea
ENSTNIG00000013297	pop1	99	48.801	ENSCPOG00000002901	POP1	92	48.340	Cavia_porcellus
ENSTNIG00000013297	pop1	99	48.315	ENSCCAG00000018939	POP1	95	47.764	Cebus_capucinus
ENSTNIG00000013297	pop1	99	48.004	ENSCATG00000040916	POP1	93	48.004	Cercocebus_atys
ENSTNIG00000013297	pop1	99	48.545	ENSCLAG00000007208	POP1	89	48.750	Chinchilla_lanigera
ENSTNIG00000013297	pop1	96	48.617	ENSCSAG00000012340	POP1	99	48.617	Chlorocebus_sabaeus
ENSTNIG00000013297	pop1	99	46.347	ENSCHOG00000011432	POP1	92	51.876	Choloepus_hoffmanni
ENSTNIG00000013297	pop1	97	50.426	ENSCPBG00000006373	POP1	91	50.210	Chrysemys_picta_bellii
ENSTNIG00000013297	pop1	87	33.852	ENSCING00000008323	-	89	33.721	Ciona_intestinalis
ENSTNIG00000013297	pop1	99	47.755	ENSCANG00000001647	POP1	93	47.755	Colobus_angolensis_palliatus
ENSTNIG00000013297	pop1	100	47.472	ENSCGRG00001017308	Pop1	93	47.472	Cricetulus_griseus_chok1gshd
ENSTNIG00000013297	pop1	97	44.846	ENSCGRG00000010824	Pop1	93	44.846	Cricetulus_griseus_crigri
ENSTNIG00000013297	pop1	100	66.084	ENSCSEG00000008737	POP1	95	66.084	Cynoglossus_semilaevis
ENSTNIG00000013297	pop1	100	66.839	ENSCVAG00000022248	pop1	95	66.839	Cyprinodon_variegatus
ENSTNIG00000013297	pop1	100	45.581	ENSDNOG00000019974	POP1	93	45.482	Dasypus_novemcinctus
ENSTNIG00000013297	pop1	99	43.519	ENSDORG00000015384	Pop1	93	43.460	Dipodomys_ordii
ENSTNIG00000013297	pop1	66	32.919	FBgn0026702	l(1)G0045	97	32.263	Drosophila_melanogaster
ENSTNIG00000013297	pop1	86	48.303	ENSETEG00000007839	POP1	80	48.111	Echinops_telfairi
ENSTNIG00000013297	pop1	50	36.821	ENSEBUG00000014694	-	99	36.620	Eptatretus_burgeri
ENSTNIG00000013297	pop1	99	47.755	ENSEASG00005003189	POP1	92	47.546	Equus_asinus_asinus
ENSTNIG00000013297	pop1	99	47.857	ENSECAG00000024236	POP1	93	47.604	Equus_caballus
ENSTNIG00000013297	pop1	54	74.026	ENSEEUG00000003050	-	53	77.273	Erinaceus_europaeus
ENSTNIG00000013297	pop1	98	62.526	ENSELUG00000003526	pop1	93	62.947	Esox_lucius
ENSTNIG00000013297	pop1	99	48.457	ENSFCAG00000002168	POP1	93	48.457	Felis_catus
ENSTNIG00000013297	pop1	97	46.631	ENSFALG00000005711	POP1	92	46.365	Ficedula_albicollis
ENSTNIG00000013297	pop1	99	48.854	ENSFDAG00000017068	POP1	92	49.059	Fukomys_damarensis
ENSTNIG00000013297	pop1	100	67.146	ENSFHEG00000019518	pop1	96	67.248	Fundulus_heteroclitus
ENSTNIG00000013297	pop1	99	60.950	ENSGMOG00000000659	POP1	97	60.537	Gadus_morhua
ENSTNIG00000013297	pop1	100	67.227	ENSGAFG00000019770	POP1	95	67.227	Gambusia_affinis
ENSTNIG00000013297	pop1	100	67.650	ENSGACG00000003499	pop1	94	67.650	Gasterosteus_aculeatus
ENSTNIG00000013297	pop1	97	50.318	ENSGAGG00000011737	POP1	89	49.790	Gopherus_agassizii
ENSTNIG00000013297	pop1	99	49.016	ENSGGOG00000003176	POP1	92	49.277	Gorilla_gorilla
ENSTNIG00000013297	pop1	100	68.834	ENSHBUG00000021583	pop1	95	68.834	Haplochromis_burtoni
ENSTNIG00000013297	pop1	99	48.279	ENSHGLG00000006029	POP1	92	48.384	Heterocephalus_glaber_female
ENSTNIG00000013297	pop1	99	48.279	ENSHGLG00100016879	POP1	92	48.384	Heterocephalus_glaber_male
ENSTNIG00000013297	pop1	96	66.739	ENSHCOG00000013888	pop1	96	66.522	Hippocampus_comes
ENSTNIG00000013297	pop1	98	53.053	ENSIPUG00000018336	pop1	95	53.053	Ictalurus_punctatus
ENSTNIG00000013297	pop1	99	47.732	ENSSTOG00000011455	POP1	89	47.777	Ictidomys_tridecemlineatus
ENSTNIG00000013297	pop1	99	47.077	ENSJJAG00000013325	Pop1	93	46.862	Jaculus_jaculus
ENSTNIG00000013297	pop1	99	69.465	ENSKMAG00000001346	POP1	95	69.465	Kryptolebias_marmoratus
ENSTNIG00000013297	pop1	95	67.470	ENSLBEG00000024457	POP1	94	66.992	Labrus_bergylta
ENSTNIG00000013297	pop1	98	49.640	ENSLACG00000012498	POP1	98	49.743	Latimeria_chalumnae
ENSTNIG00000013297	pop1	98	57.380	ENSLOCG00000009817	POP1	94	57.099	Lepisosteus_oculatus
ENSTNIG00000013297	pop1	99	49.538	ENSLAFG00000010770	POP1	93	49.434	Loxodonta_africana
ENSTNIG00000013297	pop1	99	47.959	ENSMFAG00000000347	POP1	93	47.959	Macaca_fascicularis
ENSTNIG00000013297	pop1	99	47.755	ENSMNEG00000036870	POP1	93	47.857	Macaca_nemestrina
ENSTNIG00000013297	pop1	99	48.061	ENSMLEG00000034986	POP1	93	48.061	Mandrillus_leucophaeus
ENSTNIG00000013297	pop1	100	70.764	ENSMAMG00000004040	pop1	95	70.248	Mastacembelus_armatus
ENSTNIG00000013297	pop1	100	68.834	ENSMZEG00005025448	pop1	95	68.834	Maylandia_zebra
ENSTNIG00000013297	pop1	97	46.937	ENSMGAG00000012167	POP1	93	46.578	Meleagris_gallopavo
ENSTNIG00000013297	pop1	100	47.222	ENSMAUG00000017537	Pop1	93	47.222	Mesocricetus_auratus
ENSTNIG00000013297	pop1	99	48.861	ENSMICG00000004361	POP1	92	48.755	Microcebus_murinus
ENSTNIG00000013297	pop1	99	48.218	ENSMOCG00000006356	Pop1	92	48.109	Microtus_ochrogaster
ENSTNIG00000013297	pop1	97	67.061	ENSMMOG00000018242	pop1	95	67.061	Mola_mola
ENSTNIG00000013297	pop1	98	48.637	ENSMODG00000006561	POP1	91	48.532	Monodelphis_domestica
ENSTNIG00000013297	pop1	99	68.524	ENSMALG00000012621	POP1	94	68.731	Monopterus_albus
ENSTNIG00000013297	pop1	100	46.926	MGP_CAROLIEiJ_G0019726	Pop1	93	46.914	Mus_caroli
ENSTNIG00000013297	pop1	100	46.708	ENSMUSG00000022325	Pop1	93	46.694	Mus_musculus
ENSTNIG00000013297	pop1	100	46.557	MGP_PahariEiJ_G0019735	Pop1	93	46.543	Mus_pahari
ENSTNIG00000013297	pop1	100	47.004	MGP_SPRETEiJ_G0020622	Pop1	93	46.901	Mus_spretus
ENSTNIG00000013297	pop1	99	48.251	ENSMPUG00000015250	POP1	93	48.251	Mustela_putorius_furo
ENSTNIG00000013297	pop1	99	46.920	ENSMLUG00000010204	POP1	93	46.920	Myotis_lucifugus
ENSTNIG00000013297	pop1	99	47.385	ENSNGAG00000001582	Pop1	93	47.374	Nannospalax_galili
ENSTNIG00000013297	pop1	95	65.652	ENSNBRG00000002356	pop1	94	65.628	Neolamprologus_brichardi
ENSTNIG00000013297	pop1	99	48.910	ENSNLEG00000002541	POP1	92	48.910	Nomascus_leucogenys
ENSTNIG00000013297	pop1	92	56.433	ENSMEUG00000003118	POP1	90	56.433	Notamacropus_eugenii
ENSTNIG00000013297	pop1	99	49.163	ENSOPRG00000007667	POP1	92	48.952	Ochotona_princeps
ENSTNIG00000013297	pop1	99	47.808	ENSODEG00000003984	POP1	92	47.808	Octodon_degus
ENSTNIG00000013297	pop1	100	70.052	ENSONIG00000016445	pop1	95	69.247	Oreochromis_niloticus
ENSTNIG00000013297	pop1	55	59.701	ENSOANG00000001278	-	82	55.556	Ornithorhynchus_anatinus
ENSTNIG00000013297	pop1	99	47.555	ENSOCUG00000017400	POP1	92	47.673	Oryctolagus_cuniculus
ENSTNIG00000013297	pop1	98	68.471	ENSORLG00000002839	pop1	95	68.191	Oryzias_latipes
ENSTNIG00000013297	pop1	96	66.235	ENSORLG00020022450	POP1	96	66.235	Oryzias_latipes_hni
ENSTNIG00000013297	pop1	98	68.896	ENSORLG00015012746	POP1	94	68.896	Oryzias_latipes_hsok
ENSTNIG00000013297	pop1	98	68.251	ENSOMEG00000006915	pop1	94	68.251	Oryzias_melastigma
ENSTNIG00000013297	pop1	99	49.066	ENSOGAG00000001466	POP1	92	49.066	Otolemur_garnettii
ENSTNIG00000013297	pop1	99	48.965	ENSPPAG00000018410	POP1	92	49.068	Pan_paniscus
ENSTNIG00000013297	pop1	99	47.769	ENSPPRG00000005002	POP1	93	47.769	Panthera_pardus
ENSTNIG00000013297	pop1	99	47.870	ENSPTIG00000016527	POP1	93	47.870	Panthera_tigris_altaica
ENSTNIG00000013297	pop1	99	48.965	ENSPTRG00000020458	POP1	92	49.068	Pan_troglodytes
ENSTNIG00000013297	pop1	99	48.163	ENSPANG00000009704	POP1	93	48.163	Papio_anubis
ENSTNIG00000013297	pop1	98	59.067	ENSPKIG00000016325	POP1	93	59.197	Paramormyrops_kingsleyae
ENSTNIG00000013297	pop1	97	48.254	ENSPSIG00000012343	POP1	91	47.962	Pelodiscus_sinensis
ENSTNIG00000013297	pop1	96	65.104	ENSPMGG00000022253	POP1	95	64.316	Periophthalmus_magnuspinnatus
ENSTNIG00000013297	pop1	100	46.269	ENSPEMG00000023633	Pop1	94	46.269	Peromyscus_maniculatus_bairdii
ENSTNIG00000013297	pop1	96	43.587	ENSPMAG00000003209	POP1	100	43.365	Petromyzon_marinus
ENSTNIG00000013297	pop1	97	49.413	ENSPCIG00000012216	POP1	90	49.306	Phascolarctos_cinereus
ENSTNIG00000013297	pop1	100	67.503	ENSPFOG00000012490	POP1	95	67.469	Poecilia_formosa
ENSTNIG00000013297	pop1	100	67.469	ENSPLAG00000004646	POP1	95	67.469	Poecilia_latipinna
ENSTNIG00000013297	pop1	100	67.471	ENSPMEG00000019592	POP1	95	67.471	Poecilia_mexicana
ENSTNIG00000013297	pop1	100	67.678	ENSPREG00000020951	POP1	95	67.678	Poecilia_reticulata
ENSTNIG00000013297	pop1	99	48.914	ENSPPYG00000018777	POP1	92	49.018	Pongo_abelii
ENSTNIG00000013297	pop1	99	46.514	ENSPCAG00000016662	POP1	92	46.499	Procavia_capensis
ENSTNIG00000013297	pop1	99	47.996	ENSPCOG00000019420	POP1	92	47.466	Propithecus_coquereli
ENSTNIG00000013297	pop1	99	48.287	ENSPVAG00000014468	POP1	93	48.497	Pteropus_vampyrus
ENSTNIG00000013297	pop1	95	66.304	ENSPNYG00000004476	pop1	95	66.237	Pundamilia_nyererei
ENSTNIG00000013297	pop1	98	53.333	ENSPNAG00000000265	pop1	95	55.758	Pygocentrus_nattereri
ENSTNIG00000013297	pop1	100	46.920	ENSRNOG00000005243	Pop1	94	46.169	Rattus_norvegicus
ENSTNIG00000013297	pop1	99	48.209	ENSRBIG00000007996	POP1	93	48.311	Rhinopithecus_bieti
ENSTNIG00000013297	pop1	99	48.209	ENSRROG00000012334	POP1	93	48.209	Rhinopithecus_roxellana
ENSTNIG00000013297	pop1	99	47.996	ENSSBOG00000020830	POP1	94	47.449	Saimiri_boliviensis_boliviensis
ENSTNIG00000013297	pop1	98	48.542	ENSSHAG00000000296	POP1	91	48.438	Sarcophilus_harrisii
ENSTNIG00000013297	pop1	98	59.893	ENSSFOG00015007429	pop1	92	59.893	Scleropages_formosus
ENSTNIG00000013297	pop1	96	69.438	ENSSMAG00000010467	POP1	95	69.870	Scophthalmus_maximus
ENSTNIG00000013297	pop1	100	69.703	ENSSDUG00000007817	POP1	95	70.829	Seriola_dumerili
ENSTNIG00000013297	pop1	100	70.010	ENSSLDG00000012565	POP1	95	71.136	Seriola_lalandi_dorsalis
ENSTNIG00000013297	pop1	98	46.744	ENSSPUG00000003550	-	91	46.842	Sphenodon_punctatus
ENSTNIG00000013297	pop1	97	70.721	ENSSPAG00000014955	pop1	97	69.872	Stegastes_partitus
ENSTNIG00000013297	pop1	100	48.806	ENSSSCG00000006078	POP1	93	48.806	Sus_scrofa
ENSTNIG00000013297	pop1	98	42.396	ENSTGUG00000012011	-	99	42.396	Taeniopygia_guttata
ENSTNIG00000013297	pop1	95	78.337	ENSTRUG00000010856	pop1	92	78.337	Takifugu_rubripes
ENSTNIG00000013297	pop1	99	45.138	ENSTBEG00000014214	POP1	98	45.138	Tupaia_belangeri
ENSTNIG00000013297	pop1	99	47.817	ENSTTRG00000016071	POP1	92	47.921	Tursiops_truncatus
ENSTNIG00000013297	pop1	97	48.677	ENSUAMG00000017309	POP1	95	48.677	Ursus_americanus
ENSTNIG00000013297	pop1	91	58.602	ENSUMAG00000016952	POP1	93	57.071	Ursus_maritimus
ENSTNIG00000013297	pop1	82	57.009	ENSVPAG00000008278	POP1	75	56.075	Vicugna_pacos
ENSTNIG00000013297	pop1	99	47.395	ENSVVUG00000010994	POP1	93	47.395	Vulpes_vulpes
ENSTNIG00000013297	pop1	95	60.596	ENSXCOG00000017043	POP1	95	58.793	Xiphophorus_couchianus
ENSTNIG00000013297	pop1	98	67.628	ENSXMAG00000002472	POP1	93	67.628	Xiphophorus_maculatus