EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000013920 (Gene tree)
Gene ID: -
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2818 bases
Position: chr2:11761320-11764137
Accession: ZDB-GENE-030131-9143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000016925	MMR_HSR1	PF01926.23	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000017139	-	708	-	ENSTNIP00000016925	235 (aa)	-	H3D8T4

Gene Model

Click here to download ENSTNIG00000013920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000013920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000013920	rab20	53	39.535	ENSTNIG00000009196	rab5aa	60	39.535
ENSTNIG00000013920	rab20	54	31.818	ENSTNIG00000001448	-	79	31.818
ENSTNIG00000013920	rab20	54	31.818	ENSTNIG00000004004	-	72	31.818
ENSTNIG00000013920	rab20	98	30.833	ENSTNIG00000001956	RAB9A	79	31.707
ENSTNIG00000013920	rab20	69	31.176	ENSTNIG00000008717	rab18a	81	31.176
ENSTNIG00000013920	rab20	80	31.795	ENSTNIG00000009039	rab14	71	31.795
ENSTNIG00000013920	rab20	54	34.091	ENSTNIG00000011081	rab11bb	61	34.091
ENSTNIG00000013920	rab20	53	30.233	ENSTNIG00000003472	rab2a	61	30.233
ENSTNIG00000013920	rab20	83	30.583	ENSTNIG00000014604	RAB7A	80	30.583
ENSTNIG00000013920	rab20	55	34.074	ENSTNIG00000013184	-	62	34.074
ENSTNIG00000013920	rab20	55	33.333	ENSTNIG00000013182	-	63	33.333
ENSTNIG00000013920	rab20	82	30.808	ENSTNIG00000018267	rab22a	82	30.808
ENSTNIG00000013920	rab20	51	32.031	ENSTNIG00000001043	si:ch211-247i17.1	63	33.594
ENSTNIG00000013920	rab20	97	30.165	ENSTNIG00000011711	rab5c	58	37.984
ENSTNIG00000013920	rab20	80	30.256	ENSTNIG00000016831	RAB41	73	30.256
ENSTNIG00000013920	rab20	50	31.148	ENSTNIG00000013137	ran	56	31.148
ENSTNIG00000013920	rab20	53	35.036	ENSTNIG00000010125	rab33ba	57	35.036
ENSTNIG00000013920	rab20	97	30.417	ENSTNIG00000005090	rab25a	81	31.308
ENSTNIG00000013920	rab20	55	33.582	ENSTNIG00000002003	-	66	33.582
ENSTNIG00000013920	rab20	55	34.815	ENSTNIG00000008784	-	83	34.815
ENSTNIG00000013920	rab20	83	30.583	ENSTNIG00000011114	-	80	30.583
ENSTNIG00000013920	rab20	83	31.000	ENSTNIG00000011300	si:dkey-16l2.16	77	31.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000013920	rab20	100	75.486	ENSATEG00000011117	rab20	95	75.820	Anabas_testudineus
ENSTNIG00000013920	rab20	100	62.553	ENSAPLG00000011744	RAB20	94	63.801	Anas_platyrhynchos
ENSTNIG00000013920	rab20	99	61.702	ENSACAG00000014045	RAB20	93	64.840	Anolis_carolinensis
ENSTNIG00000013920	rab20	100	66.935	ENSAMXG00000003504	rab20	94	69.099	Astyanax_mexicanus
ENSTNIG00000013920	rab20	99	64.957	ENSCPBG00000005866	RAB20	94	65.611	Chrysemys_picta_bellii
ENSTNIG00000013920	rab20	99	79.915	ENSCSEG00000011160	rab20	94	82.353	Cynoglossus_semilaevis
ENSTNIG00000013920	rab20	99	71.967	ENSDARG00000005049	rab20	91	75.000	Danio_rerio
ENSTNIG00000013920	rab20	99	69.261	ENSELUG00000004092	rab20	94	70.612	Esox_lucius
ENSTNIG00000013920	rab20	100	63.404	ENSFALG00000004409	RAB20	94	64.706	Ficedula_albicollis
ENSTNIG00000013920	rab20	100	81.857	ENSGACG00000003527	rab20	94	83.333	Gasterosteus_aculeatus
ENSTNIG00000013920	rab20	100	73.123	ENSHCOG00000013468	rab20	93	74.167	Hippocampus_comes
ENSTNIG00000013920	rab20	100	68.201	ENSIPUG00000000432	RAB20	91	70.796	Ictalurus_punctatus
ENSTNIG00000013920	rab20	100	68.201	ENSIPUG00000018288	RAB20	91	70.796	Ictalurus_punctatus
ENSTNIG00000013920	rab20	99	64.831	ENSLACG00000011001	RAB20	93	66.818	Latimeria_chalumnae
ENSTNIG00000013920	rab20	100	76.172	ENSMAMG00000015214	rab20	92	76.860	Mastacembelus_armatus
ENSTNIG00000013920	rab20	100	86.134	ENSMMOG00000020022	rab20	95	87.556	Mola_mola
ENSTNIG00000013920	rab20	100	61.667	ENSMEUG00000009442	RAB20	94	64.286	Notamacropus_eugenii
ENSTNIG00000013920	rab20	85	49.282	ENSPMAG00000004439	rab20	98	51.174	Petromyzon_marinus
ENSTNIG00000013920	rab20	100	68.852	ENSPNAG00000008867	rab20	94	71.616	Pygocentrus_nattereri
ENSTNIG00000013920	rab20	100	73.725	ENSSMAG00000018818	rab20	95	74.380	Scophthalmus_maximus
ENSTNIG00000013920	rab20	100	76.654	ENSSDUG00000005148	rab20	93	76.639	Seriola_dumerili
ENSTNIG00000013920	rab20	100	62.979	ENSTGUG00000008797	RAB20	94	64.253	Taeniopygia_guttata
ENSTNIG00000013920	rab20	100	85.214	ENSTRUG00000022951	rab20	93	85.656	Takifugu_rubripes