EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000016164 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 7292 bases
Position: chr7:7933145-7940436
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000019255	EST1	PF10374.9	2.5e-13	1	1
ENSTNIP00000019255	EST1_DNA_bind	PF10373.9	9.4e-61	1	1
ENSTNIP00000019255	PIN_4	PF13638.6	2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000019484	-	4368	-	ENSTNIP00000019255	1455 (aa)	-	H3DFG1

Gene Model

Click here to download ENSTNIG00000016164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000016164's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000016164	smg6	100	50.529	ENSG00000070366	SMG6	100	60.037	Homo_sapiens
ENSTNIG00000016164	smg6	100	79.106	ENSAPOG00000019448	smg6	93	78.571	Acanthochromis_polyacanthus
ENSTNIG00000016164	smg6	100	50.000	ENSAMEG00000007632	SMG6	100	49.934	Ailuropoda_melanoleuca
ENSTNIG00000016164	smg6	93	75.259	ENSACIG00000012997	smg6	98	69.786	Amphilophus_citrinellus
ENSTNIG00000016164	smg6	100	78.637	ENSAOCG00000002630	smg6	96	75.842	Amphiprion_ocellaris
ENSTNIG00000016164	smg6	100	78.484	ENSAPEG00000019101	smg6	96	75.695	Amphiprion_percula
ENSTNIG00000016164	smg6	100	78.103	ENSATEG00000006483	smg6	91	77.901	Anabas_testudineus
ENSTNIG00000016164	smg6	87	46.024	ENSACAG00000011783	SMG6	99	46.060	Anolis_carolinensis
ENSTNIG00000016164	smg6	100	50.099	ENSANAG00000035760	SMG6	100	49.768	Aotus_nancymaae
ENSTNIG00000016164	smg6	99	78.324	ENSACLG00000005288	smg6	91	78.163	Astatotilapia_calliptera
ENSTNIG00000016164	smg6	100	50.332	ENSBTAG00000000267	SMG6	100	50.595	Bos_taurus
ENSTNIG00000016164	smg6	50	30.928	WBGene00004884	smg-6	60	31.429	Caenorhabditis_elegans
ENSTNIG00000016164	smg6	100	50.823	ENSCJAG00000001820	SMG6	100	50.165	Callithrix_jacchus
ENSTNIG00000016164	smg6	100	49.704	ENSCAFG00000019260	SMG6	100	49.505	Canis_familiaris
ENSTNIG00000016164	smg6	100	49.704	ENSCAFG00020009770	SMG6	100	49.505	Canis_lupus_dingo
ENSTNIG00000016164	smg6	100	50.000	ENSCHIG00000021998	SMG6	100	50.000	Capra_hircus
ENSTNIG00000016164	smg6	100	50.066	ENSTSYG00000003406	SMG6	100	59.665	Carlito_syrichta
ENSTNIG00000016164	smg6	89	55.658	ENSCAPG00000016197	SMG6	98	49.306	Cavia_aperea
ENSTNIG00000016164	smg6	100	49.603	ENSCPOG00000014878	SMG6	100	49.144	Cavia_porcellus
ENSTNIG00000016164	smg6	100	50.000	ENSCCAG00000035801	SMG6	100	49.669	Cebus_capucinus
ENSTNIG00000016164	smg6	100	50.297	ENSCATG00000031956	SMG6	100	49.868	Cercocebus_atys
ENSTNIG00000016164	smg6	100	49.637	ENSCLAG00000006748	SMG6	100	49.241	Chinchilla_lanigera
ENSTNIG00000016164	smg6	100	50.331	ENSCSAG00000013800	SMG6	100	49.901	Chlorocebus_sabaeus
ENSTNIG00000016164	smg6	100	50.066	ENSCPBG00000020369	SMG6	100	49.767	Chrysemys_picta_bellii
ENSTNIG00000016164	smg6	98	50.506	ENSCANG00000031764	SMG6	100	60.223	Colobus_angolensis_palliatus
ENSTNIG00000016164	smg6	55	40.811	ENSCGRG00001019595	Smg6	98	41.330	Cricetulus_griseus_chok1gshd
ENSTNIG00000016164	smg6	98	45.646	ENSCGRG00000007782	Smg6	99	46.242	Cricetulus_griseus_crigri
ENSTNIG00000016164	smg6	98	75.831	ENSCSEG00000012757	smg6	89	74.777	Cynoglossus_semilaevis
ENSTNIG00000016164	smg6	99	73.001	ENSCVAG00000012789	smg6	90	73.080	Cyprinodon_variegatus
ENSTNIG00000016164	smg6	100	59.236	ENSDARG00000100481	smg6	99	58.740	Danio_rerio
ENSTNIG00000016164	smg6	100	49.472	ENSDNOG00000048283	SMG6	100	49.636	Dasypus_novemcinctus
ENSTNIG00000016164	smg6	100	47.528	ENSDORG00000016614	Smg6	92	57.269	Dipodomys_ordii
ENSTNIG00000016164	smg6	92	90.000	ENSETEG00000016790	SMG6	93	90.000	Echinops_telfairi
ENSTNIG00000016164	smg6	65	48.223	ENSEBUG00000005059	smg6	61	47.822	Eptatretus_burgeri
ENSTNIG00000016164	smg6	99	50.364	ENSEASG00005009318	SMG6	99	50.033	Equus_asinus_asinus
ENSTNIG00000016164	smg6	99	50.364	ENSECAG00000006519	SMG6	99	50.166	Equus_caballus
ENSTNIG00000016164	smg6	100	43.092	ENSEEUG00000003493	SMG6	100	43.074	Erinaceus_europaeus
ENSTNIG00000016164	smg6	96	68.178	ENSELUG00000005934	smg6	81	69.316	Esox_lucius
ENSTNIG00000016164	smg6	100	50.362	ENSFCAG00000028817	SMG6	100	50.561	Felis_catus
ENSTNIG00000016164	smg6	90	52.524	ENSFALG00000006538	SMG6	92	52.196	Ficedula_albicollis
ENSTNIG00000016164	smg6	100	49.736	ENSFDAG00000015106	SMG6	100	49.373	Fukomys_damarensis
ENSTNIG00000016164	smg6	100	73.762	ENSFHEG00000013282	smg6	93	73.762	Fundulus_heteroclitus
ENSTNIG00000016164	smg6	61	76.077	ENSGMOG00000019077	smg6	67	76.077	Gadus_morhua
ENSTNIG00000016164	smg6	100	49.769	ENSGALG00000003108	SMG6	98	49.373	Gallus_gallus
ENSTNIG00000016164	smg6	100	72.031	ENSGAFG00000000379	smg6	91	73.412	Gambusia_affinis
ENSTNIG00000016164	smg6	90	74.455	ENSGACG00000020521	smg6	100	73.779	Gasterosteus_aculeatus
ENSTNIG00000016164	smg6	94	50.959	ENSGAGG00000025617	SMG6	99	49.221	Gopherus_agassizii
ENSTNIG00000016164	smg6	100	50.396	ENSGGOG00000017156	SMG6	100	49.934	Gorilla_gorilla
ENSTNIG00000016164	smg6	99	78.646	ENSHBUG00000021311	smg6	91	78.485	Haplochromis_burtoni
ENSTNIG00000016164	smg6	100	49.771	ENSHGLG00000012882	SMG6	100	49.770	Heterocephalus_glaber_female
ENSTNIG00000016164	smg6	100	49.705	ENSHGLG00100017815	SMG6	100	49.705	Heterocephalus_glaber_male
ENSTNIG00000016164	smg6	73	70.336	ENSHCOG00000008761	smg6	83	69.916	Hippocampus_comes
ENSTNIG00000016164	smg6	88	59.894	ENSIPUG00000012493	smg6	80	59.665	Ictalurus_punctatus
ENSTNIG00000016164	smg6	100	50.033	ENSSTOG00000028127	SMG6	100	50.033	Ictidomys_tridecemlineatus
ENSTNIG00000016164	smg6	78	45.363	ENSJJAG00000015367	Smg6	95	44.000	Jaculus_jaculus
ENSTNIG00000016164	smg6	100	73.068	ENSKMAG00000000279	smg6	96	72.566	Kryptolebias_marmoratus
ENSTNIG00000016164	smg6	100	78.998	ENSLBEG00000002184	smg6	91	78.441	Labrus_bergylta
ENSTNIG00000016164	smg6	75	64.870	ENSLOCG00000006448	smg6	79	64.192	Lepisosteus_oculatus
ENSTNIG00000016164	smg6	100	49.570	ENSLAFG00000001261	SMG6	100	49.175	Loxodonta_africana
ENSTNIG00000016164	smg6	100	50.397	ENSMFAG00000003394	SMG6	100	49.967	Macaca_fascicularis
ENSTNIG00000016164	smg6	100	50.331	ENSMMUG00000023161	SMG6	100	49.901	Macaca_mulatta
ENSTNIG00000016164	smg6	100	47.981	ENSMNEG00000044592	SMG6	100	47.878	Macaca_nemestrina
ENSTNIG00000016164	smg6	93	61.250	ENSMLEG00000029353	SMG6	99	61.071	Mandrillus_leucophaeus
ENSTNIG00000016164	smg6	100	80.527	ENSMAMG00000020119	smg6	98	75.255	Mastacembelus_armatus
ENSTNIG00000016164	smg6	99	78.145	ENSMZEG00005024736	smg6	91	77.984	Maylandia_zebra
ENSTNIG00000016164	smg6	100	50.364	ENSMICG00000012913	SMG6	100	50.033	Microcebus_murinus
ENSTNIG00000016164	smg6	100	51.194	ENSMODG00000010622	SMG6	100	50.725	Monodelphis_domestica
ENSTNIG00000016164	smg6	100	79.190	ENSMALG00000001106	smg6	91	78.475	Monopterus_albus
ENSTNIG00000016164	smg6	100	49.339	MGP_CAROLIEiJ_G0016729	Smg6	92	68.373	Mus_caroli
ENSTNIG00000016164	smg6	100	49.375	ENSMUSG00000038290	Smg6	92	68.072	Mus_musculus
ENSTNIG00000016164	smg6	100	48.945	MGP_PahariEiJ_G0017866	Smg6	92	67.771	Mus_pahari
ENSTNIG00000016164	smg6	100	49.309	MGP_SPRETEiJ_G0017572	Smg6	92	67.771	Mus_spretus
ENSTNIG00000016164	smg6	100	50.395	ENSMPUG00000013046	SMG6	100	50.263	Mustela_putorius_furo
ENSTNIG00000016164	smg6	100	50.328	ENSMLUG00000005739	SMG6	100	50.000	Myotis_lucifugus
ENSTNIG00000016164	smg6	98	50.034	ENSNGAG00000007287	Smg6	99	49.865	Nannospalax_galili
ENSTNIG00000016164	smg6	96	74.595	ENSNBRG00000009511	smg6	100	65.519	Neolamprologus_brichardi
ENSTNIG00000016164	smg6	98	50.305	ENSNLEG00000017171	SMG6	100	60.037	Nomascus_leucogenys
ENSTNIG00000016164	smg6	90	52.612	ENSMEUG00000015804	SMG6	92	52.139	Notamacropus_eugenii
ENSTNIG00000016164	smg6	57	65.775	ENSOPRG00000000579	SMG6	79	65.957	Ochotona_princeps
ENSTNIG00000016164	smg6	100	44.752	ENSODEG00000008038	SMG6	100	44.298	Octodon_degus
ENSTNIG00000016164	smg6	98	78.324	ENSONIG00000005594	smg6	100	70.992	Oreochromis_niloticus
ENSTNIG00000016164	smg6	100	49.603	ENSOCUG00000013018	SMG6	100	49.270	Oryctolagus_cuniculus
ENSTNIG00000016164	smg6	100	71.856	ENSORLG00000003317	smg6	92	71.889	Oryzias_latipes
ENSTNIG00000016164	smg6	100	71.528	ENSORLG00020015343	smg6	93	70.575	Oryzias_latipes_hni
ENSTNIG00000016164	smg6	100	71.747	ENSORLG00015020454	smg6	93	71.407	Oryzias_latipes_hsok
ENSTNIG00000016164	smg6	100	70.223	ENSOMEG00000010838	smg6	95	70.602	Oryzias_melastigma
ENSTNIG00000016164	smg6	100	49.967	ENSOGAG00000004483	SMG6	100	49.606	Otolemur_garnettii
ENSTNIG00000016164	smg6	99	50.232	ENSOARG00000015076	SMG6	99	51.085	Ovis_aries
ENSTNIG00000016164	smg6	100	50.132	ENSPPAG00000043296	SMG6	100	49.669	Pan_paniscus
ENSTNIG00000016164	smg6	100	50.296	ENSPPRG00000014581	SMG6	100	50.495	Panthera_pardus
ENSTNIG00000016164	smg6	97	50.778	ENSPTIG00000008925	SMG6	100	60.223	Panthera_tigris_altaica
ENSTNIG00000016164	smg6	100	50.462	ENSPTRG00000008544	SMG6	100	60.037	Pan_troglodytes
ENSTNIG00000016164	smg6	100	50.395	ENSPANG00000024588	SMG6	100	49.967	Papio_anubis
ENSTNIG00000016164	smg6	90	46.964	ENSPSIG00000006660	SMG6	98	46.672	Pelodiscus_sinensis
ENSTNIG00000016164	smg6	100	66.076	ENSPMGG00000000844	smg6	100	65.802	Periophthalmus_magnuspinnatus
ENSTNIG00000016164	smg6	100	50.133	ENSPEMG00000020707	Smg6	93	57.269	Peromyscus_maniculatus_bairdii
ENSTNIG00000016164	smg6	100	72.770	ENSPFOG00000012035	smg6	100	67.140	Poecilia_formosa
ENSTNIG00000016164	smg6	100	71.385	ENSPLAG00000017660	smg6	95	72.456	Poecilia_latipinna
ENSTNIG00000016164	smg6	100	72.379	ENSPMEG00000000258	smg6	95	72.456	Poecilia_mexicana
ENSTNIG00000016164	smg6	100	71.254	ENSPREG00000010066	smg6	95	72.324	Poecilia_reticulata
ENSTNIG00000016164	smg6	100	46.746	ENSPPYG00000007790	SMG6	100	46.398	Pongo_abelii
ENSTNIG00000016164	smg6	96	61.663	ENSPCAG00000000552	SMG6	100	47.600	Procavia_capensis
ENSTNIG00000016164	smg6	100	50.132	ENSPCOG00000020925	SMG6	100	50.166	Propithecus_coquereli
ENSTNIG00000016164	smg6	83	52.150	ENSPVAG00000002159	SMG6	72	55.842	Pteropus_vampyrus
ENSTNIG00000016164	smg6	92	75.000	ENSPNYG00000024151	smg6	100	65.254	Pundamilia_nyererei
ENSTNIG00000016164	smg6	97	59.742	ENSPNAG00000015480	smg6	89	58.629	Pygocentrus_nattereri
ENSTNIG00000016164	smg6	100	49.501	ENSRNOG00000003041	Smg6	92	68.675	Rattus_norvegicus
ENSTNIG00000016164	smg6	100	50.066	ENSRBIG00000024746	SMG6	100	49.735	Rhinopithecus_bieti
ENSTNIG00000016164	smg6	100	50.099	ENSRROG00000030423	SMG6	100	60.223	Rhinopithecus_roxellana
ENSTNIG00000016164	smg6	100	49.835	ENSSBOG00000022518	SMG6	100	48.114	Saimiri_boliviensis_boliviensis
ENSTNIG00000016164	smg6	98	50.569	ENSSHAG00000010045	SMG6	98	50.033	Sarcophilus_harrisii
ENSTNIG00000016164	smg6	89	59.595	ENSSFOG00015005436	smg6	76	59.707	Scleropages_formosus
ENSTNIG00000016164	smg6	100	77.427	ENSSMAG00000019777	smg6	92	76.810	Scophthalmus_maximus
ENSTNIG00000016164	smg6	99	82.006	ENSSDUG00000016412	smg6	88	82.324	Seriola_dumerili
ENSTNIG00000016164	smg6	90	80.984	ENSSLDG00000020747	smg6	86	80.278	Seriola_lalandi_dorsalis
ENSTNIG00000016164	smg6	99	49.634	ENSSPUG00000007152	SMG6	99	49.467	Sphenodon_punctatus
ENSTNIG00000016164	smg6	100	79.048	ENSSPAG00000015633	smg6	95	77.636	Stegastes_partitus
ENSTNIG00000016164	smg6	100	50.066	ENSSSCG00000017826	SMG6	100	49.836	Sus_scrofa
ENSTNIG00000016164	smg6	100	50.463	ENSTGUG00000005836	SMG6	100	49.703	Taeniopygia_guttata
ENSTNIG00000016164	smg6	100	77.785	ENSTRUG00000000358	smg6	100	77.315	Takifugu_rubripes
ENSTNIG00000016164	smg6	100	47.521	ENSTBEG00000011424	SMG6	100	47.164	Tupaia_belangeri
ENSTNIG00000016164	smg6	91	57.287	ENSTTRG00000001175	SMG6	91	57.431	Tursiops_truncatus
ENSTNIG00000016164	smg6	100	50.461	ENSUAMG00000025152	SMG6	100	50.066	Ursus_americanus
ENSTNIG00000016164	smg6	97	50.645	ENSUMAG00000009306	SMG6	99	50.579	Ursus_maritimus
ENSTNIG00000016164	smg6	84	88.889	ENSVPAG00000000225	SMG6	88	88.889	Vicugna_pacos
ENSTNIG00000016164	smg6	100	50.066	ENSVVUG00000021727	SMG6	100	50.274	Vulpes_vulpes
ENSTNIG00000016164	smg6	98	46.333	ENSXETG00000023799	SMG6	99	46.295	Xenopus_tropicalis
ENSTNIG00000016164	smg6	98	70.770	ENSXCOG00000009867	smg6	90	72.351	Xiphophorus_couchianus
ENSTNIG00000016164	smg6	100	72.471	ENSXMAG00000010321	smg6	91	73.569	Xiphophorus_maculatus