EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000015763 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2315 bases
Position: chr1:4336734-4339048
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000018839	Smg4_UPF3	PF03467.15	5.2e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000019067	-	1275	-	ENSTNIP00000018839	424 (aa)	-	H3DE96

Gene Model

Click here to download ENSTNIG00000015763's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000015763's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000015763	upf3b	88	45.876	ENSTNIG00000014973	upf3a	99	45.619

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000015763	upf3b	56	60.000	ENSG00000125351	UPF3B	96	65.728	Homo_sapiens
ENSTNIG00000015763	upf3b	100	66.883	ENSAPOG00000012775	upf3b	100	69.481	Acanthochromis_polyacanthus
ENSTNIG00000015763	upf3b	95	43.709	ENSAMEG00000004259	UPF3A	90	46.620	Ailuropoda_melanoleuca
ENSTNIG00000015763	upf3b	98	51.606	ENSAMEG00000000163	UPF3B	94	53.437	Ailuropoda_melanoleuca
ENSTNIG00000015763	upf3b	100	62.179	ENSACIG00000013582	upf3b	99	67.452	Amphilophus_citrinellus
ENSTNIG00000015763	upf3b	100	65.000	ENSAOCG00000000706	upf3b	100	67.965	Amphiprion_ocellaris
ENSTNIG00000015763	upf3b	100	66.304	ENSAPEG00000005545	upf3b	100	69.264	Amphiprion_percula
ENSTNIG00000015763	upf3b	100	65.451	ENSATEG00000018742	upf3b	100	68.026	Anabas_testudineus
ENSTNIG00000015763	upf3b	95	53.020	ENSACAG00000003625	UPF3B	94	54.260	Anolis_carolinensis
ENSTNIG00000015763	upf3b	85	48.485	ENSACAG00000001540	UPF3A	92	48.232	Anolis_carolinensis
ENSTNIG00000015763	upf3b	90	52.311	ENSANAG00000025598	-	73	73.077	Aotus_nancymaae
ENSTNIG00000015763	upf3b	90	54.589	ENSANAG00000021894	-	80	73.563	Aotus_nancymaae
ENSTNIG00000015763	upf3b	100	64.009	ENSACLG00000001649	upf3b	100	67.888	Astatotilapia_calliptera
ENSTNIG00000015763	upf3b	90	54.589	ENSCJAG00000004975	UPF3B	97	65.094	Callithrix_jacchus
ENSTNIG00000015763	upf3b	98	51.599	ENSCAFG00000018426	UPF3B	96	53.863	Canis_familiaris
ENSTNIG00000015763	upf3b	98	48.180	ENSCAFG00020004074	UPF3B	89	60.331	Canis_lupus_dingo
ENSTNIG00000015763	upf3b	93	51.474	ENSCHIG00000000247	-	94	52.155	Capra_hircus
ENSTNIG00000015763	upf3b	93	40.821	ENSCHIG00000011454	-	90	40.000	Capra_hircus
ENSTNIG00000015763	upf3b	93	51.474	ENSCHIG00000018011	-	89	54.695	Capra_hircus
ENSTNIG00000015763	upf3b	93	52.103	ENSTSYG00000014690	UPF3B	96	61.009	Carlito_syrichta
ENSTNIG00000015763	upf3b	86	42.268	ENSCCAG00000029813	-	53	59.877	Cebus_capucinus
ENSTNIG00000015763	upf3b	56	60.000	ENSCATG00000017506	UPF3B	97	65.566	Cercocebus_atys
ENSTNIG00000015763	upf3b	62	56.169	ENSCLAG00000003260	UPF3B	97	52.146	Chinchilla_lanigera
ENSTNIG00000015763	upf3b	94	49.318	ENSCPBG00000020685	UPF3B	93	49.885	Chrysemys_picta_bellii
ENSTNIG00000015763	upf3b	65	54.723	ENSCGRG00001013643	-	82	57.237	Cricetulus_griseus_chok1gshd
ENSTNIG00000015763	upf3b	87	52.357	ENSCGRG00001006858	-	84	53.980	Cricetulus_griseus_chok1gshd
ENSTNIG00000015763	upf3b	86	52.381	ENSCGRG00000007627	Upf3b	94	54.020	Cricetulus_griseus_crigri
ENSTNIG00000015763	upf3b	94	63.741	ENSCSEG00000002046	upf3b	99	63.333	Cynoglossus_semilaevis
ENSTNIG00000015763	upf3b	100	61.853	ENSCVAG00000005030	upf3b	99	65.801	Cyprinodon_variegatus
ENSTNIG00000015763	upf3b	94	58.447	ENSDARG00000000489	upf3b	95	60.491	Danio_rerio
ENSTNIG00000015763	upf3b	90	52.693	ENSDNOG00000008665	UPF3B	87	54.225	Dasypus_novemcinctus
ENSTNIG00000015763	upf3b	95	50.773	ENSDORG00000006077	Upf3b	94	52.655	Dipodomys_ordii
ENSTNIG00000015763	upf3b	92	39.858	ENSETEG00000010110	UPF3A	87	40.139	Echinops_telfairi
ENSTNIG00000015763	upf3b	93	52.719	ENSEASG00005012919	UPF3B	89	58.261	Equus_asinus_asinus
ENSTNIG00000015763	upf3b	93	52.719	ENSECAG00000016947	UPF3B	94	52.360	Equus_caballus
ENSTNIG00000015763	upf3b	100	52.058	ENSELUG00000020389	upf3b	100	58.642	Esox_lucius
ENSTNIG00000015763	upf3b	93	53.613	ENSFCAG00000004388	UPF3B	89	54.907	Felis_catus
ENSTNIG00000015763	upf3b	94	48.326	ENSFALG00000001569	UPF3B	94	51.464	Ficedula_albicollis
ENSTNIG00000015763	upf3b	98	51.178	ENSFDAG00000018869	UPF3B	97	52.361	Fukomys_damarensis
ENSTNIG00000015763	upf3b	100	62.876	ENSFHEG00000017895	upf3b	100	65.806	Fundulus_heteroclitus
ENSTNIG00000015763	upf3b	94	61.098	ENSGMOG00000001621	upf3b	97	62.771	Gadus_morhua
ENSTNIG00000015763	upf3b	94	51.754	ENSGALG00000008618	UPF3B	94	54.185	Gallus_gallus
ENSTNIG00000015763	upf3b	100	62.771	ENSGAFG00000000829	upf3b	100	66.161	Gambusia_affinis
ENSTNIG00000015763	upf3b	100	62.876	ENSGACG00000017435	upf3b	100	66.524	Gasterosteus_aculeatus
ENSTNIG00000015763	upf3b	97	53.930	ENSGAGG00000001219	UPF3B	96	54.048	Gopherus_agassizii
ENSTNIG00000015763	upf3b	56	60.000	ENSGGOG00000023995	UPF3B	98	52.137	Gorilla_gorilla
ENSTNIG00000015763	upf3b	86	41.927	ENSGGOG00000041219	-	87	41.476	Gorilla_gorilla
ENSTNIG00000015763	upf3b	86	37.084	ENSGGOG00000043074	-	81	41.432	Gorilla_gorilla
ENSTNIG00000015763	upf3b	100	64.009	ENSHBUG00000017393	upf3b	100	67.888	Haplochromis_burtoni
ENSTNIG00000015763	upf3b	66	49.359	ENSHGLG00000011189	-	83	52.661	Heterocephalus_glaber_female
ENSTNIG00000015763	upf3b	95	51.991	ENSHGLG00000019582	-	94	53.215	Heterocephalus_glaber_female
ENSTNIG00000015763	upf3b	95	47.788	ENSHGLG00100002042	-	94	51.106	Heterocephalus_glaber_male
ENSTNIG00000015763	upf3b	77	44.568	ENSHGLG00100001889	-	83	51.541	Heterocephalus_glaber_male
ENSTNIG00000015763	upf3b	100	60.560	ENSHCOG00000017004	upf3b	100	62.017	Hippocampus_comes
ENSTNIG00000015763	upf3b	100	56.559	ENSIPUG00000019249	upf3b	100	59.570	Ictalurus_punctatus
ENSTNIG00000015763	upf3b	95	46.421	ENSSTOG00000001101	UPF3B	94	53.201	Ictidomys_tridecemlineatus
ENSTNIG00000015763	upf3b	62	55.137	ENSJJAG00000000053	Upf3b	86	54.237	Jaculus_jaculus
ENSTNIG00000015763	upf3b	100	66.594	ENSKMAG00000020300	upf3b	99	69.348	Kryptolebias_marmoratus
ENSTNIG00000015763	upf3b	58	68.214	ENSLBEG00000028689	upf3b	57	73.864	Labrus_bergylta
ENSTNIG00000015763	upf3b	100	47.718	ENSLACG00000008691	UPF3B	100	53.320	Latimeria_chalumnae
ENSTNIG00000015763	upf3b	95	59.276	ENSLOCG00000015238	upf3b	97	62.217	Lepisosteus_oculatus
ENSTNIG00000015763	upf3b	94	53.089	ENSLAFG00000001267	UPF3B	90	54.503	Loxodonta_africana
ENSTNIG00000015763	upf3b	56	59.630	ENSMFAG00000045414	UPF3B	97	65.566	Macaca_fascicularis
ENSTNIG00000015763	upf3b	56	59.630	ENSMMUG00000020222	UPF3B	97	65.566	Macaca_mulatta
ENSTNIG00000015763	upf3b	56	59.630	ENSMNEG00000039794	UPF3B	97	65.566	Macaca_nemestrina
ENSTNIG00000015763	upf3b	56	60.000	ENSMLEG00000010999	UPF3B	97	65.566	Mandrillus_leucophaeus
ENSTNIG00000015763	upf3b	100	64.224	ENSMZEG00005007871	upf3b	100	68.103	Maylandia_zebra
ENSTNIG00000015763	upf3b	77	51.648	ENSMGAG00000007728	UPF3B	91	54.420	Meleagris_gallopavo
ENSTNIG00000015763	upf3b	85	46.482	ENSMGAG00000014837	UPF3A	95	45.729	Meleagris_gallopavo
ENSTNIG00000015763	upf3b	89	50.121	ENSMAUG00000008705	Upf3b	86	52.311	Mesocricetus_auratus
ENSTNIG00000015763	upf3b	90	49.883	ENSMOCG00000017893	Upf3b	87	53.380	Microtus_ochrogaster
ENSTNIG00000015763	upf3b	100	63.261	ENSMMOG00000004183	upf3b	99	67.974	Mola_mola
ENSTNIG00000015763	upf3b	89	48.792	ENSMODG00000003159	UPF3A	94	48.434	Monodelphis_domestica
ENSTNIG00000015763	upf3b	87	53.350	ENSMODG00000010232	UPF3B	93	55.473	Monodelphis_domestica
ENSTNIG00000015763	upf3b	100	63.519	ENSMALG00000008042	upf3b	99	67.527	Monopterus_albus
ENSTNIG00000015763	upf3b	89	50.976	MGP_CAROLIEiJ_G0032999	Upf3b	93	47.154	Mus_caroli
ENSTNIG00000015763	upf3b	94	48.894	ENSMUSG00000036572	Upf3b	93	50.889	Mus_musculus
ENSTNIG00000015763	upf3b	94	49.115	MGP_PahariEiJ_G0031543	Upf3b	93	50.889	Mus_pahari
ENSTNIG00000015763	upf3b	94	48.894	MGP_SPRETEiJ_G0034152	Upf3b	93	50.889	Mus_spretus
ENSTNIG00000015763	upf3b	93	52.927	ENSMPUG00000001531	UPF3B	96	53.215	Mustela_putorius_furo
ENSTNIG00000015763	upf3b	95	44.196	ENSMPUG00000009139	UPF3A	88	45.205	Mustela_putorius_furo
ENSTNIG00000015763	upf3b	90	51.932	ENSMLUG00000010821	UPF3B	86	56.068	Myotis_lucifugus
ENSTNIG00000015763	upf3b	86	42.394	ENSMLUG00000015905	UPF3A	93	46.633	Myotis_lucifugus
ENSTNIG00000015763	upf3b	95	48.559	ENSNGAG00000008231	Upf3b	86	53.511	Nannospalax_galili
ENSTNIG00000015763	upf3b	62	56.997	ENSNLEG00000014897	UPF3B	90	54.186	Nomascus_leucogenys
ENSTNIG00000015763	upf3b	73	75.159	ENSMEUG00000015615	UPF3B	75	75.000	Notamacropus_eugenii
ENSTNIG00000015763	upf3b	95	50.000	ENSODEG00000002186	-	94	52.000	Octodon_degus
ENSTNIG00000015763	upf3b	100	63.326	ENSONIG00000002536	upf3b	100	67.804	Oreochromis_niloticus
ENSTNIG00000015763	upf3b	95	46.639	ENSOCUG00000010213	UPF3B	94	52.146	Oryctolagus_cuniculus
ENSTNIG00000015763	upf3b	92	46.101	ENSORLG00000010911	upf3a	88	48.000	Oryzias_latipes
ENSTNIG00000015763	upf3b	100	61.039	ENSORLG00000001026	upf3b	100	64.286	Oryzias_latipes
ENSTNIG00000015763	upf3b	100	60.390	ENSORLG00020003758	upf3b	100	64.502	Oryzias_latipes_hni
ENSTNIG00000015763	upf3b	92	43.632	ENSORLG00020014317	upf3a	88	45.708	Oryzias_latipes_hni
ENSTNIG00000015763	upf3b	100	61.039	ENSORLG00015012954	upf3b	100	64.286	Oryzias_latipes_hsok
ENSTNIG00000015763	upf3b	100	61.957	ENSOMEG00000014736	upf3b	100	65.584	Oryzias_melastigma
ENSTNIG00000015763	upf3b	95	48.132	ENSOGAG00000033003	-	89	53.846	Otolemur_garnettii
ENSTNIG00000015763	upf3b	93	51.126	ENSOARG00000016051	-	94	51.820	Ovis_aries
ENSTNIG00000015763	upf3b	90	46.782	ENSOARG00000007869	-	95	46.269	Ovis_aries
ENSTNIG00000015763	upf3b	56	60.000	ENSPPAG00000040390	UPF3B	98	52.137	Pan_paniscus
ENSTNIG00000015763	upf3b	93	51.049	ENSPPRG00000023536	UPF3B	89	55.140	Panthera_pardus
ENSTNIG00000015763	upf3b	93	50.340	ENSPTIG00000015264	UPF3B	90	52.643	Panthera_tigris_altaica
ENSTNIG00000015763	upf3b	89	35.396	ENSPTRG00000051640	-	90	38.903	Pan_troglodytes
ENSTNIG00000015763	upf3b	56	60.000	ENSPTRG00000022228	UPF3B	98	52.137	Pan_troglodytes
ENSTNIG00000015763	upf3b	56	60.000	ENSPANG00000000900	UPF3B	97	65.566	Papio_anubis
ENSTNIG00000015763	upf3b	100	55.292	ENSPKIG00000019226	upf3b	93	77.778	Paramormyrops_kingsleyae
ENSTNIG00000015763	upf3b	54	53.962	ENSPSIG00000005833	UPF3B	94	53.558	Pelodiscus_sinensis
ENSTNIG00000015763	upf3b	85	49.620	ENSPSIG00000007468	UPF3A	94	48.861	Pelodiscus_sinensis
ENSTNIG00000015763	upf3b	58	73.946	ENSPMGG00000016067	upf3b	71	82.323	Periophthalmus_magnuspinnatus
ENSTNIG00000015763	upf3b	89	51.582	ENSPEMG00000012352	Upf3b	85	53.771	Peromyscus_maniculatus_bairdii
ENSTNIG00000015763	upf3b	75	58.854	ENSPCIG00000019590	-	76	62.791	Phascolarctos_cinereus
ENSTNIG00000015763	upf3b	100	63.203	ENSPLAG00000005105	upf3b	99	66.739	Poecilia_latipinna
ENSTNIG00000015763	upf3b	100	63.203	ENSPLAG00000019922	upf3b	99	66.739	Poecilia_latipinna
ENSTNIG00000015763	upf3b	100	62.987	ENSPMEG00000023532	upf3b	100	66.377	Poecilia_mexicana
ENSTNIG00000015763	upf3b	90	47.380	ENSPCAG00000009464	UPF3B	87	53.256	Procavia_capensis
ENSTNIG00000015763	upf3b	90	51.675	ENSPCOG00000021960	UPF3B	94	53.319	Propithecus_coquereli
ENSTNIG00000015763	upf3b	93	43.636	ENSPVAG00000014075	UPF3B	90	44.875	Pteropus_vampyrus
ENSTNIG00000015763	upf3b	100	65.152	ENSPNYG00000009846	upf3b	100	68.182	Pundamilia_nyererei
ENSTNIG00000015763	upf3b	95	60.179	ENSPNAG00000021528	upf3b	96	61.659	Pygocentrus_nattereri
ENSTNIG00000015763	upf3b	94	49.111	ENSRNOG00000039994	Upf3b	93	50.889	Rattus_norvegicus
ENSTNIG00000015763	upf3b	56	60.000	ENSRROG00000041031	UPF3B	97	65.566	Rhinopithecus_roxellana
ENSTNIG00000015763	upf3b	86	48.354	ENSRROG00000012212	UPF3A	80	47.595	Rhinopithecus_roxellana
ENSTNIG00000015763	upf3b	95	51.991	ENSSBOG00000019740	UPF3B	99	65.094	Saimiri_boliviensis_boliviensis
ENSTNIG00000015763	upf3b	91	47.754	ENSSHAG00000009895	UPF3A	98	47.642	Sarcophilus_harrisii
ENSTNIG00000015763	upf3b	87	54.975	ENSSHAG00000008634	UPF3B	95	52.632	Sarcophilus_harrisii
ENSTNIG00000015763	upf3b	100	57.298	ENSSFOG00015005614	upf3b	100	60.349	Scleropages_formosus
ENSTNIG00000015763	upf3b	92	50.485	ENSSFOG00015021851	upf3a	89	49.757	Scleropages_formosus
ENSTNIG00000015763	upf3b	100	61.194	ENSSMAG00000012913	upf3b	84	82.828	Scophthalmus_maximus
ENSTNIG00000015763	upf3b	92	45.906	ENSSDUG00000009680	upf3a	81	63.636	Seriola_dumerili
ENSTNIG00000015763	upf3b	100	65.517	ENSSDUG00000005682	upf3b	100	69.612	Seriola_dumerili
ENSTNIG00000015763	upf3b	100	65.948	ENSSLDG00000003130	upf3b	100	70.043	Seriola_lalandi_dorsalis
ENSTNIG00000015763	upf3b	89	44.836	ENSSARG00000004147	UPF3B	97	52.214	Sorex_araneus
ENSTNIG00000015763	upf3b	94	49.779	ENSSPUG00000013082	UPF3B	94	51.429	Sphenodon_punctatus
ENSTNIG00000015763	upf3b	99	66.958	ENSSPAG00000009989	upf3b	99	69.499	Stegastes_partitus
ENSTNIG00000015763	upf3b	90	53.753	ENSSSCG00000012617	UPF3B	86	55.932	Sus_scrofa
ENSTNIG00000015763	upf3b	87	49.754	ENSTGUG00000009493	UPF3A	99	48.768	Taeniopygia_guttata
ENSTNIG00000015763	upf3b	86	54.613	ENSTGUG00000003413	UPF3B	93	56.359	Taeniopygia_guttata
ENSTNIG00000015763	upf3b	100	81.319	ENSTRUG00000010645	upf3b	99	83.040	Takifugu_rubripes
ENSTNIG00000015763	upf3b	56	59.195	ENSTBEG00000003229	UPF3B	63	59.091	Tupaia_belangeri
ENSTNIG00000015763	upf3b	98	48.802	ENSUAMG00000024565	UPF3B	89	57.391	Ursus_americanus
ENSTNIG00000015763	upf3b	90	45.763	ENSUMAG00000002150	UPF3B	85	52.868	Ursus_maritimus
ENSTNIG00000015763	upf3b	85	45.663	ENSVPAG00000003525	UPF3A	94	46.954	Vicugna_pacos
ENSTNIG00000015763	upf3b	81	51.795	ENSVPAG00000009971	UPF3B	93	53.213	Vicugna_pacos
ENSTNIG00000015763	upf3b	98	47.966	ENSVVUG00000011594	UPF3B	97	65.421	Vulpes_vulpes
ENSTNIG00000015763	upf3b	94	48.741	ENSXETG00000007440	upf3b	85	71.859	Xenopus_tropicalis
ENSTNIG00000015763	upf3b	87	45.522	ENSXETG00000002572	upf3a	91	44.140	Xenopus_tropicalis
ENSTNIG00000015763	upf3b	100	57.143	ENSXCOG00000016586	upf3b	95	83.916	Xiphophorus_couchianus
ENSTNIG00000015763	upf3b	100	61.472	ENSXMAG00000013680	upf3b	100	64.859	Xiphophorus_maculatus