EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTNIG00000013307 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Tetraodon_nigroviridis
Status
putative
Strand
Minus strand
Length
3689 bases
Position
chr8:10250254-10253942
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTNIP00000016297PABPPF00658.186e-3111
ENSTNIP00000016297RRM_5PF13893.63.6e-0812
ENSTNIP00000016297RRM_5PF13893.63.6e-0822
ENSTNIP00000016297RRM_1PF00076.222e-8614
ENSTNIP00000016297RRM_1PF00076.222e-8624
ENSTNIP00000016297RRM_1PF00076.222e-8634
ENSTNIP00000016297RRM_1PF00076.222e-8644
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTNIT00000016509-1938-ENSTNIP00000016297645 (aa)-H3D706
Gene Model
Click here to download ENSTNIG00000013307's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000013307's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTNIG00000013307pabpc1a10084.259ENSTNIG00000009153pabpc1b10084.105
ENSTNIG00000013307pabpc1a5537.349ENSTNIG00000011312elavl28837.349
ENSTNIG00000013307pabpc1a9971.317ENSTNIG00000016902pabpc49871.003
ENSTNIG00000013307pabpc1a5537.349ENSTNIG00000018572elavl39037.349
ENSTNIG00000013307pabpc1a5632.283ENSTNIG00000012186ncl5732.653
ENSTNIG00000013307pabpc1a5536.145ENSTNIG00000015485elavl48736.145
ENSTNIG00000013307pabpc1a9965.231ENSTNIG00000017903pabpc1l9965.084
ENSTNIG00000013307pabpc1a6036.905ENSTNIG00000017904rbm39b5536.905
ENSTNIG00000013307pabpc1a5731.746ENSTNIG00000013091TIAL17931.746
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTNIG00000013307pabpc1a5875.743ENSG00000184388PABPC1L2B9875.743Homo_sapiens
ENSTNIG00000013307pabpc1a5875.743ENSG00000186288PABPC1L2A9875.743Homo_sapiens
ENSTNIG00000013307pabpc1a10087.326ENSAPOG00000017776pabpc1b10087.326Acanthochromis_polyacanthus
ENSTNIG00000013307pabpc1a10092.713ENSAPOG00000015105pabpc1a10092.248Acanthochromis_polyacanthus
ENSTNIG00000013307pabpc1a5875.743ENSAMEG00000019441-9875.743Ailuropoda_melanoleuca
ENSTNIG00000013307pabpc1a10092.713ENSACIG00000004685pabpc1a10092.558Amphilophus_citrinellus
ENSTNIG00000013307pabpc1a10083.153ENSACIG00000018366pabpc1b10083.153Amphilophus_citrinellus
ENSTNIG00000013307pabpc1a10093.178ENSAOCG00000011656pabpc1a10092.713Amphiprion_ocellaris
ENSTNIG00000013307pabpc1a10087.017ENSAOCG00000019839pabpc1b10087.017Amphiprion_ocellaris
ENSTNIG00000013307pabpc1a10087.017ENSAPEG00000010435pabpc1b10087.017Amphiprion_percula
ENSTNIG00000013307pabpc1a10093.178ENSAPEG00000006963pabpc1a10092.713Amphiprion_percula
ENSTNIG00000013307pabpc1a10092.248ENSATEG00000024852pabpc1a10091.783Anabas_testudineus
ENSTNIG00000013307pabpc1a10086.265ENSATEG00000012917pabpc1b10086.265Anabas_testudineus
ENSTNIG00000013307pabpc1a5875.743ENSANAG00000019429-9875.743Aotus_nancymaae
ENSTNIG00000013307pabpc1a5875.743ENSANAG00000019431-9875.743Aotus_nancymaae
ENSTNIG00000013307pabpc1a10085.781ENSACLG00000014335pabpc1b10085.781Astatotilapia_calliptera
ENSTNIG00000013307pabpc1a10092.403ENSACLG00000009399pabpc1a9997.590Astatotilapia_calliptera
ENSTNIG00000013307pabpc1a10087.017ENSAMXG00000008599pabpc1b10087.017Astyanax_mexicanus
ENSTNIG00000013307pabpc1a5973.023ENSBTAG00000052491-9873.023Bos_taurus
ENSTNIG00000013307pabpc1a5974.882ENSBTAG00000050902-9874.882Bos_taurus
ENSTNIG00000013307pabpc1a5875.743ENSCJAG00000041326-9875.743Callithrix_jacchus
ENSTNIG00000013307pabpc1a5974.882ENSCAFG00020002052-9874.882Canis_lupus_dingo
ENSTNIG00000013307pabpc1a5875.743ENSCHIG00000006283-9875.743Capra_hircus
ENSTNIG00000013307pabpc1a5875.743ENSCHIG00000011138-9875.743Capra_hircus
ENSTNIG00000013307pabpc1a5875.743ENSTSYG00000001775-9875.743Carlito_syrichta
ENSTNIG00000013307pabpc1a5875.743ENSCPOG00000009525-9875.743Cavia_porcellus
ENSTNIG00000013307pabpc1a5875.743ENSCCAG00000031524-9875.743Cebus_capucinus
ENSTNIG00000013307pabpc1a5875.743ENSCATG00000042826-9875.743Cercocebus_atys
ENSTNIG00000013307pabpc1a5875.743ENSCATG00000043125-9875.743Cercocebus_atys
ENSTNIG00000013307pabpc1a5873.762ENSCLAG00000017412-9873.762Chinchilla_lanigera
ENSTNIG00000013307pabpc1a5873.762ENSCLAG00000017409-9873.762Chinchilla_lanigera
ENSTNIG00000013307pabpc1a5875.743ENSCSAG00000000102-9875.743Chlorocebus_sabaeus
ENSTNIG00000013307pabpc1a5875.936ENSCGRG00001023387-9673.632Cricetulus_griseus_chok1gshd
ENSTNIG00000013307pabpc1a9991.900ENSCSEG00000013324pabpc1a10091.433Cynoglossus_semilaevis
ENSTNIG00000013307pabpc1a10085.471ENSCSEG00000015241-10085.471Cynoglossus_semilaevis
ENSTNIG00000013307pabpc1a10084.105ENSCVAG00000005489pabpc1b10084.105Cyprinodon_variegatus
ENSTNIG00000013307pabpc1a10092.713ENSCVAG00000021872pabpc1a10091.938Cyprinodon_variegatus
ENSTNIG00000013307pabpc1a10085.471ENSDARG00000021140pabpc1b10085.626Danio_rerio
ENSTNIG00000013307pabpc1a10087.152ENSDARG00000017219pabpc1a10087.326Danio_rerio
ENSTNIG00000013307pabpc1a5875.897ENSDNOG00000030926-9874.257Dasypus_novemcinctus
ENSTNIG00000013307pabpc1a5873.267ENSDORG00000011362-9873.267Dipodomys_ordii
ENSTNIG00000013307pabpc1a5974.528ENSEASG00005010399-9874.528Equus_asinus_asinus
ENSTNIG00000013307pabpc1a5974.528ENSECAG00000002620-9874.528Equus_caballus
ENSTNIG00000013307pabpc1a5871.782ENSEEUG00000008203-9871.782Erinaceus_europaeus
ENSTNIG00000013307pabpc1a9989.938ENSELUG00000003614pabpc1a10089.474Esox_lucius
ENSTNIG00000013307pabpc1a5955.882ENSELUG00000005389-9755.882Esox_lucius
ENSTNIG00000013307pabpc1a10085.362ENSELUG00000015062-10085.362Esox_lucius
ENSTNIG00000013307pabpc1a5875.743ENSFCAG00000039701-9875.743Felis_catus
ENSTNIG00000013307pabpc1a5875.743ENSFDAG00000005484-9875.743Fukomys_damarensis
ENSTNIG00000013307pabpc1a10086.090ENSFHEG00000008186pabpc1b10086.090Fundulus_heteroclitus
ENSTNIG00000013307pabpc1a10092.248ENSFHEG00000018979pabpc1a10091.783Fundulus_heteroclitus
ENSTNIG00000013307pabpc1a9990.812ENSGMOG00000013448pabpc1a9990.812Gadus_morhua
ENSTNIG00000013307pabpc1a10078.955ENSGMOG00000002448-10078.955Gadus_morhua
ENSTNIG00000013307pabpc1a10092.403ENSGAFG00000019750pabpc1a10092.403Gambusia_affinis
ENSTNIG00000013307pabpc1a10086.553ENSGAFG00000010193pabpc1b10086.553Gambusia_affinis
ENSTNIG00000013307pabpc1a10092.558ENSGACG00000003572pabpc1a10091.938Gasterosteus_aculeatus
ENSTNIG00000013307pabpc1a10084.969ENSGACG00000003771pabpc1b10084.969Gasterosteus_aculeatus
ENSTNIG00000013307pabpc1a5875.743ENSGGOG00000038606-9875.743Gorilla_gorilla
ENSTNIG00000013307pabpc1a5875.743ENSGGOG00000043933-9875.743Gorilla_gorilla
ENSTNIG00000013307pabpc1a10085.781ENSHBUG00000002075pabpc1b10085.781Haplochromis_burtoni
ENSTNIG00000013307pabpc1a10092.403ENSHBUG00000020487pabpc1a9997.590Haplochromis_burtoni
ENSTNIG00000013307pabpc1a5874.752ENSHGLG00000019668-9874.752Heterocephalus_glaber_female
ENSTNIG00000013307pabpc1a5874.752ENSHGLG00000019762-9874.752Heterocephalus_glaber_female
ENSTNIG00000013307pabpc1a5874.752ENSHGLG00100020854-9874.752Heterocephalus_glaber_male
ENSTNIG00000013307pabpc1a8084.524ENSHCOG00000003175pabpc1b9784.524Hippocampus_comes
ENSTNIG00000013307pabpc1a10092.248ENSHCOG00000013502pabpc1a10091.783Hippocampus_comes
ENSTNIG00000013307pabpc1a10081.762ENSIPUG00000010791-10081.607Ictalurus_punctatus
ENSTNIG00000013307pabpc1a6062.532ENSIPUG00000021244-5462.532Ictalurus_punctatus
ENSTNIG00000013307pabpc1a10086.512ENSIPUG00000008848pabpc1a10086.512Ictalurus_punctatus
ENSTNIG00000013307pabpc1a7658.209ENSIPUG00000018724-7958.209Ictalurus_punctatus
ENSTNIG00000013307pabpc1a5875.248ENSSTOG00000026028-9875.248Ictidomys_tridecemlineatus
ENSTNIG00000013307pabpc1a5875.248ENSSTOG00000022096-9875.248Ictidomys_tridecemlineatus
ENSTNIG00000013307pabpc1a5874.257ENSJJAG00000007037-9874.257Jaculus_jaculus
ENSTNIG00000013307pabpc1a10085.449ENSKMAG00000008049pabpc1b10085.449Kryptolebias_marmoratus
ENSTNIG00000013307pabpc1a10093.023ENSKMAG00000000605pabpc1a10092.248Kryptolebias_marmoratus
ENSTNIG00000013307pabpc1a10092.558ENSLBEG00000024002-10092.093Labrus_bergylta
ENSTNIG00000013307pabpc1a10086.090ENSLBEG00000026845pabpc1b10086.090Labrus_bergylta
ENSTNIG00000013307pabpc1a5874.627ENSLAFG00000023096-9874.627Loxodonta_africana
ENSTNIG00000013307pabpc1a5875.369ENSMFAG00000028878-9875.369Macaca_fascicularis
ENSTNIG00000013307pabpc1a5875.743ENSMMUG00000009740-9875.743Macaca_mulatta
ENSTNIG00000013307pabpc1a5875.743ENSMMUG00000037681-9875.743Macaca_mulatta
ENSTNIG00000013307pabpc1a5875.743ENSMMUG00000039929-9875.743Macaca_mulatta
ENSTNIG00000013307pabpc1a5875.743ENSMNEG00000037732-9875.743Macaca_nemestrina
ENSTNIG00000013307pabpc1a5875.743ENSMLEG00000027495-9875.743Mandrillus_leucophaeus
ENSTNIG00000013307pabpc1a10092.248ENSMAMG00000004502-10091.783Mastacembelus_armatus
ENSTNIG00000013307pabpc1a10086.708ENSMAMG00000014610pabpc1b10086.708Mastacembelus_armatus
ENSTNIG00000013307pabpc1a10085.781ENSMZEG00005026745pabpc1b10085.781Maylandia_zebra
ENSTNIG00000013307pabpc1a10092.403ENSMZEG00005025416pabpc1a9997.590Maylandia_zebra
ENSTNIG00000013307pabpc1a5875.743ENSMICG00000047642-9875.743Microcebus_murinus
ENSTNIG00000013307pabpc1a10091.692ENSMMOG00000018044pabpc1a9997.108Mola_mola
ENSTNIG00000013307pabpc1a10081.607ENSMMOG00000018009pabpc1b10081.144Mola_mola
ENSTNIG00000013307pabpc1a9870.616ENSMODG00000013156-9871.248Monodelphis_domestica
ENSTNIG00000013307pabpc1a9964.341ENSMODG00000015024-9964.341Monodelphis_domestica
ENSTNIG00000013307pabpc1a10091.783ENSMALG00000013020-10091.628Monopterus_albus
ENSTNIG00000013307pabpc1a10080.216ENSMALG00000006066pabpc1b10081.607Monopterus_albus
ENSTNIG00000013307pabpc1a5877.249ENSNGAG00000012688-9874.257Nannospalax_galili
ENSTNIG00000013307pabpc1a10092.248ENSNBRG00000003068-9997.590Neolamprologus_brichardi
ENSTNIG00000013307pabpc1a10085.626ENSNBRG00000013737pabpc1b10085.626Neolamprologus_brichardi
ENSTNIG00000013307pabpc1a5875.743ENSNLEG00000018128-9875.743Nomascus_leucogenys
ENSTNIG00000013307pabpc1a5875.248ENSODEG00000018540-9875.248Octodon_degus
ENSTNIG00000013307pabpc1a10085.626ENSONIG00000002717pabpc1b10085.626Oreochromis_niloticus
ENSTNIG00000013307pabpc1a10091.628ENSONIG00000006871-10091.473Oreochromis_niloticus
ENSTNIG00000013307pabpc1a5875.743ENSOCUG00000002565-9875.743Oryctolagus_cuniculus
ENSTNIG00000013307pabpc1a10091.628ENSORLG00000002691pabpc1a9498.771Oryzias_latipes
ENSTNIG00000013307pabpc1a10080.835ENSORLG00000003008-10080.371Oryzias_latipes
ENSTNIG00000013307pabpc1a10091.783ENSORLG00020022398pabpc1a10091.473Oryzias_latipes_hni
ENSTNIG00000013307pabpc1a10080.835ENSORLG00020022259-10080.371Oryzias_latipes_hni
ENSTNIG00000013307pabpc1a10081.144ENSORLG00015010932-10080.680Oryzias_latipes_hsok
ENSTNIG00000013307pabpc1a10091.628ENSORLG00015013633pabpc110091.318Oryzias_latipes_hsok
ENSTNIG00000013307pabpc1a9374.274ENSOMEG00000013627pabpc1b9980.787Oryzias_melastigma
ENSTNIG00000013307pabpc1a10091.938ENSOMEG00000020219pabpc1a10091.628Oryzias_melastigma
ENSTNIG00000013307pabpc1a5875.743ENSOGAG00000026047-9875.743Otolemur_garnettii
ENSTNIG00000013307pabpc1a5875.743ENSOGAG00000029513-9875.743Otolemur_garnettii
ENSTNIG00000013307pabpc1a5875.743ENSOARG00000005943-9875.743Ovis_aries
ENSTNIG00000013307pabpc1a5875.743ENSPPAG00000012920-9875.743Pan_paniscus
ENSTNIG00000013307pabpc1a5875.743ENSPPRG00000011804-9875.743Panthera_pardus
ENSTNIG00000013307pabpc1a5875.743ENSPPRG00000011809-9875.743Panthera_pardus
ENSTNIG00000013307pabpc1a5875.743ENSPTRG00000028252-9875.743Pan_troglodytes
ENSTNIG00000013307pabpc1a5875.743ENSPANG00000011549-9875.743Papio_anubis
ENSTNIG00000013307pabpc1a10087.017ENSPKIG00000005676pabpc1b10087.017Paramormyrops_kingsleyae
ENSTNIG00000013307pabpc1a6989.865ENSPMGG00000023134-9589.865Periophthalmus_magnuspinnatus
ENSTNIG00000013307pabpc1a6995.711ENSPMGG00000022487pabpc1a9095.711Periophthalmus_magnuspinnatus
ENSTNIG00000013307pabpc1a9869.859ENSPCIG00000016995-5569.702Phascolarctos_cinereus
ENSTNIG00000013307pabpc1a10092.508ENSPFOG00000010815pabpc1a10092.049Poecilia_formosa
ENSTNIG00000013307pabpc1a10086.090ENSPFOG00000005917pabpc1b10086.090Poecilia_formosa
ENSTNIG00000013307pabpc1a10093.333ENSPLAG00000004114pabpc1a10092.868Poecilia_latipinna
ENSTNIG00000013307pabpc1a10086.399ENSPLAG00000001388pabpc1b10086.399Poecilia_latipinna
ENSTNIG00000013307pabpc1a10093.333ENSPMEG00000001334pabpc1a10092.868Poecilia_mexicana
ENSTNIG00000013307pabpc1a10086.090ENSPMEG00000014399pabpc1b10086.090Poecilia_mexicana
ENSTNIG00000013307pabpc1a10086.399ENSPREG00000010911pabpc1b10086.399Poecilia_reticulata
ENSTNIG00000013307pabpc1a10090.630ENSPREG00000019595pabpc1a9999.509Poecilia_reticulata
ENSTNIG00000013307pabpc1a5875.743ENSPPYG00000020468-9875.743Pongo_abelii
ENSTNIG00000013307pabpc1a5875.743ENSPCAG00000005308-9875.743Procavia_capensis
ENSTNIG00000013307pabpc1a5875.248ENSPCOG00000026349-9875.248Propithecus_coquereli
ENSTNIG00000013307pabpc1a5876.119ENSPVAG00000016117-9876.119Pteropus_vampyrus
ENSTNIG00000013307pabpc1a10085.781ENSPNYG00000012578pabpc1b10085.781Pundamilia_nyererei
ENSTNIG00000013307pabpc1a10092.403ENSPNYG00000005192pabpc1a10092.248Pundamilia_nyererei
ENSTNIG00000013307pabpc1a10086.862ENSPNAG00000024626pabpc1b10086.862Pygocentrus_nattereri
ENSTNIG00000013307pabpc1a10086.997ENSPNAG00000028408pabpc1a9493.454Pygocentrus_nattereri
ENSTNIG00000013307pabpc1a8391.646ENSRBIG00000028738-9591.646Rhinopithecus_bieti
ENSTNIG00000013307pabpc1a5875.743ENSRBIG00000027173-9875.743Rhinopithecus_bieti
ENSTNIG00000013307pabpc1a5875.743ENSRROG00000017404-9875.743Rhinopithecus_roxellana
ENSTNIG00000013307pabpc1a9862.658ENSSHAG00000000511-10062.717Sarcophilus_harrisii
ENSTNIG00000013307pabpc1a6674.860ENSSFOG00015019668-8674.860Scleropages_formosus
ENSTNIG00000013307pabpc1a10086.687ENSSFOG00015002752-10086.687Scleropages_formosus
ENSTNIG00000013307pabpc1a10085.913ENSSFOG00015006662pabpc1a10085.913Scleropages_formosus
ENSTNIG00000013307pabpc1a10092.403ENSSMAG00000010803pabpc1a10091.938Scophthalmus_maximus
ENSTNIG00000013307pabpc1a10085.626ENSSMAG00000006869pabpc1b10085.626Scophthalmus_maximus
ENSTNIG00000013307pabpc1a10085.008ENSSDUG00000011965pabpc1b10085.008Seriola_dumerili
ENSTNIG00000013307pabpc1a10092.403ENSSDUG00000006675pabpc1a10092.403Seriola_dumerili
ENSTNIG00000013307pabpc1a10086.350ENSSLDG00000014156pabpc1b10086.350Seriola_lalandi_dorsalis
ENSTNIG00000013307pabpc1a10092.403ENSSLDG00000011661pabpc1a10092.403Seriola_lalandi_dorsalis
ENSTNIG00000013307pabpc1a10087.017ENSSPAG00000019265pabpc1b10087.017Stegastes_partitus
ENSTNIG00000013307pabpc1a10092.558ENSSPAG00000014453-10092.093Stegastes_partitus
ENSTNIG00000013307pabpc1a5875.743ENSSSCG00000036336-9875.743Sus_scrofa
ENSTNIG00000013307pabpc1a5875.743ENSSSCG00000032167-9875.743Sus_scrofa
ENSTNIG00000013307pabpc1a10095.659ENSTRUG00000011577-10095.659Takifugu_rubripes
ENSTNIG00000013307pabpc1a10083.179ENSTRUG00000003767-10083.179Takifugu_rubripes
ENSTNIG00000013307pabpc1a5875.743ENSTTRG00000013181-9875.743Tursiops_truncatus
ENSTNIG00000013307pabpc1a5875.743ENSUAMG00000008089-9875.743Ursus_americanus
ENSTNIG00000013307pabpc1a9753.429ENSUMAG00000023926-8967.391Ursus_maritimus
ENSTNIG00000013307pabpc1a5875.743ENSUMAG00000003364-9875.743Ursus_maritimus
ENSTNIG00000013307pabpc1a5874.757ENSVVUG00000015892-9774.757Vulpes_vulpes
ENSTNIG00000013307pabpc1a9745.958ENSXETG00000015439-9745.890Xenopus_tropicalis
ENSTNIG00000013307pabpc1a10088.062ENSXCOG00000017066pabpc1a10087.597Xiphophorus_couchianus
ENSTNIG00000013307pabpc1a10082.071ENSXCOG00000019901pabpc1b10082.253Xiphophorus_couchianus
ENSTNIG00000013307pabpc1a10093.023ENSXMAG00000002555pabpc1a10092.558Xiphophorus_maculatus
ENSTNIG00000013307pabpc1a10086.553ENSXMAG00000003753pabpc1b10086.553Xiphophorus_maculatus

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