EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000016277 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 11191 bases
Position: chr16:5035859-5047049
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000019371	Npa1	PF11707.8	1.7e-80	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000019600	-	6675	-	ENSTNIP00000019371	2224 (aa)	-	H3DFS7
ENSTNIT00000001404	-	2481	-	ENSTNIP00000000830	826 (aa)	-	H3BXW7
ENSTNIT00000002195	-	3324	-	ENSTNIP00000003690	1108 (aa)	-	H3C620

Gene Model

Click here to download ENSTNIG00000016277's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000016277's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000016277	urb1	99	43.359	ENSG00000142207	URB1	99	43.254	Homo_sapiens
ENSTNIG00000016277	urb1	96	70.064	ENSAPOG00000020308	urb1	98	70.064	Acanthochromis_polyacanthus
ENSTNIG00000016277	urb1	99	43.140	ENSAMEG00000011998	URB1	99	43.453	Ailuropoda_melanoleuca
ENSTNIG00000016277	urb1	96	63.151	ENSACIG00000003248	urb1	96	63.151	Amphilophus_citrinellus
ENSTNIG00000016277	urb1	99	60.222	ENSAOCG00000010364	urb1	99	60.222	Amphiprion_ocellaris
ENSTNIG00000016277	urb1	97	72.944	ENSAPEG00000010758	urb1	98	72.944	Amphiprion_percula
ENSTNIG00000016277	urb1	99	67.498	ENSATEG00000011790	urb1	99	67.498	Anabas_testudineus
ENSTNIG00000016277	urb1	98	44.959	ENSAPLG00000012791	URB1	99	44.989	Anas_platyrhynchos
ENSTNIG00000016277	urb1	99	43.428	ENSACAG00000002817	URB1	97	43.453	Anolis_carolinensis
ENSTNIG00000016277	urb1	100	43.064	ENSANAG00000024617	URB1	99	43.114	Aotus_nancymaae
ENSTNIG00000016277	urb1	99	67.158	ENSACLG00000024865	urb1	99	67.351	Astatotilapia_calliptera
ENSTNIG00000016277	urb1	99	47.797	ENSAMXG00000012306	urb1	99	47.845	Astyanax_mexicanus
ENSTNIG00000016277	urb1	99	42.091	ENSBTAG00000012412	URB1	99	42.230	Bos_taurus
ENSTNIG00000016277	urb1	99	43.159	ENSCJAG00000009118	URB1	99	43.253	Callithrix_jacchus
ENSTNIG00000016277	urb1	99	43.113	ENSCAFG00000008892	URB1	99	43.201	Canis_familiaris
ENSTNIG00000016277	urb1	99	42.920	ENSCAFG00020025987	-	99	43.007	Canis_lupus_dingo
ENSTNIG00000016277	urb1	99	42.368	ENSCAFG00020025994	-	99	42.456	Canis_lupus_dingo
ENSTNIG00000016277	urb1	99	42.249	ENSCHIG00000015645	URB1	99	42.387	Capra_hircus
ENSTNIG00000016277	urb1	100	42.882	ENSTSYG00000013286	URB1	99	42.882	Carlito_syrichta
ENSTNIG00000016277	urb1	99	42.369	ENSCAPG00000015589	URB1	99	42.369	Cavia_aperea
ENSTNIG00000016277	urb1	99	42.876	ENSCPOG00000006748	URB1	99	42.876	Cavia_porcellus
ENSTNIG00000016277	urb1	99	42.876	ENSCCAG00000021299	URB1	99	42.995	Cebus_capucinus
ENSTNIG00000016277	urb1	100	43.253	ENSCATG00000042630	URB1	99	43.235	Cercocebus_atys
ENSTNIG00000016277	urb1	100	43.761	ENSCLAG00000005262	URB1	99	43.761	Chinchilla_lanigera
ENSTNIG00000016277	urb1	100	42.651	ENSCSAG00000009584	URB1	99	42.751	Chlorocebus_sabaeus
ENSTNIG00000016277	urb1	99	45.674	ENSCPBG00000006454	URB1	99	45.674	Chrysemys_picta_bellii
ENSTNIG00000016277	urb1	99	43.198	ENSCANG00000031088	URB1	99	43.317	Colobus_angolensis_palliatus
ENSTNIG00000016277	urb1	99	42.738	ENSCGRG00001010616	Urb1	99	42.826	Cricetulus_griseus_chok1gshd
ENSTNIG00000016277	urb1	99	42.756	ENSCGRG00000015840	Urb1	99	42.895	Cricetulus_griseus_crigri
ENSTNIG00000016277	urb1	99	60.843	ENSCSEG00000012616	urb1	99	60.843	Cynoglossus_semilaevis
ENSTNIG00000016277	urb1	93	66.847	ENSCVAG00000009076	urb1	97	69.729	Cyprinodon_variegatus
ENSTNIG00000016277	urb1	99	51.157	ENSDARG00000060308	urb1	99	51.133	Danio_rerio
ENSTNIG00000016277	urb1	85	46.434	ENSDNOG00000015586	URB1	98	46.434	Dasypus_novemcinctus
ENSTNIG00000016277	urb1	99	42.713	ENSDORG00000006735	Urb1	99	42.870	Dipodomys_ordii
ENSTNIG00000016277	urb1	85	52.490	ENSETEG00000009080	URB1	84	52.490	Echinops_telfairi
ENSTNIG00000016277	urb1	99	42.406	ENSEASG00005007711	URB1	99	42.450	Equus_asinus_asinus
ENSTNIG00000016277	urb1	93	53.988	ENSECAG00000013206	URB1	98	53.988	Equus_caballus
ENSTNIG00000016277	urb1	99	52.902	ENSELUG00000020516	urb1	98	53.103	Esox_lucius
ENSTNIG00000016277	urb1	99	42.096	ENSFCAG00000002177	URB1	99	42.147	Felis_catus
ENSTNIG00000016277	urb1	98	42.408	ENSFALG00000004636	URB1	98	42.504	Ficedula_albicollis
ENSTNIG00000016277	urb1	99	42.914	ENSFDAG00000007288	URB1	94	42.895	Fukomys_damarensis
ENSTNIG00000016277	urb1	99	57.829	ENSFHEG00000000202	urb1	99	61.094	Fundulus_heteroclitus
ENSTNIG00000016277	urb1	94	56.119	ENSGMOG00000001838	urb1	94	56.119	Gadus_morhua
ENSTNIG00000016277	urb1	99	45.783	ENSGALG00000015887	URB1	97	45.783	Gallus_gallus
ENSTNIG00000016277	urb1	95	68.478	ENSGAFG00000020694	urb1	98	68.261	Gambusia_affinis
ENSTNIG00000016277	urb1	99	67.289	ENSGACG00000011703	urb1	99	67.289	Gasterosteus_aculeatus
ENSTNIG00000016277	urb1	99	45.307	ENSGAGG00000022544	URB1	99	45.307	Gopherus_agassizii
ENSTNIG00000016277	urb1	100	43.455	ENSGGOG00000000285	URB1	99	43.505	Gorilla_gorilla
ENSTNIG00000016277	urb1	99	67.113	ENSHBUG00000001904	urb1	99	67.306	Haplochromis_burtoni
ENSTNIG00000016277	urb1	100	42.055	ENSHGLG00000004907	URB1	99	42.199	Heterocephalus_glaber_female
ENSTNIG00000016277	urb1	100	42.435	ENSHGLG00100010749	URB1	99	42.580	Heterocephalus_glaber_male
ENSTNIG00000016277	urb1	75	61.429	ENSHCOG00000018683	urb1	97	62.573	Hippocampus_comes
ENSTNIG00000016277	urb1	99	47.413	ENSIPUG00000014721	urb1	99	47.768	Ictalurus_punctatus
ENSTNIG00000016277	urb1	99	43.229	ENSSTOG00000004539	URB1	99	43.197	Ictidomys_tridecemlineatus
ENSTNIG00000016277	urb1	93	67.133	ENSKMAG00000006001	urb1	96	67.073	Kryptolebias_marmoratus
ENSTNIG00000016277	urb1	97	63.385	ENSLBEG00000027208	urb1	98	63.339	Labrus_bergylta
ENSTNIG00000016277	urb1	99	43.539	ENSLACG00000017059	URB1	99	43.582	Latimeria_chalumnae
ENSTNIG00000016277	urb1	99	50.198	ENSLOCG00000009190	urb1	99	50.198	Lepisosteus_oculatus
ENSTNIG00000016277	urb1	99	43.002	ENSLAFG00000010407	URB1	99	43.002	Loxodonta_africana
ENSTNIG00000016277	urb1	100	42.989	ENSMFAG00000034391	URB1	96	43.040	Macaca_fascicularis
ENSTNIG00000016277	urb1	100	42.857	ENSMMUG00000010295	URB1	99	42.907	Macaca_mulatta
ENSTNIG00000016277	urb1	100	42.499	ENSMNEG00000032981	URB1	99	42.386	Macaca_nemestrina
ENSTNIG00000016277	urb1	100	43.210	ENSMLEG00000041435	URB1	99	43.172	Mandrillus_leucophaeus
ENSTNIG00000016277	urb1	99	64.973	ENSMAMG00000011238	urb1	99	64.973	Mastacembelus_armatus
ENSTNIG00000016277	urb1	99	60.700	ENSMZEG00005011862	urb1	99	60.895	Maylandia_zebra
ENSTNIG00000016277	urb1	98	44.890	ENSMGAG00000014512	URB1	98	45.205	Meleagris_gallopavo
ENSTNIG00000016277	urb1	92	51.574	ENSMAUG00000010516	Urb1	99	51.574	Mesocricetus_auratus
ENSTNIG00000016277	urb1	99	42.712	ENSMICG00000016424	URB1	99	42.712	Microcebus_murinus
ENSTNIG00000016277	urb1	99	42.292	ENSMOCG00000012613	Urb1	99	42.380	Microtus_ochrogaster
ENSTNIG00000016277	urb1	99	42.218	ENSMODG00000021076	URB1	99	42.218	Monodelphis_domestica
ENSTNIG00000016277	urb1	99	63.043	ENSMALG00000017411	urb1	99	63.043	Monopterus_albus
ENSTNIG00000016277	urb1	99	42.537	MGP_CAROLIEiJ_G0020948	Urb1	99	42.537	Mus_caroli
ENSTNIG00000016277	urb1	99	42.375	ENSMUSG00000039929	Urb1	99	42.507	Mus_musculus
ENSTNIG00000016277	urb1	99	42.576	MGP_PahariEiJ_G0016653	Urb1	99	42.576	Mus_pahari
ENSTNIG00000016277	urb1	99	42.495	MGP_SPRETEiJ_G0021854	Urb1	99	42.582	Mus_spretus
ENSTNIG00000016277	urb1	99	42.927	ENSMPUG00000001123	URB1	99	43.059	Mustela_putorius_furo
ENSTNIG00000016277	urb1	99	42.267	ENSNGAG00000001905	Urb1	99	42.267	Nannospalax_galili
ENSTNIG00000016277	urb1	83	66.667	ENSNBRG00000001049	urb1	98	66.596	Neolamprologus_brichardi
ENSTNIG00000016277	urb1	99	41.630	ENSNLEG00000026872	URB1	99	41.538	Nomascus_leucogenys
ENSTNIG00000016277	urb1	90	55.429	ENSMEUG00000010828	URB1	94	40.856	Notamacropus_eugenii
ENSTNIG00000016277	urb1	99	41.060	ENSOPRG00000013482	URB1	99	41.067	Ochotona_princeps
ENSTNIG00000016277	urb1	100	42.403	ENSODEG00000002587	URB1	99	42.510	Octodon_degus
ENSTNIG00000016277	urb1	99	67.484	ENSONIG00000005599	urb1	99	67.484	Oreochromis_niloticus
ENSTNIG00000016277	urb1	99	42.718	ENSOCUG00000009381	URB1	99	42.857	Oryctolagus_cuniculus
ENSTNIG00000016277	urb1	99	60.535	ENSORLG00000003429	urb1	99	60.535	Oryzias_latipes
ENSTNIG00000016277	urb1	99	60.382	ENSORLG00020013785	urb1	99	60.382	Oryzias_latipes_hni
ENSTNIG00000016277	urb1	94	66.852	ENSORLG00015019421	urb1	99	66.852	Oryzias_latipes_hsok
ENSTNIG00000016277	urb1	79	65.253	ENSOMEG00000002094	urb1	98	65.253	Oryzias_melastigma
ENSTNIG00000016277	urb1	100	42.360	ENSOGAG00000017140	URB1	99	42.384	Otolemur_garnettii
ENSTNIG00000016277	urb1	97	46.386	ENSOARG00000013679	URB1	99	46.062	Ovis_aries
ENSTNIG00000016277	urb1	100	43.015	ENSPPAG00000003423	URB1	99	43.065	Pan_paniscus
ENSTNIG00000016277	urb1	99	42.147	ENSPPRG00000023131	URB1	99	42.235	Panthera_pardus
ENSTNIG00000016277	urb1	89	43.800	ENSPTIG00000016125	URB1	94	43.899	Panthera_tigris_altaica
ENSTNIG00000016277	urb1	100	43.015	ENSPTRG00000013852	URB1	99	43.065	Pan_troglodytes
ENSTNIG00000016277	urb1	100	43.122	ENSPANG00000021964	URB1	99	43.153	Papio_anubis
ENSTNIG00000016277	urb1	99	51.222	ENSPKIG00000003683	urb1	98	51.355	Paramormyrops_kingsleyae
ENSTNIG00000016277	urb1	99	42.813	ENSPEMG00000021205	Urb1	98	42.901	Peromyscus_maniculatus_bairdii
ENSTNIG00000016277	urb1	78	31.356	ENSPMAG00000009733	URB1	99	32.090	Petromyzon_marinus
ENSTNIG00000016277	urb1	99	41.777	ENSPCIG00000016350	URB1	99	42.170	Phascolarctos_cinereus
ENSTNIG00000016277	urb1	97	62.335	ENSPLAG00000004371	urb1	99	62.335	Poecilia_latipinna
ENSTNIG00000016277	urb1	99	62.951	ENSPMEG00000006634	urb1	99	62.951	Poecilia_mexicana
ENSTNIG00000016277	urb1	99	62.673	ENSPREG00000013453	urb1	99	62.673	Poecilia_reticulata
ENSTNIG00000016277	urb1	99	42.965	ENSPPYG00000011359	URB1	99	42.813	Pongo_abelii
ENSTNIG00000016277	urb1	99	38.472	ENSPCAG00000007430	URB1	99	38.482	Procavia_capensis
ENSTNIG00000016277	urb1	100	42.618	ENSPCOG00000022695	URB1	99	42.738	Propithecus_coquereli
ENSTNIG00000016277	urb1	99	41.810	ENSPVAG00000000889	URB1	99	41.906	Pteropus_vampyrus
ENSTNIG00000016277	urb1	99	64.535	ENSPNYG00000010589	urb1	99	64.730	Pundamilia_nyererei
ENSTNIG00000016277	urb1	99	48.274	ENSPNAG00000019324	urb1	99	48.583	Pygocentrus_nattereri
ENSTNIG00000016277	urb1	99	42.719	ENSRNOG00000002080	Urb1	99	42.719	Rattus_norvegicus
ENSTNIG00000016277	urb1	100	42.876	ENSRBIG00000033122	URB1	99	42.838	Rhinopithecus_bieti
ENSTNIG00000016277	urb1	100	42.807	ENSRROG00000040237	URB1	99	42.769	Rhinopithecus_roxellana
ENSTNIG00000016277	urb1	99	42.995	ENSSBOG00000027672	URB1	99	43.001	Saimiri_boliviensis_boliviensis
ENSTNIG00000016277	urb1	99	42.419	ENSSHAG00000005140	URB1	99	42.463	Sarcophilus_harrisii
ENSTNIG00000016277	urb1	92	54.727	ENSSFOG00015000339	urb1	97	54.727	Scleropages_formosus
ENSTNIG00000016277	urb1	99	67.643	ENSSMAG00000003782	urb1	99	68.131	Scophthalmus_maximus
ENSTNIG00000016277	urb1	99	70.717	ENSSDUG00000012313	urb1	99	70.717	Seriola_dumerili
ENSTNIG00000016277	urb1	99	70.405	ENSSLDG00000023179	urb1	99	70.405	Seriola_lalandi_dorsalis
ENSTNIG00000016277	urb1	99	43.758	ENSSPUG00000012447	URB1	98	43.846	Sphenodon_punctatus
ENSTNIG00000016277	urb1	99	66.977	ENSSPAG00000006325	urb1	99	66.977	Stegastes_partitus
ENSTNIG00000016277	urb1	99	41.913	ENSSSCG00000032024	URB1	99	42.052	Sus_scrofa
ENSTNIG00000016277	urb1	75	47.839	ENSTGUG00000013442	URB1	100	47.839	Taeniopygia_guttata
ENSTNIG00000016277	urb1	99	81.035	ENSTRUG00000009372	urb1	99	81.035	Takifugu_rubripes
ENSTNIG00000016277	urb1	78	47.742	ENSTBEG00000010044	URB1	79	47.742	Tupaia_belangeri
ENSTNIG00000016277	urb1	89	49.945	ENSTTRG00000007712	URB1	92	48.444	Tursiops_truncatus
ENSTNIG00000016277	urb1	99	42.958	ENSUAMG00000012231	URB1	99	43.228	Ursus_americanus
ENSTNIG00000016277	urb1	88	45.023	ENSUMAG00000017419	URB1	94	44.778	Ursus_maritimus
ENSTNIG00000016277	urb1	66	65.517	ENSVPAG00000001164	URB1	66	65.517	Vicugna_pacos
ENSTNIG00000016277	urb1	99	42.851	ENSVVUG00000000551	URB1	99	42.983	Vulpes_vulpes
ENSTNIG00000016277	urb1	99	43.400	ENSXETG00000009895	urb1	99	43.450	Xenopus_tropicalis
ENSTNIG00000016277	urb1	99	59.385	ENSXCOG00000005500	urb1	97	63.412	Xiphophorus_couchianus
ENSTNIG00000016277	urb1	99	59.991	ENSXMAG00000007253	urb1	97	63.498	Xiphophorus_maculatus