EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000014973 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 2768 bases
Position: chr2:9861800-9864567
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000018022	Smg4_UPF3	PF03467.15	3.5e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000018246	-	1131	-	ENSTNIP00000018022	377 (aa)	-	H3DBX9

Gene Model

Click here to download ENSTNIG00000014973's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000014973's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000014973	upf3a	99	45.619	ENSTNIG00000015763	upf3b	88	45.876

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000014973	upf3a	99	52.261	ENSG00000169062	UPF3A	83	52.369	Homo_sapiens
ENSTNIG00000014973	upf3a	99	42.657	ENSAPOG00000012775	upf3b	89	46.944	Acanthochromis_polyacanthus
ENSTNIG00000014973	upf3a	100	76.904	ENSAPOG00000013484	upf3a	84	77.411	Acanthochromis_polyacanthus
ENSTNIG00000014973	upf3a	100	51.358	ENSAMEG00000004259	UPF3A	88	50.743	Ailuropoda_melanoleuca
ENSTNIG00000014973	upf3a	98	43.552	ENSAMEG00000000163	UPF3B	84	44.527	Ailuropoda_melanoleuca
ENSTNIG00000014973	upf3a	100	73.012	ENSACIG00000020468	upf3a	79	83.051	Amphilophus_citrinellus
ENSTNIG00000014973	upf3a	73	49.495	ENSAOCG00000000706	upf3b	88	46.814	Amphiprion_ocellaris
ENSTNIG00000014973	upf3a	100	77.157	ENSAOCG00000020784	upf3a	83	77.665	Amphiprion_ocellaris
ENSTNIG00000014973	upf3a	65	52.416	ENSAPEG00000005545	upf3b	89	47.188	Amphiprion_percula
ENSTNIG00000014973	upf3a	100	77.157	ENSAPEG00000003519	upf3a	83	77.665	Amphiprion_percula
ENSTNIG00000014973	upf3a	100	76.904	ENSATEG00000005843	upf3a	83	77.411	Anabas_testudineus
ENSTNIG00000014973	upf3a	99	45.742	ENSATEG00000018742	upf3b	88	44.310	Anabas_testudineus
ENSTNIG00000014973	upf3a	98	45.411	ENSACAG00000003625	UPF3B	85	46.599	Anolis_carolinensis
ENSTNIG00000014973	upf3a	95	57.812	ENSACAG00000001540	UPF3A	91	58.854	Anolis_carolinensis
ENSTNIG00000014973	upf3a	99	48.058	ENSANAG00000021713	UPF3A	83	49.398	Aotus_nancymaae
ENSTNIG00000014973	upf3a	98	42.424	ENSANAG00000025598	-	65	68.116	Aotus_nancymaae
ENSTNIG00000014973	upf3a	100	73.786	ENSACLG00000026274	upf3a	84	74.272	Astatotilapia_calliptera
ENSTNIG00000014973	upf3a	100	72.589	ENSAMXG00000002608	upf3a	85	73.096	Astyanax_mexicanus
ENSTNIG00000014973	upf3a	99	50.754	ENSCJAG00000019102	UPF3A	83	50.873	Callithrix_jacchus
ENSTNIG00000014973	upf3a	98	43.382	ENSCJAG00000004975	UPF3B	77	66.061	Callithrix_jacchus
ENSTNIG00000014973	upf3a	100	43.855	ENSCAFG00000018426	UPF3B	86	44.089	Canis_familiaris
ENSTNIG00000014973	upf3a	99	50.246	ENSCAFG00000006504	UPF3A	85	50.000	Canis_familiaris
ENSTNIG00000014973	upf3a	99	50.860	ENSCAFG00020014268	UPF3A	83	50.249	Canis_lupus_dingo
ENSTNIG00000014973	upf3a	99	49.005	ENSCHIG00000008682	UPF3A	79	48.889	Capra_hircus
ENSTNIG00000014973	upf3a	98	34.574	ENSCHIG00000011454	-	84	33.943	Capra_hircus
ENSTNIG00000014973	upf3a	85	44.476	ENSTSYG00000001918	UPF3A	94	44.193	Carlito_syrichta
ENSTNIG00000014973	upf3a	87	49.856	ENSCPOG00000006824	UPF3A	80	49.568	Cavia_porcellus
ENSTNIG00000014973	upf3a	99	50.995	ENSCCAG00000018406	UPF3A	83	51.117	Cebus_capucinus
ENSTNIG00000014973	upf3a	97	35.602	ENSCCAG00000029813	-	84	36.340	Cebus_capucinus
ENSTNIG00000014973	upf3a	99	52.273	ENSCATG00000029733	UPF3A	83	52.381	Cercocebus_atys
ENSTNIG00000014973	upf3a	99	51.351	ENSCSAG00000017388	UPF3A	83	51.220	Chlorocebus_sabaeus
ENSTNIG00000014973	upf3a	95	48.429	ENSCGRG00001017387	Upf3a	87	49.189	Cricetulus_griseus_chok1gshd
ENSTNIG00000014973	upf3a	95	48.429	ENSCGRG00000001468	Upf3a	87	49.189	Cricetulus_griseus_crigri
ENSTNIG00000014973	upf3a	97	45.939	ENSCSEG00000002046	upf3b	84	47.277	Cynoglossus_semilaevis
ENSTNIG00000014973	upf3a	100	76.396	ENSCSEG00000005106	upf3a	84	76.904	Cynoglossus_semilaevis
ENSTNIG00000014973	upf3a	97	42.356	ENSCVAG00000005030	upf3b	88	43.424	Cyprinodon_variegatus
ENSTNIG00000014973	upf3a	100	75.127	ENSCVAG00000022333	upf3a	83	75.381	Cyprinodon_variegatus
ENSTNIG00000014973	upf3a	99	72.519	ENSDARG00000069297	upf3a	85	73.028	Danio_rerio
ENSTNIG00000014973	upf3a	92	54.201	ENSDNOG00000034391	UPF3A	83	53.763	Dasypus_novemcinctus
ENSTNIG00000014973	upf3a	99	47.236	ENSETEG00000010110	UPF3A	83	46.883	Echinops_telfairi
ENSTNIG00000014973	upf3a	98	44.039	ENSEASG00005012919	UPF3B	69	69.565	Equus_asinus_asinus
ENSTNIG00000014973	upf3a	100	50.249	ENSEASG00005021884	UPF3A	83	50.000	Equus_asinus_asinus
ENSTNIG00000014973	upf3a	100	50.868	ENSECAG00000017141	UPF3A	83	50.000	Equus_caballus
ENSTNIG00000014973	upf3a	98	44.039	ENSECAG00000016947	UPF3B	69	62.857	Equus_caballus
ENSTNIG00000014973	upf3a	62	51.550	ENSELUG00000020389	upf3b	88	43.427	Esox_lucius
ENSTNIG00000014973	upf3a	99	71.178	ENSELUG00000011050	upf3a	84	71.679	Esox_lucius
ENSTNIG00000014973	upf3a	100	52.605	ENSFCAG00000014602	UPF3A	83	52.605	Felis_catus
ENSTNIG00000014973	upf3a	82	63.855	ENSGMOG00000019615	upf3a	100	61.111	Gadus_morhua
ENSTNIG00000014973	upf3a	59	52.653	ENSGMOG00000001621	upf3b	86	43.521	Gadus_morhua
ENSTNIG00000014973	upf3a	100	73.858	ENSGAFG00000021170	upf3a	83	74.365	Gambusia_affinis
ENSTNIG00000014973	upf3a	58	52.893	ENSGACG00000017435	upf3b	88	43.171	Gasterosteus_aculeatus
ENSTNIG00000014973	upf3a	82	64.634	ENSGACG00000001972	upf3a	100	62.994	Gasterosteus_aculeatus
ENSTNIG00000014973	upf3a	98	43.382	ENSGAGG00000001219	UPF3B	86	44.938	Gopherus_agassizii
ENSTNIG00000014973	upf3a	96	45.407	ENSGGOG00000041219	-	85	45.407	Gorilla_gorilla
ENSTNIG00000014973	upf3a	97	45.170	ENSGGOG00000043074	-	81	44.327	Gorilla_gorilla
ENSTNIG00000014973	upf3a	99	52.261	ENSGGOG00000015428	UPF3A	83	52.468	Gorilla_gorilla
ENSTNIG00000014973	upf3a	100	77.157	ENSHBUG00000011325	upf3a	83	77.665	Haplochromis_burtoni
ENSTNIG00000014973	upf3a	90	50.281	ENSHGLG00000001544	UPF3A	82	50.435	Heterocephalus_glaber_female
ENSTNIG00000014973	upf3a	90	50.281	ENSHGLG00100013244	UPF3A	82	50.435	Heterocephalus_glaber_male
ENSTNIG00000014973	upf3a	99	73.057	ENSHCOG00000013985	upf3a	71	87.500	Hippocampus_comes
ENSTNIG00000014973	upf3a	99	45.074	ENSHCOG00000017004	upf3b	88	44.526	Hippocampus_comes
ENSTNIG00000014973	upf3a	100	72.589	ENSIPUG00000023450	upf3a	85	73.096	Ictalurus_punctatus
ENSTNIG00000014973	upf3a	99	43.645	ENSKMAG00000020300	upf3b	89	43.341	Kryptolebias_marmoratus
ENSTNIG00000014973	upf3a	100	75.696	ENSKMAG00000004381	upf3a	83	76.203	Kryptolebias_marmoratus
ENSTNIG00000014973	upf3a	60	52.209	ENSLBEG00000028689	upf3b	55	52.209	Labrus_bergylta
ENSTNIG00000014973	upf3a	100	78.329	ENSLBEG00000021570	upf3a	84	78.590	Labrus_bergylta
ENSTNIG00000014973	upf3a	68	43.492	ENSLACG00000006645	UPF3A	66	82.143	Latimeria_chalumnae
ENSTNIG00000014973	upf3a	100	66.584	ENSLOCG00000002665	upf3a	85	66.832	Lepisosteus_oculatus
ENSTNIG00000014973	upf3a	96	50.250	ENSLAFG00000023358	UPF3A	93	50.000	Loxodonta_africana
ENSTNIG00000014973	upf3a	98	44.529	ENSLAFG00000001267	UPF3B	83	44.301	Loxodonta_africana
ENSTNIG00000014973	upf3a	96	50.781	ENSMFAG00000045016	UPF3A	80	51.872	Macaca_fascicularis
ENSTNIG00000014973	upf3a	95	52.116	ENSMMUG00000007449	UPF3A	83	52.480	Macaca_mulatta
ENSTNIG00000014973	upf3a	96	52.083	ENSMNEG00000036402	UPF3A	78	52.344	Macaca_nemestrina
ENSTNIG00000014973	upf3a	96	51.562	ENSMLEG00000014726	UPF3A	88	51.823	Mandrillus_leucophaeus
ENSTNIG00000014973	upf3a	100	74.390	ENSMAMG00000018364	upf3a	84	74.634	Mastacembelus_armatus
ENSTNIG00000014973	upf3a	100	73.786	ENSMZEG00005021571	upf3a	84	74.272	Maylandia_zebra
ENSTNIG00000014973	upf3a	89	59.167	ENSMGAG00000014837	UPF3A	89	59.444	Meleagris_gallopavo
ENSTNIG00000014973	upf3a	62	59.600	ENSMOCG00000000550	Upf3a	57	67.822	Microtus_ochrogaster
ENSTNIG00000014973	upf3a	100	74.209	ENSMMOG00000019751	upf3a	84	74.696	Mola_mola
ENSTNIG00000014973	upf3a	97	43.766	ENSMMOG00000004183	upf3b	88	44.853	Mola_mola
ENSTNIG00000014973	upf3a	97	42.643	ENSMODG00000010232	UPF3B	93	42.893	Monodelphis_domestica
ENSTNIG00000014973	upf3a	97	58.869	ENSMODG00000003159	UPF3A	90	60.513	Monodelphis_domestica
ENSTNIG00000014973	upf3a	95	50.000	MGP_CAROLIEiJ_G0030848	Upf3a	87	51.099	Mus_caroli
ENSTNIG00000014973	upf3a	95	49.476	ENSMUSG00000038398	Upf3a	87	49.865	Mus_musculus
ENSTNIG00000014973	upf3a	95	50.785	MGP_PahariEiJ_G0021311	Upf3a	87	50.404	Mus_pahari
ENSTNIG00000014973	upf3a	98	43.489	MGP_PahariEiJ_G0031543	Upf3b	84	43.532	Mus_pahari
ENSTNIG00000014973	upf3a	95	49.215	MGP_SPRETEiJ_G0031958	Upf3a	87	50.674	Mus_spretus
ENSTNIG00000014973	upf3a	100	51.250	ENSMPUG00000009139	UPF3A	82	51.000	Mustela_putorius_furo
ENSTNIG00000014973	upf3a	96	52.792	ENSMLUG00000015905	UPF3A	92	53.046	Myotis_lucifugus
ENSTNIG00000014973	upf3a	86	52.174	ENSNGAG00000019314	Upf3a	79	51.497	Nannospalax_galili
ENSTNIG00000014973	upf3a	100	76.904	ENSNBRG00000000828	upf3a	83	77.411	Neolamprologus_brichardi
ENSTNIG00000014973	upf3a	99	52.513	ENSNLEG00000007563	UPF3A	83	52.618	Nomascus_leucogenys
ENSTNIG00000014973	upf3a	100	76.515	ENSONIG00000006817	upf3a	83	77.020	Oreochromis_niloticus
ENSTNIG00000014973	upf3a	92	47.554	ENSOANG00000006985	-	95	47.978	Ornithorhynchus_anatinus
ENSTNIG00000014973	upf3a	96	43.309	ENSOANG00000002594	-	93	44.913	Ornithorhynchus_anatinus
ENSTNIG00000014973	upf3a	96	47.397	ENSOCUG00000008450	UPF3A	82	45.455	Oryctolagus_cuniculus
ENSTNIG00000014973	upf3a	97	40.931	ENSORLG00000001026	upf3b	89	44.282	Oryzias_latipes
ENSTNIG00000014973	upf3a	99	71.646	ENSORLG00000010911	upf3a	83	71.899	Oryzias_latipes
ENSTNIG00000014973	upf3a	99	70.844	ENSORLG00020014317	upf3a	83	71.611	Oryzias_latipes_hni
ENSTNIG00000014973	upf3a	97	41.667	ENSORLG00020003758	upf3b	89	44.282	Oryzias_latipes_hni
ENSTNIG00000014973	upf3a	97	40.686	ENSORLG00015012954	upf3b	89	44.039	Oryzias_latipes_hsok
ENSTNIG00000014973	upf3a	58	52.697	ENSOMEG00000014736	upf3b	88	45.679	Oryzias_melastigma
ENSTNIG00000014973	upf3a	100	73.096	ENSOMEG00000014425	upf3a	84	73.350	Oryzias_melastigma
ENSTNIG00000014973	upf3a	98	41.728	ENSOGAG00000033003	-	86	43.350	Otolemur_garnettii
ENSTNIG00000014973	upf3a	87	52.286	ENSOGAG00000004788	UPF3A	84	52.571	Otolemur_garnettii
ENSTNIG00000014973	upf3a	98	36.870	ENSOARG00000007869	-	92	37.067	Ovis_aries
ENSTNIG00000014973	upf3a	100	51.493	ENSOARG00000009004	UPF3A	84	51.493	Ovis_aries
ENSTNIG00000014973	upf3a	99	52.261	ENSPPAG00000042267	UPF3A	84	52.369	Pan_paniscus
ENSTNIG00000014973	upf3a	100	52.605	ENSPPRG00000025062	UPF3A	83	52.605	Panthera_pardus
ENSTNIG00000014973	upf3a	99	52.261	ENSPTRG00000006073	UPF3A	83	52.369	Pan_troglodytes
ENSTNIG00000014973	upf3a	96	44.845	ENSPTRG00000041187	-	86	45.238	Pan_troglodytes
ENSTNIG00000014973	upf3a	96	45.600	ENSPTRG00000041835	-	85	45.040	Pan_troglodytes
ENSTNIG00000014973	upf3a	96	42.895	ENSPTRG00000051640	-	85	42.895	Pan_troglodytes
ENSTNIG00000014973	upf3a	100	52.261	ENSPANG00000004346	UPF3A	83	52.513	Papio_anubis
ENSTNIG00000014973	upf3a	97	66.580	ENSPKIG00000004422	upf3a	91	62.103	Paramormyrops_kingsleyae
ENSTNIG00000014973	upf3a	98	44.717	ENSPKIG00000019226	upf3b	75	74.359	Paramormyrops_kingsleyae
ENSTNIG00000014973	upf3a	96	59.481	ENSPSIG00000007468	UPF3A	93	59.740	Pelodiscus_sinensis
ENSTNIG00000014973	upf3a	100	71.807	ENSPMGG00000012696	upf3a	84	72.289	Periophthalmus_magnuspinnatus
ENSTNIG00000014973	upf3a	95	49.606	ENSPEMG00000019968	-	87	50.541	Peromyscus_maniculatus_bairdii
ENSTNIG00000014973	upf3a	75	81.609	ENSPCIG00000019590	-	69	81.609	Phascolarctos_cinereus
ENSTNIG00000014973	upf3a	98	43.108	ENSPCIG00000028914	UPF3B	84	43.035	Phascolarctos_cinereus
ENSTNIG00000014973	upf3a	100	74.112	ENSPFOG00000013222	upf3a	83	74.619	Poecilia_formosa
ENSTNIG00000014973	upf3a	100	72.843	ENSPLAG00000011960	upf3a	85	74.112	Poecilia_latipinna
ENSTNIG00000014973	upf3a	100	71.186	ENSPMEG00000000836	upf3a	84	71.671	Poecilia_mexicana
ENSTNIG00000014973	upf3a	99	52.261	ENSPPYG00000005536	UPF3A	83	52.369	Pongo_abelii
ENSTNIG00000014973	upf3a	64	48.249	ENSPCAG00000013124	UPF3A	54	47.692	Procavia_capensis
ENSTNIG00000014973	upf3a	98	48.995	ENSPVAG00000005656	UPF3A	81	47.704	Pteropus_vampyrus
ENSTNIG00000014973	upf3a	100	73.786	ENSPNYG00000011289	upf3a	84	74.272	Pundamilia_nyererei
ENSTNIG00000014973	upf3a	100	73.350	ENSPNAG00000019532	upf3a	85	73.858	Pygocentrus_nattereri
ENSTNIG00000014973	upf3a	98	44.254	ENSPNAG00000021528	upf3b	88	45.652	Pygocentrus_nattereri
ENSTNIG00000014973	upf3a	85	51.026	ENSRNOG00000017397	Upf3a	81	52.212	Rattus_norvegicus
ENSTNIG00000014973	upf3a	99	50.636	ENSRBIG00000034007	UPF3A	88	51.000	Rhinopithecus_bieti
ENSTNIG00000014973	upf3a	96	51.697	ENSRROG00000012212	UPF3A	80	51.958	Rhinopithecus_roxellana
ENSTNIG00000014973	upf3a	98	43.171	ENSSBOG00000019740	UPF3B	78	67.485	Saimiri_boliviensis_boliviensis
ENSTNIG00000014973	upf3a	86	49.003	ENSSBOG00000029989	UPF3A	79	49.288	Saimiri_boliviensis_boliviensis
ENSTNIG00000014973	upf3a	96	59.585	ENSSHAG00000009895	UPF3A	91	60.465	Sarcophilus_harrisii
ENSTNIG00000014973	upf3a	97	42.786	ENSSHAG00000008634	UPF3B	83	42.537	Sarcophilus_harrisii
ENSTNIG00000014973	upf3a	100	61.266	ENSSFOG00015021851	upf3a	84	62.698	Scleropages_formosus
ENSTNIG00000014973	upf3a	63	52.692	ENSSFOG00015005614	upf3b	88	43.447	Scleropages_formosus
ENSTNIG00000014973	upf3a	97	71.960	ENSSMAG00000003858	upf3a	72	85.185	Scophthalmus_maximus
ENSTNIG00000014973	upf3a	59	54.251	ENSSMAG00000012913	upf3b	86	43.873	Scophthalmus_maximus
ENSTNIG00000014973	upf3a	99	77.660	ENSSDUG00000009680	upf3a	71	90.435	Seriola_dumerili
ENSTNIG00000014973	upf3a	99	77.863	ENSSLDG00000009700	upf3a	83	78.372	Seriola_lalandi_dorsalis
ENSTNIG00000014973	upf3a	95	42.969	ENSSARG00000007262	UPF3A	92	43.490	Sorex_araneus
ENSTNIG00000014973	upf3a	100	76.923	ENSSPAG00000007938	upf3a	80	86.034	Stegastes_partitus
ENSTNIG00000014973	upf3a	58	55.833	ENSSPAG00000009989	upf3b	88	46.535	Stegastes_partitus
ENSTNIG00000014973	upf3a	97	51.786	ENSSSCG00000024679	UPF3A	78	51.786	Sus_scrofa
ENSTNIG00000014973	upf3a	96	46.193	ENSTGUG00000003413	UPF3B	93	45.340	Taeniopygia_guttata
ENSTNIG00000014973	upf3a	99	59.343	ENSTGUG00000009493	UPF3A	99	59.596	Taeniopygia_guttata
ENSTNIG00000014973	upf3a	99	81.170	ENSTRUG00000012730	upf3a	84	82.234	Takifugu_rubripes
ENSTNIG00000014973	upf3a	73	43.390	ENSTBEG00000017186	-	95	42.333	Tupaia_belangeri
ENSTNIG00000014973	upf3a	86	47.851	ENSTTRG00000015414	UPF3A	73	48.138	Tursiops_truncatus
ENSTNIG00000014973	upf3a	96	50.781	ENSVPAG00000003525	UPF3A	94	50.777	Vicugna_pacos
ENSTNIG00000014973	upf3a	98	50.750	ENSVVUG00000013538	UPF3A	78	49.873	Vulpes_vulpes
ENSTNIG00000014973	upf3a	97	45.865	ENSXETG00000007440	upf3b	84	61.616	Xenopus_tropicalis
ENSTNIG00000014973	upf3a	99	55.190	ENSXETG00000002572	upf3a	91	55.190	Xenopus_tropicalis
ENSTNIG00000014973	upf3a	100	74.365	ENSXMAG00000013452	upf3a	83	74.873	Xiphophorus_maculatus