EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTNIG00000016199 (Gene tree)
Gene ID
-
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Tetraodon_nigroviridis
Status
putative
Strand
Minus strand
Length
14118 bases
Position
chr16:3493277-3507394
Accession
ZDB-GENE-030912-3
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTNIP00000000566tRNA_anti-codonPF01336.252.9e-1111
ENSTNIP00000019291tRNA_anti-codonPF01336.252.9e-1111
ENSTNIP00000003428tRNA_anti-codonPF01336.252.9e-1111
ENSTNIP00000019292tRNA_anti-codonPF01336.252.9e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTNIT00000000753-2349-ENSTNIP00000000566612 (aa)-H3BX53
ENSTNIT00000019520-2349-ENSTNIP00000019291612 (aa)-H3DFJ7
ENSTNIT00000019521-2352-ENSTNIP00000019292613 (aa)-H3DFJ8
ENSTNIT00000003412-2352-ENSTNIP00000003428613 (aa)-H3C5A9
Gene Model
Click here to download ENSTNIG00000016199's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000016199's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTNIG00000016199rpa19958.814ENSTNIG00000016167RPA19959.473
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTNIG00000016199rpa19666.739ENSAPOG00000019409RPA18967.391Acanthochromis_polyacanthus
ENSTNIG00000016199rpa19983.170ENSAPOG00000011658rpa110083.007Acanthochromis_polyacanthus
ENSTNIG00000016199rpa19963.047ENSAMEG00000007706RPA19963.047Ailuropoda_melanoleuca
ENSTNIG00000016199rpa19562.415ENSACIG00000012881RPA19962.309Amphilophus_citrinellus
ENSTNIG00000016199rpa19676.239ENSACIG00000007277rpa19975.980Amphilophus_citrinellus
ENSTNIG00000016199rpa19959.014ENSAOCG00000009003RPA19959.259Amphiprion_ocellaris
ENSTNIG00000016199rpa19983.170ENSAOCG00000023376rpa110083.007Amphiprion_ocellaris
ENSTNIG00000016199rpa19983.497ENSAPEG00000008634rpa110083.333Amphiprion_percula
ENSTNIG00000016199rpa19957.530ENSAPEG00000019132RPA19957.508Amphiprion_percula
ENSTNIG00000016199rpa19583.276ENSATEG00000022024rpa110083.103Anabas_testudineus
ENSTNIG00000016199rpa19959.722ENSATEG00000006443RPA19959.722Anabas_testudineus
ENSTNIG00000016199rpa19854.345ENSAPLG00000012442RPA19954.963Anas_platyrhynchos
ENSTNIG00000016199rpa19957.938ENSACAG00000014490RPA19957.212Anolis_carolinensis
ENSTNIG00000016199rpa19665.159ENSANAG00000023456RPA19865.159Aotus_nancymaae
ENSTNIG00000016199rpa19483.101ENSACLG00000006640rpa19982.927Astatotilapia_calliptera
ENSTNIG00000016199rpa19962.264ENSACLG00000005223RPA19962.264Astatotilapia_calliptera
ENSTNIG00000016199rpa19975.493ENSAMXG00000008418rpa19975.822Astyanax_mexicanus
ENSTNIG00000016199rpa19963.785ENSBTAG00000009711RPA19963.785Bos_taurus
ENSTNIG00000016199rpa19962.582ENSCJAG00000001848RPA19963.328Callithrix_jacchus
ENSTNIG00000016199rpa19965.309ENSCAFG00000019249RPA19965.309Canis_familiaris
ENSTNIG00000016199rpa19965.309ENSCAFG00020009847RPA19965.309Canis_lupus_dingo
ENSTNIG00000016199rpa19964.111ENSCHIG00000026308RPA19964.274Capra_hircus
ENSTNIG00000016199rpa19963.636ENSTSYG00000003482-9963.328Carlito_syrichta
ENSTNIG00000016199rpa19964.228ENSCPOG00000000035RPA19964.228Cavia_porcellus
ENSTNIG00000016199rpa19953.548ENSCCAG00000010981RPA19954.281Cebus_capucinus
ENSTNIG00000016199rpa19964.390ENSCLAG00000005185-9964.390Chinchilla_lanigera
ENSTNIG00000016199rpa19960.976ENSCLAG00000015045-9960.813Chinchilla_lanigera
ENSTNIG00000016199rpa19954.295ENSCSAG00000013833RPA19954.545Chlorocebus_sabaeus
ENSTNIG00000016199rpa17170.252ENSCHOG00000009454-9970.413Choloepus_hoffmanni
ENSTNIG00000016199rpa19563.220ENSCHOG00000013540-9963.220Choloepus_hoffmanni
ENSTNIG00000016199rpa19965.416ENSCPBG00000020377RPA19966.084Chrysemys_picta_bellii
ENSTNIG00000016199rpa19945.840ENSCING00000023482-9945.172Ciona_intestinalis
ENSTNIG00000016199rpa19863.289ENSCANG00000030911RPA19963.289Colobus_angolensis_palliatus
ENSTNIG00000016199rpa19964.610ENSCGRG00001008197Rpa19964.773Cricetulus_griseus_chok1gshd
ENSTNIG00000016199rpa18165.815ENSCGRG00000000582Rpa19966.012Cricetulus_griseus_crigri
ENSTNIG00000016199rpa19956.051ENSCSEG00000012726RPA19957.118Cynoglossus_semilaevis
ENSTNIG00000016199rpa19978.084ENSCSEG00000013066rpa110077.670Cynoglossus_semilaevis
ENSTNIG00000016199rpa19981.981ENSCVAG00000019431rpa110082.168Cyprinodon_variegatus
ENSTNIG00000016199rpa19557.298ENSCVAG00000013446-9657.099Cyprinodon_variegatus
ENSTNIG00000016199rpa110073.529ENSDARG00000003938rpa110073.529Danio_rerio
ENSTNIG00000016199rpa19964.379ENSDNOG00000017218RPA19964.379Dasypus_novemcinctus
ENSTNIG00000016199rpa19963.961ENSDORG00000006199Rpa19963.695Dipodomys_ordii
ENSTNIG00000016199rpa19942.971FBgn0010173RpA-709943.291Drosophila_melanogaster
ENSTNIG00000016199rpa18274.227ENSETEG00000017608RPA18274.227Echinops_telfairi
ENSTNIG00000016199rpa19864.191ENSEASG00005009372RPA19964.410Equus_asinus_asinus
ENSTNIG00000016199rpa19964.437ENSECAG00000023886RPA19964.437Equus_caballus
ENSTNIG00000016199rpa16869.690ENSEEUG00000002186-6869.690Erinaceus_europaeus
ENSTNIG00000016199rpa19978.896ENSELUG00000021071rpa19978.803Esox_lucius
ENSTNIG00000016199rpa18860.773ENSELUG00000006136RPA19960.773Esox_lucius
ENSTNIG00000016199rpa19964.448ENSFCAG00000006306RPA19964.448Felis_catus
ENSTNIG00000016199rpa19963.474ENSFALG00000006575RPA19963.799Ficedula_albicollis
ENSTNIG00000016199rpa19965.309ENSFDAG00000007720RPA19965.309Fukomys_damarensis
ENSTNIG00000016199rpa19982.488ENSFHEG00000003580rpa110082.219Fundulus_heteroclitus
ENSTNIG00000016199rpa19974.587ENSGMOG00000010382rpa19974.587Gadus_morhua
ENSTNIG00000016199rpa19962.397ENSGALG00000003072RPA19962.500Gallus_gallus
ENSTNIG00000016199rpa19959.265ENSGAFG00000020953RPA19958.548Gambusia_affinis
ENSTNIG00000016199rpa19981.803ENSGAFG00000012916rpa110081.373Gambusia_affinis
ENSTNIG00000016199rpa19980.033ENSGACG00000010856rpa110079.772Gasterosteus_aculeatus
ENSTNIG00000016199rpa19965.090ENSGAGG00000013611RPA19965.090Gopherus_agassizii
ENSTNIG00000016199rpa19964.039ENSGGOG00000014186RPA19963.725Gorilla_gorilla
ENSTNIG00000016199rpa19556.902ENSHBUG00000009348RPA19856.734Haplochromis_burtoni
ENSTNIG00000016199rpa19985.550ENSHBUG00000017773rpa19985.270Haplochromis_burtoni
ENSTNIG00000016199rpa19964.821ENSHGLG00000008846RPA19964.984Heterocephalus_glaber_female
ENSTNIG00000016199rpa19964.821ENSHGLG00100017755-9964.984Heterocephalus_glaber_male
ENSTNIG00000016199rpa19961.238ENSHGLG00100000799-9961.238Heterocephalus_glaber_male
ENSTNIG00000016199rpa19955.484ENSHGLG00100002005-9955.735Heterocephalus_glaber_male
ENSTNIG00000016199rpa19976.221ENSHCOG00000001401rpa110076.059Hippocampus_comes
ENSTNIG00000016199rpa19944.935ENSHCOG00000000351RPA19844.715Hippocampus_comes
ENSTNIG00000016199rpa19974.836ENSIPUG00000004400rpa19974.836Ictalurus_punctatus
ENSTNIG00000016199rpa19362.181ENSSTOG00000022475RPA19762.181Ictidomys_tridecemlineatus
ENSTNIG00000016199rpa19665.203ENSJJAG00000000876Rpa19865.034Jaculus_jaculus
ENSTNIG00000016199rpa19977.903ENSKMAG00000005605rpa110078.525Kryptolebias_marmoratus
ENSTNIG00000016199rpa19960.362ENSKMAG00000000234RPA19960.261Kryptolebias_marmoratus
ENSTNIG00000016199rpa19968.707ENSLBEG00000002281RPA19167.316Labrus_bergylta
ENSTNIG00000016199rpa19984.729ENSLBEG00000021604rpa19984.565Labrus_bergylta
ENSTNIG00000016199rpa18162.874ENSLACG00000007210RPA19962.675Latimeria_chalumnae
ENSTNIG00000016199rpa19971.686ENSLOCG00000006397rpa19971.686Lepisosteus_oculatus
ENSTNIG00000016199rpa19962.862ENSLAFG00000015354RPA19962.862Loxodonta_africana
ENSTNIG00000016199rpa18261.858ENSMFAG00000036138-9962.178Macaca_fascicularis
ENSTNIG00000016199rpa19959.121ENSMMUG00000002442-9959.380Macaca_mulatta
ENSTNIG00000016199rpa19964.039ENSMMUG00000011604-9964.345Macaca_mulatta
ENSTNIG00000016199rpa19064.256ENSMNEG00000029837-9964.968Macaca_nemestrina
ENSTNIG00000016199rpa19962.500ENSMNEG00000031632-9962.764Macaca_nemestrina
ENSTNIG00000016199rpa19860.461ENSMLEG00000038768-9960.826Mandrillus_leucophaeus
ENSTNIG00000016199rpa19986.230ENSMAMG00000017993rpa110085.784Mastacembelus_armatus
ENSTNIG00000016199rpa19957.015ENSMAMG00000020097RPA19956.886Mastacembelus_armatus
ENSTNIG00000016199rpa19962.264ENSMZEG00005024731RPA19962.264Maylandia_zebra
ENSTNIG00000016199rpa19985.222ENSMZEG00005007551rpa19984.943Maylandia_zebra
ENSTNIG00000016199rpa19962.211ENSMGAG00000005315RPA19862.211Meleagris_gallopavo
ENSTNIG00000016199rpa19764.226ENSMAUG00000010474Rpa19964.618Mesocricetus_auratus
ENSTNIG00000016199rpa19964.286ENSMICG00000012867RPA19964.286Microcebus_murinus
ENSTNIG00000016199rpa19964.379ENSMOCG00000013019Rpa19964.321Microtus_ochrogaster
ENSTNIG00000016199rpa19861.794ENSMMOG00000010868RPA19867.048Mola_mola
ENSTNIG00000016199rpa19981.699ENSMMOG00000014292rpa19983.756Mola_mola
ENSTNIG00000016199rpa19964.401ENSMODG00000010549RPA19964.401Monodelphis_domestica
ENSTNIG00000016199rpa19969.005ENSMALG00000001208RPA18768.778Monopterus_albus
ENSTNIG00000016199rpa19984.918ENSMALG00000011453rpa110084.967Monopterus_albus
ENSTNIG00000016199rpa19963.902MGP_CAROLIEiJ_G0016734Rpa19964.495Mus_caroli
ENSTNIG00000016199rpa19962.480ENSMUSG00000000751Rpa19963.065Mus_musculus
ENSTNIG00000016199rpa19964.007MGP_PahariEiJ_G0017871Rpa19964.344Mus_pahari
ENSTNIG00000016199rpa19962.540MGP_SPRETEiJ_G0017577Rpa19963.124Mus_spretus
ENSTNIG00000016199rpa19964.553ENSMPUG00000013119RPA19964.553Mustela_putorius_furo
ENSTNIG00000016199rpa19962.520ENSMLUG00000006113RPA19962.520Myotis_lucifugus
ENSTNIG00000016199rpa19963.209ENSNGAG00000004522Rpa19663.209Nannospalax_galili
ENSTNIG00000016199rpa19860.033ENSNBRG00000009672RPA19760.033Neolamprologus_brichardi
ENSTNIG00000016199rpa19482.986ENSNBRG00000020595rpa19982.699Neolamprologus_brichardi
ENSTNIG00000016199rpa19963.961ENSNLEG00000017149RPA19964.032Nomascus_leucogenys
ENSTNIG00000016199rpa19756.333ENSMEUG00000006714RPA19956.333Notamacropus_eugenii
ENSTNIG00000016199rpa19664.167ENSODEG00000009038RPA19764.393Octodon_degus
ENSTNIG00000016199rpa19985.808ENSONIG00000013135rpa19985.644Oreochromis_niloticus
ENSTNIG00000016199rpa19865.347ENSOANG00000010880RPA19965.182Ornithorhynchus_anatinus
ENSTNIG00000016199rpa19962.422ENSOCUG00000001504RPA19962.422Oryctolagus_cuniculus
ENSTNIG00000016199rpa19957.863ENSORLG00000003368RPA19957.863Oryzias_latipes
ENSTNIG00000016199rpa19981.250ENSORLG00000004856rpa19981.086Oryzias_latipes
ENSTNIG00000016199rpa19981.579ENSORLG00020008980rpa19981.414Oryzias_latipes_hni
ENSTNIG00000016199rpa19957.014ENSORLG00020015284RPA19956.863Oryzias_latipes_hni
ENSTNIG00000016199rpa19981.579ENSORLG00015013982rpa19981.414Oryzias_latipes_hsok
ENSTNIG00000016199rpa19958.696ENSORLG00015020383RPA19958.696Oryzias_latipes_hsok
ENSTNIG00000016199rpa16965.962ENSORLG00015005867-9665.962Oryzias_latipes_hsok
ENSTNIG00000016199rpa19978.325ENSOMEG00000004704rpa110078.069Oryzias_melastigma
ENSTNIG00000016199rpa19559.030ENSOMEG00000011040RPA19959.931Oryzias_melastigma
ENSTNIG00000016199rpa17773.262ENSOGAG00000029379-9973.262Otolemur_garnettii
ENSTNIG00000016199rpa19963.636ENSOGAG00000005581-9963.328Otolemur_garnettii
ENSTNIG00000016199rpa19964.111ENSOARG00000014479RPA19964.274Ovis_aries
ENSTNIG00000016199rpa19964.065ENSPPAG00000039680RPA19964.136Pan_paniscus
ENSTNIG00000016199rpa19964.286ENSPPRG00000011807RPA19964.286Panthera_pardus
ENSTNIG00000016199rpa19964.286ENSPTIG00000007898RPA19964.286Panthera_tigris_altaica
ENSTNIG00000016199rpa19964.228ENSPTRG00000008539RPA19964.297Pan_troglodytes
ENSTNIG00000016199rpa19963.695ENSPANG00000024592RPA19963.961Papio_anubis
ENSTNIG00000016199rpa19973.333ENSPKIG00000008053rpa19973.258Paramormyrops_kingsleyae
ENSTNIG00000016199rpa19765.615ENSPSIG00000015617RPA19965.615Pelodiscus_sinensis
ENSTNIG00000016199rpa19978.947ENSPMGG00000011589rpa19979.276Periophthalmus_magnuspinnatus
ENSTNIG00000016199rpa19957.649ENSPMGG00000000543RPA19961.905Periophthalmus_magnuspinnatus
ENSTNIG00000016199rpa19965.033ENSPEMG00000021061Rpa19965.033Peromyscus_maniculatus_bairdii
ENSTNIG00000016199rpa19964.019ENSPCIG00000019049RPA19964.019Phascolarctos_cinereus
ENSTNIG00000016199rpa19982.787ENSPFOG00000003987rpa110082.680Poecilia_formosa
ENSTNIG00000016199rpa19982.623ENSPLAG00000004984rpa110082.516Poecilia_latipinna
ENSTNIG00000016199rpa19458.929ENSPLAG00000008844-9658.929Poecilia_latipinna
ENSTNIG00000016199rpa19458.442ENSPMEG00000003627-9658.509Poecilia_mexicana
ENSTNIG00000016199rpa19982.951ENSPMEG00000020602rpa110082.843Poecilia_mexicana
ENSTNIG00000016199rpa19375.309ENSPREG00000010174rpa19575.176Poecilia_reticulata
ENSTNIG00000016199rpa19958.185ENSPREG00000010119RPA19958.333Poecilia_reticulata
ENSTNIG00000016199rpa19964.390ENSPCOG00000001799RPA19964.286Propithecus_coquereli
ENSTNIG00000016199rpa19962.885ENSPVAG00000002149RPA19962.885Pteropus_vampyrus
ENSTNIG00000016199rpa19962.107ENSPNYG00000024165RPA19962.107Pundamilia_nyererei
ENSTNIG00000016199rpa19985.550ENSPNYG00000016316rpa19985.270Pundamilia_nyererei
ENSTNIG00000016199rpa19965.785ENSPNAG00000008599rpa19964.895Pygocentrus_nattereri
ENSTNIG00000016199rpa19771.359ENSRNOG00000003123Rpa19965.359Rattus_norvegicus
ENSTNIG00000016199rpa19963.592ENSRBIG00000036587RPA19963.636Rhinopithecus_bieti
ENSTNIG00000016199rpa19958.900ENSRROG00000043278RPA19958.929Rhinopithecus_roxellana
ENSTNIG00000016199rpa19433.163YAR007CRFA19332.939Saccharomyces_cerevisiae
ENSTNIG00000016199rpa19165.133ENSSBOG00000030233RPA19765.957Saimiri_boliviensis_boliviensis
ENSTNIG00000016199rpa19963.902ENSSHAG00000007969RPA19864.821Sarcophilus_harrisii
ENSTNIG00000016199rpa19977.414ENSSFOG00015005362rpa19277.340Scleropages_formosus
ENSTNIG00000016199rpa19958.207ENSSMAG00000019746RPA19957.143Scophthalmus_maximus
ENSTNIG00000016199rpa19986.721ENSSDUG00000011949rpa110086.438Seriola_dumerili
ENSTNIG00000016199rpa19957.607ENSSDUG00000016358RPA19170.615Seriola_dumerili
ENSTNIG00000016199rpa19986.885ENSSLDG00000011806rpa110086.601Seriola_lalandi_dorsalis
ENSTNIG00000016199rpa19170.439ENSSLDG00000020784RPA19170.159Seriola_lalandi_dorsalis
ENSTNIG00000016199rpa18772.727ENSSARG00000007506RPA18972.727Sorex_araneus
ENSTNIG00000016199rpa19664.250ENSSPUG00000007223RPA19864.250Sphenodon_punctatus
ENSTNIG00000016199rpa19861.857ENSSPAG00000011165RPA19961.681Stegastes_partitus
ENSTNIG00000016199rpa19984.641ENSSPAG00000009903rpa110084.477Stegastes_partitus
ENSTNIG00000016199rpa19963.218ENSSSCG00000017822RPA19963.907Sus_scrofa
ENSTNIG00000016199rpa19962.745ENSTGUG00000005775RPA19962.745Taeniopygia_guttata
ENSTNIG00000016199rpa19469.231ENSTRUG00000000405RPA19963.618Takifugu_rubripes
ENSTNIG00000016199rpa19988.562ENSTRUG00000003616rpa110088.399Takifugu_rubripes
ENSTNIG00000016199rpa17270.227ENSTBEG00000002709RPA17470.227Tupaia_belangeri
ENSTNIG00000016199rpa19963.192ENSTTRG00000001169RPA19963.355Tursiops_truncatus
ENSTNIG00000016199rpa18873.077ENSUAMG00000015676RPA19773.077Ursus_americanus
ENSTNIG00000016199rpa19963.636ENSUMAG00000009328RPA19963.857Ursus_maritimus
ENSTNIG00000016199rpa19962.459ENSVPAG00000009443RPA19962.459Vicugna_pacos
ENSTNIG00000016199rpa19965.147ENSVVUG00000021715RPA19965.147Vulpes_vulpes
ENSTNIG00000016199rpa19969.836ENSXETG00000013538rpa19969.005Xenopus_tropicalis
ENSTNIG00000016199rpa19560.997ENSXCOG00000009899-9960.788Xiphophorus_couchianus
ENSTNIG00000016199rpa19381.338ENSXCOG00000010068rpa19480.877Xiphophorus_couchianus
ENSTNIG00000016199rpa19269.841ENSXMAG00000010333RPA19069.615Xiphophorus_maculatus
ENSTNIG00000016199rpa19981.639ENSXMAG00000004102rpa110082.456Xiphophorus_maculatus

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