EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTNIG00000016902 (Gene tree)
Gene ID
-
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein%2C cytoplasmic 4 (inducible form)
Gene Type
protein_coding
Species
Tetraodon_nigroviridis
Status
putative
Strand
Minus strand
Length
6330 bases
Position
chr10:3537534-3543863
Accession
ZDB-GENE-030131-9663
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTNIP00000012013PABPPF00658.185.4e-3111
ENSTNIP00000020020PABPPF00658.186.1e-3111
ENSTNIP00000012013RRM_5PF13893.69e-1011
ENSTNIP00000020020RRM_5PF13893.61e-0911
ENSTNIP00000012013RRM_1PF00076.221.6e-9014
ENSTNIP00000012013RRM_1PF00076.221.6e-9024
ENSTNIP00000012013RRM_1PF00076.221.6e-9034
ENSTNIP00000012013RRM_1PF00076.221.6e-9044
ENSTNIP00000020020RRM_1PF00076.221.9e-9014
ENSTNIP00000020020RRM_1PF00076.221.9e-9024
ENSTNIP00000020020RRM_1PF00076.221.9e-9034
ENSTNIP00000020020RRM_1PF00076.221.9e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTNIT00000012203-2298-ENSTNIP00000012013619 (aa)-H3CUS9
ENSTNIT00000020251-2346-ENSTNIP00000020020635 (aa)-H3DHM6
Gene Model
Click here to download ENSTNIG00000016902's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000016902's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTNIG00000016902pabpc46036.145ENSTNIG00000011312elavl28836.145
ENSTNIG00000016902pabpc45337.500ENSTNIG00000007201-5238.372
ENSTNIG00000016902pabpc46036.145ENSTNIG00000018572elavl39236.145
ENSTNIG00000016902pabpc45935.632ENSTNIG00000016496RBMS15435.632
ENSTNIG00000016902pabpc45338.636ENSTNIG00000016009-7139.535
ENSTNIG00000016902pabpc46034.940ENSTNIG00000015485elavl48734.940
ENSTNIG00000016902pabpc49971.894ENSTNIG00000009153pabpc1b9971.894
ENSTNIG00000016902pabpc49871.003ENSTNIG00000013307pabpc1a9971.317
ENSTNIG00000016902pabpc45832.418ENSTNIG00000013091TIAL18232.911
ENSTNIG00000016902pabpc45933.684ENSTNIG00000013818-5133.684
ENSTNIG00000016902pabpc46038.889ENSTNIG00000017904rbm39b5338.889
ENSTNIG00000016902pabpc49764.320ENSTNIG00000017903pabpc1l9864.320
ENSTNIG00000016902pabpc45935.789ENSTNIG00000014563rbms2a5234.951
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTNIG00000016902pabpc49979.516ENSG00000090621PABPC49996.396Homo_sapiens
ENSTNIG00000016902pabpc49988.673ENSAPOG00000001161pabpc410088.357Acanthochromis_polyacanthus
ENSTNIG00000016902pabpc49746.787ENSAMEG00000015083-9746.787Ailuropoda_melanoleuca
ENSTNIG00000016902pabpc49975.716ENSAMEG00000011535-10075.716Ailuropoda_melanoleuca
ENSTNIG00000016902pabpc410087.342ENSACIG00000023343pabpc410087.658Amphilophus_citrinellus
ENSTNIG00000016902pabpc49988.673ENSAOCG00000021529pabpc410088.357Amphiprion_ocellaris
ENSTNIG00000016902pabpc49988.673ENSAPEG00000019196pabpc410088.357Amphiprion_percula
ENSTNIG00000016902pabpc49988.103ENSATEG00000007402pabpc410087.956Anabas_testudineus
ENSTNIG00000016902pabpc49981.388ENSAPLG00000009729-9981.388Anas_platyrhynchos
ENSTNIG00000016902pabpc49879.751ENSACAG00000002544PABPC49979.751Anolis_carolinensis
ENSTNIG00000016902pabpc49978.213ENSANAG00000025079PABPC410078.213Aotus_nancymaae
ENSTNIG00000016902pabpc410087.619ENSACLG00000019558pabpc410087.937Astatotilapia_calliptera
ENSTNIG00000016902pabpc49978.855ENSAMXG00000018779pabpc49979.173Astyanax_mexicanus
ENSTNIG00000016902pabpc49976.733ENSBTAG00000017125PABPC410077.196Bos_taurus
ENSTNIG00000016902pabpc45883.234ENSBTAG00000048536-9583.234Bos_taurus
ENSTNIG00000016902pabpc46686.747ENSCJAG00000045953-8271.362Callithrix_jacchus
ENSTNIG00000016902pabpc49978.213ENSCJAG00000002512-10078.213Callithrix_jacchus
ENSTNIG00000016902pabpc49978.391ENSCAFG00000003081PABPC410078.391Canis_familiaris
ENSTNIG00000016902pabpc49975.867ENSCAFG00020004161PABPC410075.867Canis_lupus_dingo
ENSTNIG00000016902pabpc49975.716ENSCHIG00000019398-10075.716Capra_hircus
ENSTNIG00000016902pabpc49964.623ENSCHIG00000023385-10064.623Capra_hircus
ENSTNIG00000016902pabpc49978.213ENSTSYG00000006532PABPC410078.213Carlito_syrichta
ENSTNIG00000016902pabpc49979.579ENSCAPG00000015984PABPC410079.579Cavia_aperea
ENSTNIG00000016902pabpc49978.213ENSCPOG00000009552PABPC410079.615Cavia_porcellus
ENSTNIG00000016902pabpc48790.843ENSCCAG00000037306PABPC410078.165Cebus_capucinus
ENSTNIG00000016902pabpc49978.213ENSCATG00000042164PABPC410078.213Cercocebus_atys
ENSTNIG00000016902pabpc49977.429ENSCLAG00000011899PABPC410078.056Chinchilla_lanigera
ENSTNIG00000016902pabpc49975.716ENSCSAG00000001135PABPC410075.716Chlorocebus_sabaeus
ENSTNIG00000016902pabpc48290.571ENSCHOG00000005327PABPC47690.571Choloepus_hoffmanni
ENSTNIG00000016902pabpc49982.166ENSCPBG00000001038PABPC49982.166Chrysemys_picta_bellii
ENSTNIG00000016902pabpc49878.378ENSCANG00000034177PABPC410078.378Colobus_angolensis_palliatus
ENSTNIG00000016902pabpc49879.316ENSCGRG00001018166Pabpc410079.167Cricetulus_griseus_chok1gshd
ENSTNIG00000016902pabpc49778.374ENSCGRG00000009777Pabpc410079.350Cricetulus_griseus_crigri
ENSTNIG00000016902pabpc410087.719ENSCSEG00000000130pabpc410088.038Cynoglossus_semilaevis
ENSTNIG00000016902pabpc49987.500ENSCVAG00000019246pabpc410087.419Cyprinodon_variegatus
ENSTNIG00000016902pabpc49884.848ENSDARG00000059259pabpc410084.793Danio_rerio
ENSTNIG00000016902pabpc49876.543ENSDNOG00000018444-10076.543Dasypus_novemcinctus
ENSTNIG00000016902pabpc49977.006ENSDORG00000011581Pabpc410077.315Dipodomys_ordii
ENSTNIG00000016902pabpc49990.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSTNIG00000016902pabpc48549.546ENSETEG00000009172-9949.725Echinops_telfairi
ENSTNIG00000016902pabpc49773.259ENSEBUG00000013782pabpc49973.428Eptatretus_burgeri
ENSTNIG00000016902pabpc49873.496ENSEBUG00000000992pabpc49973.496Eptatretus_burgeri
ENSTNIG00000016902pabpc49975.716ENSEASG00005014119PABPC410075.716Equus_asinus_asinus
ENSTNIG00000016902pabpc49975.716ENSECAG00000009396PABPC410075.716Equus_caballus
ENSTNIG00000016902pabpc49775.926ENSEEUG00000002962PABPC410075.492Erinaceus_europaeus
ENSTNIG00000016902pabpc49885.032ENSELUG00000003195pabpc410084.194Esox_lucius
ENSTNIG00000016902pabpc49978.391ENSFCAG00000015254-10078.391Felis_catus
ENSTNIG00000016902pabpc49981.659ENSFALG00000000543PABPC49981.659Ficedula_albicollis
ENSTNIG00000016902pabpc49975.264ENSFDAG00000020016-10075.566Fukomys_damarensis
ENSTNIG00000016902pabpc47959.504ENSFDAG00000010581-9946.021Fukomys_damarensis
ENSTNIG00000016902pabpc49986.901ENSFHEG00000007548pabpc410087.220Fundulus_heteroclitus
ENSTNIG00000016902pabpc410082.893ENSGMOG00000019025pabpc410083.204Gadus_morhua
ENSTNIG00000016902pabpc49981.369ENSGALG00000003800PABPC49981.369Gallus_gallus
ENSTNIG00000016902pabpc49996.429ENSGAFG00000018195pabpc49898.889Gambusia_affinis
ENSTNIG00000016902pabpc410086.124ENSGACG00000007179pabpc410086.443Gasterosteus_aculeatus
ENSTNIG00000016902pabpc49981.847ENSGAGG00000001888PABPC49981.847Gopherus_agassizii
ENSTNIG00000016902pabpc49978.213ENSGGOG00000004002PABPC410078.213Gorilla_gorilla
ENSTNIG00000016902pabpc410087.460ENSHBUG00000020206pabpc410087.778Haplochromis_burtoni
ENSTNIG00000016902pabpc49978.056ENSHGLG00000011162PABPC410078.056Heterocephalus_glaber_female
ENSTNIG00000016902pabpc49978.056ENSHGLG00100001580PABPC410078.056Heterocephalus_glaber_male
ENSTNIG00000016902pabpc410087.540ENSHCOG00000012694pabpc410087.700Hippocampus_comes
ENSTNIG00000016902pabpc49784.839ENSIPUG00000016620pabpc410084.772Ictalurus_punctatus
ENSTNIG00000016902pabpc49977.586ENSSTOG00000010416PABPC410079.355Ictidomys_tridecemlineatus
ENSTNIG00000016902pabpc49975.926ENSJJAG00000007781Pabpc410076.235Jaculus_jaculus
ENSTNIG00000016902pabpc49988.122ENSKMAG00000013597pabpc49988.283Kryptolebias_marmoratus
ENSTNIG00000016902pabpc49987.460ENSLBEG00000013654pabpc410087.778Labrus_bergylta
ENSTNIG00000016902pabpc49981.476ENSLACG00000011907PABPC49981.476Latimeria_chalumnae
ENSTNIG00000016902pabpc49983.931ENSLOCG00000001877pabpc410084.252Lepisosteus_oculatus
ENSTNIG00000016902pabpc49979.677ENSLAFG00000000151PABPC410079.677Loxodonta_africana
ENSTNIG00000016902pabpc49978.213ENSMFAG00000041481PABPC410078.213Macaca_fascicularis
ENSTNIG00000016902pabpc49975.716ENSMMUG00000007497PABPC410075.716Macaca_mulatta
ENSTNIG00000016902pabpc49978.056ENSMNEG00000043054PABPC410078.056Macaca_nemestrina
ENSTNIG00000016902pabpc49978.213ENSMLEG00000040716PABPC410078.213Mandrillus_leucophaeus
ENSTNIG00000016902pabpc49988.997ENSMAMG00000010025pabpc410088.836Mastacembelus_armatus
ENSTNIG00000016902pabpc410087.460ENSMZEG00005006141pabpc410087.778Maylandia_zebra
ENSTNIG00000016902pabpc49877.607ENSMGAG00000005408PABPC49977.797Meleagris_gallopavo
ENSTNIG00000016902pabpc46681.325ENSMAUG00000001295-9172.308Mesocricetus_auratus
ENSTNIG00000016902pabpc45880.117ENSMAUG00000004089-9680.117Mesocricetus_auratus
ENSTNIG00000016902pabpc49873.313ENSMAUG00000019763-10073.313Mesocricetus_auratus
ENSTNIG00000016902pabpc48875.923ENSMICG00000016633-10078.947Microcebus_murinus
ENSTNIG00000016902pabpc49870.310ENSMICG00000036729-10070.310Microcebus_murinus
ENSTNIG00000016902pabpc410079.294ENSMOCG00000006763Pabpc410079.294Microtus_ochrogaster
ENSTNIG00000016902pabpc410088.622ENSMMOG00000002363pabpc410088.942Mola_mola
ENSTNIG00000016902pabpc46070.400ENSMODG00000018051-9670.400Monodelphis_domestica
ENSTNIG00000016902pabpc49779.907ENSMODG00000017657-9979.421Monodelphis_domestica
ENSTNIG00000016902pabpc49988.226ENSMALG00000011017pabpc410088.076Monopterus_albus
ENSTNIG00000016902pabpc49974.359MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSTNIG00000016902pabpc49870.123MGP_CAROLIEiJ_G0024864-10071.429Mus_caroli
ENSTNIG00000016902pabpc49977.429ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSTNIG00000016902pabpc49874.924MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSTNIG00000016902pabpc49870.077MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSTNIG00000016902pabpc49544.079ENSMPUG00000006836-10044.079Mustela_putorius_furo
ENSTNIG00000016902pabpc49975.867ENSMPUG00000014414-10075.867Mustela_putorius_furo
ENSTNIG00000016902pabpc49979.677ENSMLUG00000012068PABPC410079.677Myotis_lucifugus
ENSTNIG00000016902pabpc49979.677ENSNGAG00000018292Pabpc410079.677Nannospalax_galili
ENSTNIG00000016902pabpc46698.182ENSNBRG00000010047-7198.182Neolamprologus_brichardi
ENSTNIG00000016902pabpc46198.558ENSNBRG00000009708pabpc49898.558Neolamprologus_brichardi
ENSTNIG00000016902pabpc49978.213ENSNLEG00000011928PABPC410078.213Nomascus_leucogenys
ENSTNIG00000016902pabpc48292.063ENSOPRG00000011984PABPC48592.063Ochotona_princeps
ENSTNIG00000016902pabpc45482.857ENSODEG00000013457-10082.857Octodon_degus
ENSTNIG00000016902pabpc49979.100ENSODEG00000006592-10079.100Octodon_degus
ENSTNIG00000016902pabpc48587.243ENSODEG00000017434-10067.992Octodon_degus
ENSTNIG00000016902pabpc410087.560ENSONIG00000008176pabpc410088.038Oreochromis_niloticus
ENSTNIG00000016902pabpc49981.369ENSOANG00000010001PABPC49981.369Ornithorhynchus_anatinus
ENSTNIG00000016902pabpc48290.385ENSOCUG00000000562PABPC48876.063Oryctolagus_cuniculus
ENSTNIG00000016902pabpc49995.679ENSORLG00000017479pabpc49995.385Oryzias_latipes
ENSTNIG00000016902pabpc49995.679ENSORLG00020018644pabpc410095.385Oryzias_latipes_hni
ENSTNIG00000016902pabpc49995.679ENSORLG00015015042pabpc410095.385Oryzias_latipes_hsok
ENSTNIG00000016902pabpc49986.731ENSOMEG00000014410pabpc49986.284Oryzias_melastigma
ENSTNIG00000016902pabpc49976.498ENSOGAG00000004067PABPC410077.112Otolemur_garnettii
ENSTNIG00000016902pabpc49975.716ENSOARG00000020060PABPC410075.716Ovis_aries
ENSTNIG00000016902pabpc49978.213ENSPPAG00000043625PABPC410078.213Pan_paniscus
ENSTNIG00000016902pabpc49978.391ENSPPRG00000024727PABPC410078.391Panthera_pardus
ENSTNIG00000016902pabpc49978.391ENSPTIG00000005829PABPC410078.391Panthera_tigris_altaica
ENSTNIG00000016902pabpc49978.213ENSPTRG00000000573PABPC410078.213Pan_troglodytes
ENSTNIG00000016902pabpc49978.213ENSPANG00000009484PABPC410078.233Papio_anubis
ENSTNIG00000016902pabpc410085.215ENSPKIG00000025356pabpc410085.215Paramormyrops_kingsleyae
ENSTNIG00000016902pabpc49982.166ENSPSIG00000016892PABPC49982.166Pelodiscus_sinensis
ENSTNIG00000016902pabpc410086.634ENSPMGG00000009073pabpc410087.279Periophthalmus_magnuspinnatus
ENSTNIG00000016902pabpc49975.701ENSPEMG00000024193-9975.868Peromyscus_maniculatus_bairdii
ENSTNIG00000016902pabpc49978.247ENSPEMG00000023569-10078.357Peromyscus_maniculatus_bairdii
ENSTNIG00000016902pabpc48871.902ENSPMAG00000002836pabpc410072.426Petromyzon_marinus
ENSTNIG00000016902pabpc49568.685ENSPMAG00000007885pabpc49968.712Petromyzon_marinus
ENSTNIG00000016902pabpc49694.148ENSPCIG00000020674PABPC49994.148Phascolarctos_cinereus
ENSTNIG00000016902pabpc49986.262ENSPFOG00000002682pabpc410086.581Poecilia_formosa
ENSTNIG00000016902pabpc49986.422ENSPLAG00000010112pabpc410086.741Poecilia_latipinna
ENSTNIG00000016902pabpc49887.500ENSPMEG00000019739pabpc410086.581Poecilia_mexicana
ENSTNIG00000016902pabpc49986.741ENSPREG00000001589pabpc410087.061Poecilia_reticulata
ENSTNIG00000016902pabpc49975.716ENSPPYG00000001506PABPC410075.716Pongo_abelii
ENSTNIG00000016902pabpc49970.890ENSPCAG00000003341PABPC410070.890Procavia_capensis
ENSTNIG00000016902pabpc49869.363ENSPCOG00000025882-9869.363Propithecus_coquereli
ENSTNIG00000016902pabpc48790.843ENSPCOG00000023725-10078.091Propithecus_coquereli
ENSTNIG00000016902pabpc49874.080ENSPVAG00000002187PABPC410074.080Pteropus_vampyrus
ENSTNIG00000016902pabpc410087.619ENSPNYG00000006134pabpc410087.937Pundamilia_nyererei
ENSTNIG00000016902pabpc49984.945ENSPNAG00000024355pabpc410085.261Pygocentrus_nattereri
ENSTNIG00000016902pabpc49974.691ENSRNOG00000028592AABR07035074.110075.000Rattus_norvegicus
ENSTNIG00000016902pabpc49976.543ENSRNOG00000015642Pabpc410076.852Rattus_norvegicus
ENSTNIG00000016902pabpc49978.213ENSRBIG00000039761PABPC410078.213Rhinopithecus_bieti
ENSTNIG00000016902pabpc49978.213ENSRROG00000033355PABPC410078.213Rhinopithecus_roxellana
ENSTNIG00000016902pabpc49978.056ENSSBOG00000026193PABPC410078.233Saimiri_boliviensis_boliviensis
ENSTNIG00000016902pabpc49781.558ENSSHAG00000018139PABPC49981.034Sarcophilus_harrisii
ENSTNIG00000016902pabpc49984.150ENSSFOG00015023514pabpc410084.150Scleropages_formosus
ENSTNIG00000016902pabpc410087.560ENSSMAG00000009007pabpc410087.879Scophthalmus_maximus
ENSTNIG00000016902pabpc49988.835ENSSDUG00000012683pabpc410088.676Seriola_dumerili
ENSTNIG00000016902pabpc49988.835ENSSLDG00000013025pabpc410088.676Seriola_lalandi_dorsalis
ENSTNIG00000016902pabpc49969.080ENSSARG00000000310PABPC410069.080Sorex_araneus
ENSTNIG00000016902pabpc49982.315ENSSPUG00000003204PABPC49982.315Sphenodon_punctatus
ENSTNIG00000016902pabpc49988.997ENSSPAG00000009252pabpc410088.517Stegastes_partitus
ENSTNIG00000016902pabpc49978.213ENSSSCG00000003660-10078.233Sus_scrofa
ENSTNIG00000016902pabpc48842.068ENSSSCG00000036170-9642.068Sus_scrofa
ENSTNIG00000016902pabpc49977.204ENSTGUG00000001266PABPC49977.964Taeniopygia_guttata
ENSTNIG00000016902pabpc410090.590ENSTRUG00000005907pabpc410091.069Takifugu_rubripes
ENSTNIG00000016902pabpc49864.214ENSTBEG00000009035PABPC410064.214Tupaia_belangeri
ENSTNIG00000016902pabpc49856.762ENSTTRG00000014340PABPC410063.545Tursiops_truncatus
ENSTNIG00000016902pabpc49978.391ENSUAMG00000000303PABPC410078.391Ursus_americanus
ENSTNIG00000016902pabpc49990.865ENSUMAG00000019585PABPC410090.865Ursus_maritimus
ENSTNIG00000016902pabpc46269.617ENSVPAG00000010041PABPC45169.617Vicugna_pacos
ENSTNIG00000016902pabpc49978.391ENSVVUG00000005215PABPC410078.391Vulpes_vulpes
ENSTNIG00000016902pabpc410078.425ENSXETG00000010946pabpc410078.425Xenopus_tropicalis
ENSTNIG00000016902pabpc46296.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSTNIG00000016902pabpc49995.467ENSXCOG00000013190pabpc49694.340Xiphophorus_couchianus
ENSTNIG00000016902pabpc49986.581ENSXMAG00000019007pabpc410086.901Xiphophorus_maculatus

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