EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000016223 (Gene tree)
Gene ID: -
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1a
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 1624 bases
Position: chr16:3849210-3850833
Accession: ZDB-GENE-040426-1950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000019316	RRM_1	PF00076.22	3.5e-32	1	2
ENSTNIP00000019316	RRM_1	PF00076.22	3.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000019545	-	744	-	ENSTNIP00000019316	247 (aa)	-	H3DFM2

Gene Model

Click here to download ENSTNIG00000016223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000016223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000016223	srsf1a	75	67.027	ENSTNIG00000000697	srsf9	74	65.405
ENSTNIG00000016223	srsf1a	78	81.865	ENSTNIG00000009993	-	80	82.902
ENSTNIG00000016223	srsf1a	64	43.575	ENSTNIG00000016411	srsf5b	60	44.444
ENSTNIG00000016223	srsf1a	65	42.286	ENSTNIG00000001692	srsf6a	52	41.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000016223	srsf1a	98	84.362	ENSG00000136450	SRSF1	95	91.935	Homo_sapiens
ENSTNIG00000016223	srsf1a	77	87.958	ENSAPOG00000008542	-	80	87.437	Acanthochromis_polyacanthus
ENSTNIG00000016223	srsf1a	99	98.776	ENSAPOG00000002748	-	100	98.776	Acanthochromis_polyacanthus
ENSTNIG00000016223	srsf1a	77	87.958	ENSAMEG00000002635	SRSF1	77	88.482	Ailuropoda_melanoleuca
ENSTNIG00000016223	srsf1a	99	92.653	ENSACIG00000008091	srsf1a	100	92.653	Amphilophus_citrinellus
ENSTNIG00000016223	srsf1a	99	99.184	ENSAOCG00000010671	-	100	99.184	Amphiprion_ocellaris
ENSTNIG00000016223	srsf1a	77	87.437	ENSAOCG00000000337	-	80	87.437	Amphiprion_ocellaris
ENSTNIG00000016223	srsf1a	99	99.184	ENSAPEG00000009915	-	100	99.184	Amphiprion_percula
ENSTNIG00000016223	srsf1a	77	87.437	ENSAPEG00000023352	-	79	87.437	Amphiprion_percula
ENSTNIG00000016223	srsf1a	80	85.859	ENSATEG00000021567	-	80	88.021	Anabas_testudineus
ENSTNIG00000016223	srsf1a	99	98.381	ENSATEG00000022403	-	100	98.381	Anabas_testudineus
ENSTNIG00000016223	srsf1a	77	88.601	ENSACAG00000005542	-	78	90.674	Anolis_carolinensis
ENSTNIG00000016223	srsf1a	79	66.495	ENSANAG00000025417	-	73	67.016	Aotus_nancymaae
ENSTNIG00000016223	srsf1a	98	84.362	ENSANAG00000020583	-	93	91.176	Aotus_nancymaae
ENSTNIG00000016223	srsf1a	53	72.903	ENSAMXG00000024373	-	72	76.774	Astyanax_mexicanus
ENSTNIG00000016223	srsf1a	94	80.335	ENSAMXG00000035996	srsf1a	79	88.384	Astyanax_mexicanus
ENSTNIG00000016223	srsf1a	98	84.362	ENSBTAG00000014766	SRSF1	78	91.192	Bos_taurus
ENSTNIG00000016223	srsf1a	98	84.362	ENSCJAG00000041713	-	93	91.176	Callithrix_jacchus
ENSTNIG00000016223	srsf1a	77	81.865	ENSCJAG00000008111	-	86	82.902	Callithrix_jacchus
ENSTNIG00000016223	srsf1a	98	84.362	ENSCAFG00000017430	SRSF1	76	91.192	Canis_familiaris
ENSTNIG00000016223	srsf1a	98	84.362	ENSCAFG00020025632	-	76	91.192	Canis_lupus_dingo
ENSTNIG00000016223	srsf1a	77	89.119	ENSCHIG00000010787	SRSF1	78	91.192	Capra_hircus
ENSTNIG00000016223	srsf1a	98	84.362	ENSTSYG00000013899	-	93	91.176	Carlito_syrichta
ENSTNIG00000016223	srsf1a	98	84.362	ENSCPOG00000032681	-	78	91.192	Cavia_porcellus
ENSTNIG00000016223	srsf1a	98	84.362	ENSCCAG00000029484	-	93	91.176	Cebus_capucinus
ENSTNIG00000016223	srsf1a	98	84.362	ENSCATG00000042294	-	93	91.176	Cercocebus_atys
ENSTNIG00000016223	srsf1a	98	84.362	ENSCLAG00000014707	-	78	91.192	Chinchilla_lanigera
ENSTNIG00000016223	srsf1a	98	83.539	ENSCSAG00000005642	-	76	90.155	Chlorocebus_sabaeus
ENSTNIG00000016223	srsf1a	77	89.119	ENSCHOG00000001899	SRSF1	78	91.192	Choloepus_hoffmanni
ENSTNIG00000016223	srsf1a	98	84.362	ENSCPBG00000009851	-	78	91.192	Chrysemys_picta_bellii
ENSTNIG00000016223	srsf1a	98	84.362	ENSCANG00000029726	-	93	91.176	Colobus_angolensis_palliatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSCGRG00001000670	Srsf1	76	91.192	Cricetulus_griseus_chok1gshd
ENSTNIG00000016223	srsf1a	98	84.362	ENSCGRG00000005590	Srsf1	78	91.192	Cricetulus_griseus_crigri
ENSTNIG00000016223	srsf1a	77	81.731	ENSCSEG00000009973	-	79	81.731	Cynoglossus_semilaevis
ENSTNIG00000016223	srsf1a	99	90.244	ENSCSEG00000014272	-	100	90.244	Cynoglossus_semilaevis
ENSTNIG00000016223	srsf1a	77	86.082	ENSCVAG00000005458	-	90	86.264	Cyprinodon_variegatus
ENSTNIG00000016223	srsf1a	99	98.776	ENSCVAG00000018617	-	100	98.776	Cyprinodon_variegatus
ENSTNIG00000016223	srsf1a	77	89.637	ENSDARG00000017843	srsf1b	79	91.710	Danio_rerio
ENSTNIG00000016223	srsf1a	77	84.236	ENSDARG00000057691	srsf1a	99	85.864	Danio_rerio
ENSTNIG00000016223	srsf1a	98	84.362	ENSDNOG00000011737	-	76	91.192	Dasypus_novemcinctus
ENSTNIG00000016223	srsf1a	98	84.362	ENSDORG00000015082	Srsf1	78	91.192	Dipodomys_ordii
ENSTNIG00000016223	srsf1a	72	89.444	ENSETEG00000005349	-	62	90.556	Echinops_telfairi
ENSTNIG00000016223	srsf1a	98	84.362	ENSEASG00005002922	-	76	91.192	Equus_asinus_asinus
ENSTNIG00000016223	srsf1a	77	89.119	ENSECAG00000016654	SRSF1	78	91.192	Equus_caballus
ENSTNIG00000016223	srsf1a	72	90.556	ENSEEUG00000009255	-	62	91.667	Erinaceus_europaeus
ENSTNIG00000016223	srsf1a	77	92.708	ENSELUG00000021646	srsf1a	76	93.229	Esox_lucius
ENSTNIG00000016223	srsf1a	98	84.362	ENSFCAG00000002250	-	90	91.160	Felis_catus
ENSTNIG00000016223	srsf1a	77	94.340	ENSFALG00000005062	-	76	72.539	Ficedula_albicollis
ENSTNIG00000016223	srsf1a	98	84.362	ENSFDAG00000010646	-	78	91.192	Fukomys_damarensis
ENSTNIG00000016223	srsf1a	99	98.367	ENSFHEG00000003174	srsf1a	100	98.367	Fundulus_heteroclitus
ENSTNIG00000016223	srsf1a	79	88.776	ENSGMOG00000014787	-	80	87.958	Gadus_morhua
ENSTNIG00000016223	srsf1a	77	89.119	ENSGALG00000005525	SRSF1	78	91.192	Gallus_gallus
ENSTNIG00000016223	srsf1a	77	86.911	ENSGACG00000020621	srsf1b	78	86.387	Gasterosteus_aculeatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSGAGG00000022965	-	76	91.192	Gopherus_agassizii
ENSTNIG00000016223	srsf1a	98	84.362	ENSGGOG00000004386	SRSF1	93	91.176	Gorilla_gorilla
ENSTNIG00000016223	srsf1a	99	98.776	ENSHBUG00000016788	srsf1a	100	98.776	Haplochromis_burtoni
ENSTNIG00000016223	srsf1a	66	88.415	ENSHGLG00000000669	-	76	90.854	Heterocephalus_glaber_female
ENSTNIG00000016223	srsf1a	66	88.415	ENSHGLG00000000600	-	76	90.854	Heterocephalus_glaber_female
ENSTNIG00000016223	srsf1a	98	84.362	ENSHGLG00100016906	-	78	91.192	Heterocephalus_glaber_male
ENSTNIG00000016223	srsf1a	79	89.000	ENSHCOG00000018918	srsf1a	78	90.955	Hippocampus_comes
ENSTNIG00000016223	srsf1a	78	86.070	ENSIPUG00000017039	srsf1a	80	88.060	Ictalurus_punctatus
ENSTNIG00000016223	srsf1a	77	89.062	ENSIPUG00000008750	srsf1b	80	90.256	Ictalurus_punctatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSSTOG00000000243	-	96	87.047	Ictidomys_tridecemlineatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSJJAG00000000102	-	78	91.192	Jaculus_jaculus
ENSTNIG00000016223	srsf1a	99	97.561	ENSKMAG00000019232	srsf1a	100	97.561	Kryptolebias_marmoratus
ENSTNIG00000016223	srsf1a	77	79.592	ENSLBEG00000015294	-	79	81.122	Labrus_bergylta
ENSTNIG00000016223	srsf1a	99	98.776	ENSLBEG00000020864	-	100	98.776	Labrus_bergylta
ENSTNIG00000016223	srsf1a	77	89.583	ENSLACG00000014160	srsf1a	72	89.583	Latimeria_chalumnae
ENSTNIG00000016223	srsf1a	77	88.542	ENSLOCG00000005994	srsf1a	78	91.667	Lepisosteus_oculatus
ENSTNIG00000016223	srsf1a	77	89.119	ENSLAFG00000025743	SRSF1	78	91.192	Loxodonta_africana
ENSTNIG00000016223	srsf1a	98	84.362	ENSMFAG00000040003	-	93	91.176	Macaca_fascicularis
ENSTNIG00000016223	srsf1a	98	84.362	ENSMMUG00000004725	SRSF1	93	91.176	Macaca_mulatta
ENSTNIG00000016223	srsf1a	98	81.148	ENSMMUG00000003260	-	93	87.500	Macaca_mulatta
ENSTNIG00000016223	srsf1a	98	81.557	ENSMNEG00000015983	-	76	88.601	Macaca_nemestrina
ENSTNIG00000016223	srsf1a	98	84.362	ENSMNEG00000027680	-	93	91.176	Macaca_nemestrina
ENSTNIG00000016223	srsf1a	98	82.158	ENSMLEG00000015243	-	76	86.911	Mandrillus_leucophaeus
ENSTNIG00000016223	srsf1a	77	89.119	ENSMLEG00000040509	SRSF1	78	91.192	Mandrillus_leucophaeus
ENSTNIG00000016223	srsf1a	77	91.146	ENSMAMG00000019691	-	80	90.625	Mastacembelus_armatus
ENSTNIG00000016223	srsf1a	99	99.184	ENSMAMG00000018454	-	100	99.184	Mastacembelus_armatus
ENSTNIG00000016223	srsf1a	77	89.005	ENSMAMG00000019687	-	78	89.005	Mastacembelus_armatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSMAUG00000021845	Srsf1	78	91.192	Mesocricetus_auratus
ENSTNIG00000016223	srsf1a	98	84.362	ENSMICG00000013639	-	93	91.176	Microcebus_murinus
ENSTNIG00000016223	srsf1a	98	84.362	ENSMOCG00000001996	Srsf1	78	91.192	Microtus_ochrogaster
ENSTNIG00000016223	srsf1a	99	92.245	ENSMMOG00000014354	srsf1a	100	92.245	Mola_mola
ENSTNIG00000016223	srsf1a	72	90.055	ENSMODG00000014781	-	62	90.608	Monodelphis_domestica
ENSTNIG00000016223	srsf1a	78	98.446	ENSMALG00000017129	-	76	98.446	Monopterus_albus
ENSTNIG00000016223	srsf1a	80	77.778	ENSMALG00000007763	-	77	81.675	Monopterus_albus
ENSTNIG00000016223	srsf1a	98	84.362	MGP_CAROLIEiJ_G0016943	Srsf1	90	91.160	Mus_caroli
ENSTNIG00000016223	srsf1a	98	84.362	ENSMUSG00000018379	Srsf1	90	91.160	Mus_musculus
ENSTNIG00000016223	srsf1a	98	84.362	MGP_PahariEiJ_G0018074	Srsf1	74	96.154	Mus_pahari
ENSTNIG00000016223	srsf1a	98	84.362	MGP_SPRETEiJ_G0017790	Srsf1	90	91.160	Mus_spretus
ENSTNIG00000016223	srsf1a	77	89.119	ENSMPUG00000015369	SRSF1	78	91.192	Mustela_putorius_furo
ENSTNIG00000016223	srsf1a	80	86.802	ENSMLUG00000023995	-	77	86.387	Myotis_lucifugus
ENSTNIG00000016223	srsf1a	77	89.119	ENSMLUG00000011040	SRSF1	78	91.192	Myotis_lucifugus
ENSTNIG00000016223	srsf1a	77	89.119	ENSNGAG00000011395	Srsf1	78	91.192	Nannospalax_galili
ENSTNIG00000016223	srsf1a	98	74.180	ENSNBRG00000008041	srsf1b	78	80.729	Neolamprologus_brichardi
ENSTNIG00000016223	srsf1a	98	84.362	ENSNLEG00000008088	-	93	91.176	Nomascus_leucogenys
ENSTNIG00000016223	srsf1a	53	87.121	ENSOPRG00000001234	-	72	90.152	Ochotona_princeps
ENSTNIG00000016223	srsf1a	98	84.362	ENSODEG00000011481	-	78	91.192	Octodon_degus
ENSTNIG00000016223	srsf1a	100	98.785	ENSONIG00000013160	-	100	98.785	Oreochromis_niloticus
ENSTNIG00000016223	srsf1a	79	90.769	ENSONIG00000004860	-	79	90.104	Oreochromis_niloticus
ENSTNIG00000016223	srsf1a	98	63.821	ENSOCUG00000010894	-	75	72.487	Oryctolagus_cuniculus
ENSTNIG00000016223	srsf1a	99	99.184	ENSORLG00000004580	srsf1a	100	99.184	Oryzias_latipes
ENSTNIG00000016223	srsf1a	99	99.184	ENSORLG00020009456	srsf1a	100	99.184	Oryzias_latipes_hni
ENSTNIG00000016223	srsf1a	99	98.776	ENSORLG00015014384	srsf1a	100	98.776	Oryzias_latipes_hsok
ENSTNIG00000016223	srsf1a	91	97.345	ENSOMEG00000004106	srsf1a	93	97.345	Oryzias_melastigma
ENSTNIG00000016223	srsf1a	82	89.706	ENSOGAG00000025950	-	78	91.192	Otolemur_garnettii
ENSTNIG00000016223	srsf1a	77	87.958	ENSOARG00000008323	SRSF1	77	87.958	Ovis_aries
ENSTNIG00000016223	srsf1a	98	84.362	ENSPPAG00000043403	-	93	91.176	Pan_paniscus
ENSTNIG00000016223	srsf1a	98	84.362	ENSPPRG00000004238	-	90	91.160	Panthera_pardus
ENSTNIG00000016223	srsf1a	98	84.362	ENSPTRG00000049077	SRSF1	93	91.176	Pan_troglodytes
ENSTNIG00000016223	srsf1a	98	66.939	ENSPANG00000030275	-	75	67.010	Papio_anubis
ENSTNIG00000016223	srsf1a	98	84.362	ENSPANG00000022305	-	93	91.176	Papio_anubis
ENSTNIG00000016223	srsf1a	78	90.625	ENSPKIG00000007204	srsf1a	83	90.625	Paramormyrops_kingsleyae
ENSTNIG00000016223	srsf1a	79	87.817	ENSPKIG00000012857	srsf1b	78	91.667	Paramormyrops_kingsleyae
ENSTNIG00000016223	srsf1a	77	81.865	ENSPSIG00000009000	-	72	90.226	Pelodiscus_sinensis
ENSTNIG00000016223	srsf1a	96	82.278	ENSPMGG00000005467	-	79	87.113	Periophthalmus_magnuspinnatus
ENSTNIG00000016223	srsf1a	99	96.429	ENSPMGG00000013112	-	100	96.429	Periophthalmus_magnuspinnatus
ENSTNIG00000016223	srsf1a	98	84.362	ENSPEMG00000021416	Srsf1	78	91.192	Peromyscus_maniculatus_bairdii
ENSTNIG00000016223	srsf1a	77	89.175	ENSPCIG00000006076	-	78	91.237	Phascolarctos_cinereus
ENSTNIG00000016223	srsf1a	79	86.294	ENSPFOG00000018325	-	69	86.528	Poecilia_formosa
ENSTNIG00000016223	srsf1a	79	86.294	ENSPLAG00000008416	srsf1b	78	86.528	Poecilia_latipinna
ENSTNIG00000016223	srsf1a	50	98.374	ENSPMEG00000014312	-	99	98.374	Poecilia_mexicana
ENSTNIG00000016223	srsf1a	79	86.294	ENSPMEG00000002388	-	78	86.528	Poecilia_mexicana
ENSTNIG00000016223	srsf1a	50	98.374	ENSPMEG00000020607	-	99	98.374	Poecilia_mexicana
ENSTNIG00000016223	srsf1a	99	98.776	ENSPREG00000009667	srsf1a	100	98.776	Poecilia_reticulata
ENSTNIG00000016223	srsf1a	98	84.362	ENSPPYG00000008240	SRSF1	78	91.192	Pongo_abelii
ENSTNIG00000016223	srsf1a	77	89.119	ENSPCAG00000005199	SRSF1	78	91.192	Procavia_capensis
ENSTNIG00000016223	srsf1a	78	71.717	ENSPCOG00000025736	-	93	72.251	Propithecus_coquereli
ENSTNIG00000016223	srsf1a	98	84.362	ENSPCOG00000023654	-	93	91.176	Propithecus_coquereli
ENSTNIG00000016223	srsf1a	53	95.714	ENSPVAG00000000519	-	53	95.714	Pteropus_vampyrus
ENSTNIG00000016223	srsf1a	77	91.099	ENSPNAG00000014601	srsf1b	78	91.099	Pygocentrus_nattereri
ENSTNIG00000016223	srsf1a	94	83.621	ENSPNAG00000022241	srsf1a	78	90.576	Pygocentrus_nattereri
ENSTNIG00000016223	srsf1a	77	89.119	ENSRNOG00000050323	Srsf1	78	91.192	Rattus_norvegicus
ENSTNIG00000016223	srsf1a	98	84.362	ENSRBIG00000034445	-	93	91.176	Rhinopithecus_bieti
ENSTNIG00000016223	srsf1a	98	84.362	ENSRROG00000041506	-	93	91.176	Rhinopithecus_roxellana
ENSTNIG00000016223	srsf1a	98	84.362	ENSSBOG00000025377	-	93	91.176	Saimiri_boliviensis_boliviensis
ENSTNIG00000016223	srsf1a	77	89.175	ENSSHAG00000002552	-	78	91.237	Sarcophilus_harrisii
ENSTNIG00000016223	srsf1a	77	91.623	ENSSFOG00015004800	srsf1a	79	89.744	Scleropages_formosus
ENSTNIG00000016223	srsf1a	77	84.000	ENSSMAG00000009719	-	78	84.000	Scophthalmus_maximus
ENSTNIG00000016223	srsf1a	99	97.551	ENSSMAG00000007018	-	100	97.551	Scophthalmus_maximus
ENSTNIG00000016223	srsf1a	99	71.200	ENSSDUG00000003929	-	83	78.894	Seriola_dumerili
ENSTNIG00000016223	srsf1a	99	98.776	ENSSDUG00000011303	-	100	98.776	Seriola_dumerili
ENSTNIG00000016223	srsf1a	99	98.776	ENSSLDG00000010543	-	100	98.776	Seriola_lalandi_dorsalis
ENSTNIG00000016223	srsf1a	77	78.646	ENSSLDG00000016868	-	76	78.125	Seriola_lalandi_dorsalis
ENSTNIG00000016223	srsf1a	74	80.541	ENSSLDG00000016895	-	78	83.243	Seriola_lalandi_dorsalis
ENSTNIG00000016223	srsf1a	72	90.556	ENSSARG00000010949	-	62	91.667	Sorex_araneus
ENSTNIG00000016223	srsf1a	98	84.362	ENSSPUG00000000804	-	91	91.160	Sphenodon_punctatus
ENSTNIG00000016223	srsf1a	78	83.981	ENSSPAG00000014152	-	80	83.981	Stegastes_partitus
ENSTNIG00000016223	srsf1a	99	98.780	ENSSPAG00000022562	-	100	98.780	Stegastes_partitus
ENSTNIG00000016223	srsf1a	98	84.362	ENSSSCG00000017626	-	78	91.192	Sus_scrofa
ENSTNIG00000016223	srsf1a	53	87.218	ENSTGUG00000008416	-	72	90.226	Taeniopygia_guttata
ENSTNIG00000016223	srsf1a	99	100.000	ENSTRUG00000003691	srsf1a	100	100.000	Takifugu_rubripes
ENSTNIG00000016223	srsf1a	72	87.778	ENSTBEG00000015378	-	62	90.556	Tupaia_belangeri
ENSTNIG00000016223	srsf1a	53	87.121	ENSTTRG00000007310	SRSF1	72	90.152	Tursiops_truncatus
ENSTNIG00000016223	srsf1a	77	89.119	ENSUAMG00000009858	SRSF1	78	91.192	Ursus_americanus
ENSTNIG00000016223	srsf1a	98	84.362	ENSUMAG00000000455	-	76	91.192	Ursus_maritimus
ENSTNIG00000016223	srsf1a	77	88.601	ENSVPAG00000010094	SRSF1	78	90.674	Vicugna_pacos
ENSTNIG00000016223	srsf1a	98	84.362	ENSVVUG00000011882	-	76	91.192	Vulpes_vulpes
ENSTNIG00000016223	srsf1a	77	91.099	ENSXETG00000008954	srsf1	79	83.491	Xenopus_tropicalis
ENSTNIG00000016223	srsf1a	99	98.776	ENSXMAG00000011766	srsf1a	100	98.776	Xiphophorus_maculatus