EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000014027 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 8559 bases
Position: chr21:5507523-5516081
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000017034	CPSF_A	PF03178.15	1.2e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000017250	-	4365	-	ENSTNIP00000017034	1454 (aa)	-	H3D943

Gene Model

Click here to download ENSTNIG00000014027's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000014027's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000014027	cpsf1	100	78.488	ENSG00000071894	CPSF1	100	78.832	Homo_sapiens
ENSTNIG00000014027	cpsf1	100	88.964	ENSAPOG00000019621	cpsf1	100	89.031	Acanthochromis_polyacanthus
ENSTNIG00000014027	cpsf1	97	77.605	ENSAMEG00000005557	CPSF1	99	77.534	Ailuropoda_melanoleuca
ENSTNIG00000014027	cpsf1	100	88.522	ENSACIG00000006112	cpsf1	100	88.729	Amphilophus_citrinellus
ENSTNIG00000014027	cpsf1	100	89.459	ENSAOCG00000007120	cpsf1	100	89.528	Amphiprion_ocellaris
ENSTNIG00000014027	cpsf1	100	90.349	ENSAPEG00000005755	cpsf1	100	90.418	Amphiprion_percula
ENSTNIG00000014027	cpsf1	100	88.844	ENSATEG00000011097	cpsf1	100	89.113	Anabas_testudineus
ENSTNIG00000014027	cpsf1	93	74.705	ENSACAG00000009655	CPSF1	100	74.558	Anolis_carolinensis
ENSTNIG00000014027	cpsf1	100	78.557	ENSANAG00000036514	CPSF1	100	78.763	Aotus_nancymaae
ENSTNIG00000014027	cpsf1	99	88.851	ENSACLG00000012231	cpsf1	99	88.593	Astatotilapia_calliptera
ENSTNIG00000014027	cpsf1	100	78.571	ENSAMXG00000008485	cpsf1	100	78.571	Astyanax_mexicanus
ENSTNIG00000014027	cpsf1	100	76.949	ENSBTAG00000008355	CPSF1	97	79.106	Bos_taurus
ENSTNIG00000014027	cpsf1	100	32.222	WBGene00022301	cpsf-1	94	41.141	Caenorhabditis_elegans
ENSTNIG00000014027	cpsf1	100	78.832	ENSCJAG00000021421	CPSF1	100	78.763	Callithrix_jacchus
ENSTNIG00000014027	cpsf1	96	78.820	ENSCAFG00000001600	CPSF1	100	78.769	Canis_familiaris
ENSTNIG00000014027	cpsf1	100	78.326	ENSCAFG00020020821	CPSF1	100	78.669	Canis_lupus_dingo
ENSTNIG00000014027	cpsf1	100	74.470	ENSCHIG00000015833	CPSF1	100	74.264	Capra_hircus
ENSTNIG00000014027	cpsf1	100	79.244	ENSTSYG00000028560	CPSF1	100	79.175	Carlito_syrichta
ENSTNIG00000014027	cpsf1	97	77.999	ENSCAPG00000014921	CPSF1	99	77.928	Cavia_aperea
ENSTNIG00000014027	cpsf1	100	77.473	ENSCPOG00000011448	CPSF1	100	77.404	Cavia_porcellus
ENSTNIG00000014027	cpsf1	100	78.998	ENSCCAG00000037658	CPSF1	100	78.929	Cebus_capucinus
ENSTNIG00000014027	cpsf1	100	78.557	ENSCATG00000037234	CPSF1	100	78.763	Cercocebus_atys
ENSTNIG00000014027	cpsf1	100	78.763	ENSCLAG00000012166	CPSF1	100	78.694	Chinchilla_lanigera
ENSTNIG00000014027	cpsf1	100	78.763	ENSCSAG00000008502	CPSF1	100	78.694	Chlorocebus_sabaeus
ENSTNIG00000014027	cpsf1	99	80.055	ENSCPBG00000018910	CPSF1	96	80.208	Chrysemys_picta_bellii
ENSTNIG00000014027	cpsf1	96	48.020	ENSCING00000000514	-	100	47.949	Ciona_intestinalis
ENSTNIG00000014027	cpsf1	99	48.571	ENSCSAVG00000002293	-	99	48.556	Ciona_savignyi
ENSTNIG00000014027	cpsf1	98	75.949	ENSCANG00000032760	CPSF1	100	76.606	Colobus_angolensis_palliatus
ENSTNIG00000014027	cpsf1	100	78.763	ENSCGRG00001016344	Cpsf1	100	78.694	Cricetulus_griseus_chok1gshd
ENSTNIG00000014027	cpsf1	100	76.976	ENSCGRG00000003118	Cpsf1	100	76.907	Cricetulus_griseus_crigri
ENSTNIG00000014027	cpsf1	100	86.067	ENSCSEG00000013464	cpsf1	100	86.616	Cynoglossus_semilaevis
ENSTNIG00000014027	cpsf1	85	85.727	ENSCVAG00000014059	cpsf1	100	77.982	Cyprinodon_variegatus
ENSTNIG00000014027	cpsf1	100	86.164	ENSDARG00000034178	cpsf1	100	86.233	Danio_rerio
ENSTNIG00000014027	cpsf1	57	81.897	ENSDNOG00000043654	CPSF1	94	81.897	Dasypus_novemcinctus
ENSTNIG00000014027	cpsf1	97	78.719	ENSDORG00000006278	Cpsf1	99	78.932	Dipodomys_ordii
ENSTNIG00000014027	cpsf1	100	44.326	FBgn0024698	Cpsf160	99	44.482	Drosophila_melanogaster
ENSTNIG00000014027	cpsf1	80	82.550	ENSETEG00000006022	CPSF1	83	82.550	Echinops_telfairi
ENSTNIG00000014027	cpsf1	100	78.738	ENSEASG00005010774	CPSF1	100	78.944	Equus_asinus_asinus
ENSTNIG00000014027	cpsf1	100	78.601	ENSECAG00000022209	CPSF1	100	78.807	Equus_caballus
ENSTNIG00000014027	cpsf1	100	78.464	ENSEEUG00000000471	CPSF1	100	78.395	Erinaceus_europaeus
ENSTNIG00000014027	cpsf1	100	84.129	ENSELUG00000012271	cpsf1	100	84.196	Esox_lucius
ENSTNIG00000014027	cpsf1	100	78.969	ENSFDAG00000016060	CPSF1	100	78.900	Fukomys_damarensis
ENSTNIG00000014027	cpsf1	100	87.201	ENSFHEG00000016801	cpsf1	100	87.201	Fundulus_heteroclitus
ENSTNIG00000014027	cpsf1	100	85.724	ENSGMOG00000000796	cpsf1	100	86.136	Gadus_morhua
ENSTNIG00000014027	cpsf1	96	85.351	ENSGAFG00000018890	cpsf1	100	85.725	Gambusia_affinis
ENSTNIG00000014027	cpsf1	100	89.049	ENSGACG00000008703	cpsf1	100	89.049	Gasterosteus_aculeatus
ENSTNIG00000014027	cpsf1	100	77.276	ENSGAGG00000004276	CPSF1	98	81.442	Gopherus_agassizii
ENSTNIG00000014027	cpsf1	100	78.419	ENSGGOG00000016185	CPSF1	100	78.763	Gorilla_gorilla
ENSTNIG00000014027	cpsf1	100	90.103	ENSHBUG00000018900	cpsf1	100	90.103	Haplochromis_burtoni
ENSTNIG00000014027	cpsf1	100	78.832	ENSHGLG00000016139	CPSF1	100	78.763	Heterocephalus_glaber_female
ENSTNIG00000014027	cpsf1	100	78.763	ENSHGLG00100009750	CPSF1	100	78.694	Heterocephalus_glaber_male
ENSTNIG00000014027	cpsf1	100	86.158	ENSHCOG00000018509	cpsf1	100	86.226	Hippocampus_comes
ENSTNIG00000014027	cpsf1	100	81.750	ENSIPUG00000011259	cpsf1	100	81.750	Ictalurus_punctatus
ENSTNIG00000014027	cpsf1	97	78.319	ENSSTOG00000009957	CPSF1	99	78.430	Ictidomys_tridecemlineatus
ENSTNIG00000014027	cpsf1	100	78.625	ENSJJAG00000023002	Cpsf1	100	78.557	Jaculus_jaculus
ENSTNIG00000014027	cpsf1	91	91.277	ENSKMAG00000001940	cpsf1	99	91.277	Kryptolebias_marmoratus
ENSTNIG00000014027	cpsf1	100	87.256	ENSLBEG00000003601	cpsf1	100	87.458	Labrus_bergylta
ENSTNIG00000014027	cpsf1	92	73.823	ENSLACG00000000233	CPSF1	97	73.713	Latimeria_chalumnae
ENSTNIG00000014027	cpsf1	100	82.136	ENSLOCG00000008484	cpsf1	100	82.478	Lepisosteus_oculatus
ENSTNIG00000014027	cpsf1	97	78.738	ENSLAFG00000022601	CPSF1	100	78.738	Loxodonta_africana
ENSTNIG00000014027	cpsf1	100	78.419	ENSMFAG00000037013	CPSF1	100	78.625	Macaca_fascicularis
ENSTNIG00000014027	cpsf1	100	78.419	ENSMMUG00000007380	CPSF1	100	78.625	Macaca_mulatta
ENSTNIG00000014027	cpsf1	97	78.932	ENSMNEG00000043564	CPSF1	99	79.146	Macaca_nemestrina
ENSTNIG00000014027	cpsf1	100	78.419	ENSMLEG00000043010	CPSF1	100	78.625	Mandrillus_leucophaeus
ENSTNIG00000014027	cpsf1	100	88.964	ENSMAMG00000003803	cpsf1	100	88.964	Mastacembelus_armatus
ENSTNIG00000014027	cpsf1	100	86.667	ENSMZEG00005001168	cpsf1	100	86.667	Maylandia_zebra
ENSTNIG00000014027	cpsf1	100	78.832	ENSMAUG00000003601	Cpsf1	100	78.763	Mesocricetus_auratus
ENSTNIG00000014027	cpsf1	100	78.763	ENSMICG00000015767	CPSF1	100	78.694	Microcebus_murinus
ENSTNIG00000014027	cpsf1	100	78.419	ENSMOCG00000022758	Cpsf1	100	78.351	Microtus_ochrogaster
ENSTNIG00000014027	cpsf1	100	89.842	ENSMMOG00000021245	cpsf1	100	89.911	Mola_mola
ENSTNIG00000014027	cpsf1	100	78.811	ENSMODG00000010755	CPSF1	100	78.947	Monodelphis_domestica
ENSTNIG00000014027	cpsf1	100	88.814	ENSMALG00000020545	cpsf1	100	88.881	Monopterus_albus
ENSTNIG00000014027	cpsf1	100	78.969	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.900	Mus_caroli
ENSTNIG00000014027	cpsf1	100	78.900	ENSMUSG00000034022	Cpsf1	100	78.832	Mus_musculus
ENSTNIG00000014027	cpsf1	100	78.969	MGP_PahariEiJ_G0019946	Cpsf1	100	78.900	Mus_pahari
ENSTNIG00000014027	cpsf1	100	78.900	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.832	Mus_spretus
ENSTNIG00000014027	cpsf1	94	79.017	ENSMPUG00000006419	CPSF1	93	79.544	Mustela_putorius_furo
ENSTNIG00000014027	cpsf1	100	78.380	ENSNGAG00000022460	Cpsf1	100	78.312	Nannospalax_galili
ENSTNIG00000014027	cpsf1	100	84.304	ENSNBRG00000000813	cpsf1	100	84.304	Neolamprologus_brichardi
ENSTNIG00000014027	cpsf1	86	66.964	ENSNLEG00000010633	-	94	83.648	Nomascus_leucogenys
ENSTNIG00000014027	cpsf1	82	83.721	ENSMEUG00000014922	CPSF1	85	83.721	Notamacropus_eugenii
ENSTNIG00000014027	cpsf1	60	87.895	ENSOPRG00000004693	-	70	87.895	Ochotona_princeps
ENSTNIG00000014027	cpsf1	100	78.900	ENSODEG00000013995	CPSF1	100	78.832	Octodon_degus
ENSTNIG00000014027	cpsf1	100	90.666	ENSONIG00000007676	cpsf1	100	90.666	Oreochromis_niloticus
ENSTNIG00000014027	cpsf1	59	75.352	ENSOANG00000010716	CPSF1	89	75.352	Ornithorhynchus_anatinus
ENSTNIG00000014027	cpsf1	100	87.542	ENSORLG00000013544	cpsf1	100	87.678	Oryzias_latipes
ENSTNIG00000014027	cpsf1	100	87.610	ENSORLG00020021693	cpsf1	100	87.745	Oryzias_latipes_hni
ENSTNIG00000014027	cpsf1	100	87.542	ENSORLG00015009979	cpsf1	100	87.678	Oryzias_latipes_hsok
ENSTNIG00000014027	cpsf1	100	86.847	ENSOMEG00000011849	cpsf1	100	86.983	Oryzias_melastigma
ENSTNIG00000014027	cpsf1	100	78.969	ENSOGAG00000000315	CPSF1	100	78.900	Otolemur_garnettii
ENSTNIG00000014027	cpsf1	100	78.488	ENSPPAG00000019280	CPSF1	100	78.832	Pan_paniscus
ENSTNIG00000014027	cpsf1	100	77.162	ENSPTRG00000051253	-	100	77.578	Pan_troglodytes
ENSTNIG00000014027	cpsf1	100	78.488	ENSPTRG00000049288	-	100	78.832	Pan_troglodytes
ENSTNIG00000014027	cpsf1	97	78.932	ENSPANG00000015005	CPSF1	99	79.146	Papio_anubis
ENSTNIG00000014027	cpsf1	100	85.783	ENSPKIG00000002582	cpsf1	100	86.077	Paramormyrops_kingsleyae
ENSTNIG00000014027	cpsf1	100	78.947	ENSPCIG00000009035	CPSF1	100	79.084	Phascolarctos_cinereus
ENSTNIG00000014027	cpsf1	100	86.725	ENSPFOG00000012870	cpsf1	100	86.792	Poecilia_formosa
ENSTNIG00000014027	cpsf1	100	86.465	ENSPREG00000016307	cpsf1	100	86.734	Poecilia_reticulata
ENSTNIG00000014027	cpsf1	100	71.703	ENSPPYG00000018973	CPSF1	100	71.497	Pongo_abelii
ENSTNIG00000014027	cpsf1	91	82.486	ENSPCAG00000011541	CPSF1	94	82.486	Procavia_capensis
ENSTNIG00000014027	cpsf1	100	75.411	ENSPCOG00000020001	CPSF1	100	76.147	Propithecus_coquereli
ENSTNIG00000014027	cpsf1	91	85.795	ENSPVAG00000006761	CPSF1	90	85.714	Pteropus_vampyrus
ENSTNIG00000014027	cpsf1	100	89.091	ENSPNYG00000004906	cpsf1	100	89.091	Pundamilia_nyererei
ENSTNIG00000014027	cpsf1	100	80.521	ENSPNAG00000024395	cpsf1	100	80.521	Pygocentrus_nattereri
ENSTNIG00000014027	cpsf1	100	78.832	ENSRNOG00000030705	Cpsf1	100	78.763	Rattus_norvegicus
ENSTNIG00000014027	cpsf1	100	78.488	ENSRBIG00000044907	CPSF1	100	78.694	Rhinopithecus_bieti
ENSTNIG00000014027	cpsf1	100	78.557	ENSRROG00000044861	CPSF1	100	78.763	Rhinopithecus_roxellana
ENSTNIG00000014027	cpsf1	97	79.288	ENSSBOG00000027177	CPSF1	99	79.217	Saimiri_boliviensis_boliviensis
ENSTNIG00000014027	cpsf1	100	78.606	ENSSHAG00000006500	CPSF1	100	78.879	Sarcophilus_harrisii
ENSTNIG00000014027	cpsf1	100	83.687	ENSSFOG00015004606	cpsf1	100	86.449	Scleropages_formosus
ENSTNIG00000014027	cpsf1	100	88.544	ENSSMAG00000020547	cpsf1	100	88.814	Scophthalmus_maximus
ENSTNIG00000014027	cpsf1	100	89.698	ENSSDUG00000001100	cpsf1	100	89.766	Seriola_dumerili
ENSTNIG00000014027	cpsf1	100	89.629	ENSSLDG00000003619	cpsf1	100	89.629	Seriola_lalandi_dorsalis
ENSTNIG00000014027	cpsf1	89	75.840	ENSSARG00000003643	CPSF1	92	75.760	Sorex_araneus
ENSTNIG00000014027	cpsf1	96	81.487	ENSSPUG00000014396	CPSF1	99	81.487	Sphenodon_punctatus
ENSTNIG00000014027	cpsf1	100	89.091	ENSSPAG00000005349	cpsf1	100	89.293	Stegastes_partitus
ENSTNIG00000014027	cpsf1	100	77.572	ENSSSCG00000005906	CPSF1	100	77.709	Sus_scrofa
ENSTNIG00000014027	cpsf1	96	92.593	ENSTRUG00000013134	cpsf1	99	92.593	Takifugu_rubripes
ENSTNIG00000014027	cpsf1	77	73.288	ENSTBEG00000001756	CPSF1	91	73.288	Tupaia_belangeri
ENSTNIG00000014027	cpsf1	89	83.333	ENSTTRG00000001937	CPSF1	90	83.162	Tursiops_truncatus
ENSTNIG00000014027	cpsf1	97	79.093	ENSUAMG00000006476	CPSF1	98	79.022	Ursus_americanus
ENSTNIG00000014027	cpsf1	100	86.873	ENSXCOG00000003608	cpsf1	100	87.354	Xiphophorus_couchianus
ENSTNIG00000014027	cpsf1	100	86.598	ENSXMAG00000005798	cpsf1	100	86.882	Xiphophorus_maculatus