EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000017487 (Gene tree)
Gene ID: -
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 28790 bases
Position: chrUn_random:14107780-14136569
Accession: ZDB-GENE-130530-559
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000020631	ResIII	PF04851.15	4.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000020864	-	7374	-	ENSTNIP00000020631	2458 (aa)	-	H3DJD5

Gene Model

Click here to download ENSTNIG00000017487's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000017487's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000017487	chd6	55	74.886	ENSTNIG00000003825	chd9	71	74.545
ENSTNIG00000017487	chd6	73	63.983	ENSTNIG00000002647	chd7	82	63.725
ENSTNIG00000017487	chd6	57	59.467	ENSTNIG00000007932	chd8	61	60.178

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000017487	chd6	100	57.371	ENSG00000124177	CHD6	98	79.151	Homo_sapiens
ENSTNIG00000017487	chd6	99	84.214	ENSAPOG00000013736	chd6	77	84.828	Acanthochromis_polyacanthus
ENSTNIG00000017487	chd6	57	77.373	ENSAMEG00000009496	CHD6	51	77.373	Ailuropoda_melanoleuca
ENSTNIG00000017487	chd6	99	84.337	ENSATEG00000005608	chd6	78	84.530	Anabas_testudineus
ENSTNIG00000017487	chd6	83	75.659	ENSAPLG00000015592	CHD6	73	77.208	Anas_platyrhynchos
ENSTNIG00000017487	chd6	83	71.071	ENSACAG00000006842	CHD6	72	72.003	Anolis_carolinensis
ENSTNIG00000017487	chd6	91	73.106	ENSAMXG00000009576	chd6	75	73.266	Astyanax_mexicanus
ENSTNIG00000017487	chd6	57	77.231	ENSBTAG00000005733	CHD6	51	77.231	Bos_taurus
ENSTNIG00000017487	chd6	86	77.114	ENSCJAG00000017920	CHD6	99	80.037	Callithrix_jacchus
ENSTNIG00000017487	chd6	64	70.206	ENSCAFG00000009236	CHD6	51	77.373	Canis_familiaris
ENSTNIG00000017487	chd6	64	69.894	ENSCAFG00020012906	CHD6	95	82.852	Canis_lupus_dingo
ENSTNIG00000017487	chd6	85	77.231	ENSCHIG00000017606	CHD6	62	77.231	Capra_hircus
ENSTNIG00000017487	chd6	74	77.454	ENSTSYG00000014635	CHD6	79	77.759	Carlito_syrichta
ENSTNIG00000017487	chd6	86	75.537	ENSCPOG00000015641	CHD6	75	77.192	Cavia_porcellus
ENSTNIG00000017487	chd6	100	57.200	ENSCCAG00000036828	CHD6	99	80.220	Cebus_capucinus
ENSTNIG00000017487	chd6	100	57.467	ENSCATG00000039248	CHD6	99	80.220	Cercocebus_atys
ENSTNIG00000017487	chd6	92	72.614	ENSCLAG00000013743	CHD6	75	77.373	Chinchilla_lanigera
ENSTNIG00000017487	chd6	58	75.711	ENSCSAG00000013997	CHD6	51	77.445	Chlorocebus_sabaeus
ENSTNIG00000017487	chd6	67	75.862	ENSCHOG00000012647	CHD6	61	74.799	Choloepus_hoffmanni
ENSTNIG00000017487	chd6	82	77.021	ENSCPBG00000019382	CHD6	73	77.461	Chrysemys_picta_bellii
ENSTNIG00000017487	chd6	100	57.450	ENSCANG00000043435	CHD6	99	80.220	Colobus_angolensis_palliatus
ENSTNIG00000017487	chd6	84	76.945	ENSCGRG00001002694	Chd6	74	76.945	Cricetulus_griseus_chok1gshd
ENSTNIG00000017487	chd6	100	77.799	ENSDARG00000017244	chd6	84	77.335	Danio_rerio
ENSTNIG00000017487	chd6	82	77.373	ENSDNOG00000004176	CHD6	73	77.373	Dasypus_novemcinctus
ENSTNIG00000017487	chd6	82	77.231	ENSEASG00005023433	CHD6	95	84.200	Equus_asinus_asinus
ENSTNIG00000017487	chd6	82	77.730	ENSECAG00000011761	CHD6	74	77.730	Equus_caballus
ENSTNIG00000017487	chd6	79	77.133	ENSELUG00000012309	chd6	93	76.892	Esox_lucius
ENSTNIG00000017487	chd6	82	77.373	ENSFCAG00000003572	CHD6	74	77.373	Felis_catus
ENSTNIG00000017487	chd6	82	76.782	ENSFALG00000012563	CHD6	72	77.147	Ficedula_albicollis
ENSTNIG00000017487	chd6	87	77.231	ENSFDAG00000013791	CHD6	76	77.231	Fukomys_damarensis
ENSTNIG00000017487	chd6	85	76.510	ENSGMOG00000011715	chd6	87	76.436	Gadus_morhua
ENSTNIG00000017487	chd6	100	57.331	ENSGGOG00000013123	CHD6	99	80.220	Gorilla_gorilla
ENSTNIG00000017487	chd6	99	84.066	ENSHBUG00000014701	chd6	75	84.676	Haplochromis_burtoni
ENSTNIG00000017487	chd6	85	77.231	ENSHGLG00000004548	CHD6	75	77.231	Heterocephalus_glaber_female
ENSTNIG00000017487	chd6	85	77.231	ENSHGLG00100006401	CHD6	75	77.231	Heterocephalus_glaber_male
ENSTNIG00000017487	chd6	85	81.899	ENSIPUG00000003692	chd6	74	81.899	Ictalurus_punctatus
ENSTNIG00000017487	chd6	86	77.516	ENSSTOG00000013382	CHD6	75	77.516	Ictidomys_tridecemlineatus
ENSTNIG00000017487	chd6	82	77.949	ENSLACG00000010881	CHD6	72	78.329	Latimeria_chalumnae
ENSTNIG00000017487	chd6	81	79.059	ENSLOCG00000007386	chd6	74	79.384	Lepisosteus_oculatus
ENSTNIG00000017487	chd6	88	75.642	ENSLAFG00000012144	CHD6	77	77.445	Loxodonta_africana
ENSTNIG00000017487	chd6	100	57.399	ENSMFAG00000032830	CHD6	99	80.220	Macaca_fascicularis
ENSTNIG00000017487	chd6	100	57.399	ENSMMUG00000020458	CHD6	99	80.220	Macaca_mulatta
ENSTNIG00000017487	chd6	100	57.599	ENSMNEG00000040847	CHD6	99	80.220	Macaca_nemestrina
ENSTNIG00000017487	chd6	100	57.559	ENSMLEG00000031965	CHD6	99	80.220	Mandrillus_leucophaeus
ENSTNIG00000017487	chd6	99	85.203	ENSMAMG00000013111	chd6	77	85.336	Mastacembelus_armatus
ENSTNIG00000017487	chd6	84	73.778	ENSMGAG00000001121	CHD6	73	75.425	Meleagris_gallopavo
ENSTNIG00000017487	chd6	83	75.711	ENSMICG00000016641	CHD6	99	80.220	Microcebus_murinus
ENSTNIG00000017487	chd6	80	75.731	ENSMODG00000000720	-	80	77.711	Monodelphis_domestica
ENSTNIG00000017487	chd6	59	74.334	MGP_CAROLIEiJ_G0024604	Chd6	80	85.084	Mus_caroli
ENSTNIG00000017487	chd6	100	56.827	ENSMUSG00000057133	Chd6	80	85.189	Mus_musculus
ENSTNIG00000017487	chd6	100	56.706	MGP_PahariEiJ_G0026048	Chd6	80	84.979	Mus_pahari
ENSTNIG00000017487	chd6	100	56.827	MGP_SPRETEiJ_G0025526	Chd6	80	85.189	Mus_spretus
ENSTNIG00000017487	chd6	57	77.334	ENSMPUG00000017695	CHD6	51	77.334	Mustela_putorius_furo
ENSTNIG00000017487	chd6	82	77.159	ENSMLUG00000016247	CHD6	74	77.159	Myotis_lucifugus
ENSTNIG00000017487	chd6	92	81.376	ENSNBRG00000013839	chd6	83	81.503	Neolamprologus_brichardi
ENSTNIG00000017487	chd6	88	74.290	ENSNLEG00000006496	CHD6	83	76.017	Nomascus_leucogenys
ENSTNIG00000017487	chd6	82	75.089	ENSOPRG00000013376	-	74	75.089	Ochotona_princeps
ENSTNIG00000017487	chd6	91	87.674	ENSONIG00000000393	chd6	83	88.685	Oreochromis_niloticus
ENSTNIG00000017487	chd6	67	76.177	ENSOANG00000014347	CHD6	61	76.177	Ornithorhynchus_anatinus
ENSTNIG00000017487	chd6	87	75.798	ENSOCUG00000012394	CHD6	75	77.516	Oryctolagus_cuniculus
ENSTNIG00000017487	chd6	98	81.958	ENSORLG00020021891	chd6	95	92.800	Oryzias_latipes_hni
ENSTNIG00000017487	chd6	88	75.503	ENSOGAG00000002427	CHD6	76	77.231	Otolemur_garnettii
ENSTNIG00000017487	chd6	85	75.946	ENSOARG00000002597	CHD6	75	75.946	Ovis_aries
ENSTNIG00000017487	chd6	82	77.373	ENSPPRG00000014756	CHD6	74	77.373	Panthera_pardus
ENSTNIG00000017487	chd6	57	77.231	ENSPTIG00000011094	CHD6	51	77.231	Panthera_tigris_altaica
ENSTNIG00000017487	chd6	100	57.410	ENSPTRG00000013504	CHD6	99	80.220	Pan_troglodytes
ENSTNIG00000017487	chd6	100	57.559	ENSPANG00000025554	CHD6	99	80.220	Papio_anubis
ENSTNIG00000017487	chd6	90	75.588	ENSPKIG00000005578	chd6	84	75.696	Paramormyrops_kingsleyae
ENSTNIG00000017487	chd6	92	79.459	ENSPMGG00000014877	chd6	91	78.755	Periophthalmus_magnuspinnatus
ENSTNIG00000017487	chd6	83	75.398	ENSPCIG00000028037	CHD6	74	77.263	Phascolarctos_cinereus
ENSTNIG00000017487	chd6	98	82.393	ENSPLAG00000003128	chd6	77	82.025	Poecilia_latipinna
ENSTNIG00000017487	chd6	98	82.303	ENSPREG00000022653	chd6	99	92.491	Poecilia_reticulata
ENSTNIG00000017487	chd6	100	57.387	ENSPPYG00000011016	CHD6	51	77.445	Pongo_abelii
ENSTNIG00000017487	chd6	83	75.503	ENSPCOG00000001089	CHD6	99	80.220	Propithecus_coquereli
ENSTNIG00000017487	chd6	92	82.821	ENSPNYG00000022516	chd6	83	83.450	Pundamilia_nyererei
ENSTNIG00000017487	chd6	89	75.235	ENSPNAG00000012825	chd6	76	75.234	Pygocentrus_nattereri
ENSTNIG00000017487	chd6	59	73.925	ENSRNOG00000016744	Chd6	51	76.517	Rattus_norvegicus
ENSTNIG00000017487	chd6	86	77.257	ENSSBOG00000022089	CHD6	99	80.220	Saimiri_boliviensis_boliviensis
ENSTNIG00000017487	chd6	83	75.363	ENSSHAG00000017072	CHD6	75	77.153	Sarcophilus_harrisii
ENSTNIG00000017487	chd6	92	75.171	ENSSFOG00015012920	chd6	80	75.047	Scleropages_formosus
ENSTNIG00000017487	chd6	84	76.231	ENSSSCG00000007360	CHD6	74	76.231	Sus_scrofa
ENSTNIG00000017487	chd6	82	76.950	ENSTGUG00000003179	CHD6	75	76.950	Taeniopygia_guttata
ENSTNIG00000017487	chd6	83	79.881	ENSTTRG00000013438	CHD6	75	75.161	Tursiops_truncatus
ENSTNIG00000017487	chd6	57	75.892	ENSUAMG00000024036	CHD6	95	82.852	Ursus_americanus
ENSTNIG00000017487	chd6	57	77.302	ENSUMAG00000002017	CHD6	95	82.852	Ursus_maritimus
ENSTNIG00000017487	chd6	73	72.918	ENSVPAG00000007941	CHD6	65	72.918	Vicugna_pacos
ENSTNIG00000017487	chd6	89	68.894	ENSVVUG00000029164	CHD6	73	75.874	Vulpes_vulpes
ENSTNIG00000017487	chd6	82	68.439	ENSXETG00000021445	chd6	71	69.002	Xenopus_tropicalis