EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000014443 (Gene tree)
Gene ID: -
Gene Symbol: prdm9
Alias: zgc:63970
Full Name: PR domain containing 9
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2788 bases
Position: chr2:909772-912559
Accession: ZDB-GENE-040426-1319
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	1	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	2	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	3	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	4	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	5	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	6	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	7	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	8	9
ENSTNIP00000017462	zf-C2H2	PF00096.26	2.5e-53	9	9
ENSTNIP00000017462	zf-met	PF12874.7	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000017682	-	2265	-	ENSTNIP00000017462	754 (aa)	-	H3DAC1

Gene Model

Click here to download ENSTNIG00000014443's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000014443's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000014443	prdm9	64	33.333	ENSTNIG00000005479	-	99	33.333
ENSTNIG00000014443	prdm9	63	37.229	ENSTNIG00000000330	-	100	37.662
ENSTNIG00000014443	prdm9	78	38.415	ENSTNIG00000008242	-	100	38.415
ENSTNIG00000014443	prdm9	65	44.578	ENSTNIG00000000277	-	97	44.578
ENSTNIG00000014443	prdm9	53	34.868	ENSTNIG00000010722	GZF1	61	34.868
ENSTNIG00000014443	prdm9	66	32.841	ENSTNIG00000002344	-	99	32.841
ENSTNIG00000014443	prdm9	65	33.028	ENSTNIG00000002343	-	83	33.028
ENSTNIG00000014443	prdm9	63	40.426	ENSTNIG00000000726	znf384l	55	37.363
ENSTNIG00000014443	prdm9	77	34.564	ENSTNIG00000018984	-	99	34.564
ENSTNIG00000014443	prdm9	64	38.554	ENSTNIG00000000320	-	99	43.030
ENSTNIG00000014443	prdm9	88	37.063	ENSTNIG00000008194	prdm14	86	37.063
ENSTNIG00000014443	prdm9	65	33.455	ENSTNIG00000005856	-	99	33.455
ENSTNIG00000014443	prdm9	75	35.780	ENSTNIG00000001921	-	91	35.780
ENSTNIG00000014443	prdm9	67	34.385	ENSTNIG00000008200	-	100	34.545
ENSTNIG00000014443	prdm9	65	32.243	ENSTNIG00000011367	znf710b	52	32.243
ENSTNIG00000014443	prdm9	78	40.741	ENSTNIG00000001164	ZNF628	98	40.741
ENSTNIG00000014443	prdm9	64	42.241	ENSTNIG00000003979	-	99	38.037
ENSTNIG00000014443	prdm9	80	38.532	ENSTNIG00000008100	-	100	38.532
ENSTNIG00000014443	prdm9	78	31.613	ENSTNIG00000011188	-	98	31.833
ENSTNIG00000014443	prdm9	64	47.222	ENSTNIG00000005023	-	99	47.222

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000014443	prdm9	100	50.197	ENSGMOG00000015143	-	100	50.197	Gadus_morhua