EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000017615 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 13776 bases
Position: chrUn_random:20214403-20228178
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000020762	XRN_N	PF03159.18	1.8e-94	1	1
ENSTNIP00000004886	XRN_N	PF03159.18	1.9e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000020995	-	5213	-	ENSTNIP00000020762	1660 (aa)	-	H3DJR6
ENSTNIT00000005032	-	5378	-	ENSTNIP00000004886	1715 (aa)	-	H3C9G4

Gene Model

Click here to download ENSTNIG00000017615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000017615's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000017615	xrn1	100	58.945	ENSG00000114127	XRN1	95	94.118	Homo_sapiens
ENSTNIG00000017615	xrn1	94	83.279	ENSAPOG00000000622	xrn1	99	83.143	Acanthochromis_polyacanthus
ENSTNIG00000017615	xrn1	96	58.830	ENSAMEG00000012538	XRN1	100	57.577	Ailuropoda_melanoleuca
ENSTNIG00000017615	xrn1	93	82.555	ENSACIG00000001057	xrn1	98	81.714	Amphilophus_citrinellus
ENSTNIG00000017615	xrn1	94	80.775	ENSAOCG00000014097	xrn1	99	80.426	Amphiprion_ocellaris
ENSTNIG00000017615	xrn1	100	73.387	ENSAPEG00000006620	xrn1	95	82.492	Amphiprion_percula
ENSTNIG00000017615	xrn1	95	78.752	ENSATEG00000009752	xrn1	99	78.802	Anabas_testudineus
ENSTNIG00000017615	xrn1	99	57.961	ENSAPLG00000004905	XRN1	100	57.574	Anas_platyrhynchos
ENSTNIG00000017615	xrn1	98	66.085	ENSACAG00000004985	XRN1	95	65.630	Anolis_carolinensis
ENSTNIG00000017615	xrn1	100	59.007	ENSANAG00000029013	XRN1	99	70.166	Aotus_nancymaae
ENSTNIG00000017615	xrn1	100	72.408	ENSACLG00000004806	xrn1	99	71.870	Astatotilapia_calliptera
ENSTNIG00000017615	xrn1	100	63.468	ENSAMXG00000019370	xrn1	94	96.078	Astyanax_mexicanus
ENSTNIG00000017615	xrn1	93	68.576	ENSBTAG00000011524	XRN1	96	68.392	Bos_taurus
ENSTNIG00000017615	xrn1	72	36.778	WBGene00012730	xrn-1	73	62.032	Caenorhabditis_elegans
ENSTNIG00000017615	xrn1	98	59.631	ENSCJAG00000001872	XRN1	96	68.471	Callithrix_jacchus
ENSTNIG00000017615	xrn1	96	60.615	ENSCAFG00000007783	XRN1	96	68.930	Canis_familiaris
ENSTNIG00000017615	xrn1	96	59.467	ENSCAFG00020009120	XRN1	97	72.977	Canis_lupus_dingo
ENSTNIG00000017615	xrn1	99	57.466	ENSCHIG00000019192	XRN1	99	57.248	Capra_hircus
ENSTNIG00000017615	xrn1	100	59.165	ENSTSYG00000002705	XRN1	96	68.501	Carlito_syrichta
ENSTNIG00000017615	xrn1	55	60.137	ENSCAPG00000004604	-	98	60.309	Cavia_aperea
ENSTNIG00000017615	xrn1	100	58.854	ENSCCAG00000034800	XRN1	97	76.645	Cebus_capucinus
ENSTNIG00000017615	xrn1	96	60.216	ENSCATG00000041794	XRN1	96	68.526	Cercocebus_atys
ENSTNIG00000017615	xrn1	100	57.610	ENSCLAG00000001451	XRN1	97	76.606	Chinchilla_lanigera
ENSTNIG00000017615	xrn1	96	60.000	ENSCSAG00000011265	XRN1	96	68.606	Chlorocebus_sabaeus
ENSTNIG00000017615	xrn1	53	93.506	ENSCHOG00000013961	-	52	93.506	Choloepus_hoffmanni
ENSTNIG00000017615	xrn1	71	50.200	ENSCSAVG00000008584	-	93	49.395	Ciona_savignyi
ENSTNIG00000017615	xrn1	96	60.301	ENSCANG00000037495	XRN1	97	76.645	Colobus_angolensis_palliatus
ENSTNIG00000017615	xrn1	100	57.466	ENSCGRG00001019411	Xrn1	97	76.112	Cricetulus_griseus_chok1gshd
ENSTNIG00000017615	xrn1	100	57.466	ENSCGRG00000012464	Xrn1	97	76.112	Cricetulus_griseus_crigri
ENSTNIG00000017615	xrn1	95	73.359	ENSCSEG00000021285	xrn1	92	98.039	Cynoglossus_semilaevis
ENSTNIG00000017615	xrn1	68	80.936	ENSCVAG00000013089	xrn1	99	80.936	Cyprinodon_variegatus
ENSTNIG00000017615	xrn1	100	65.861	ENSDARG00000091652	xrn1	98	81.053	Danio_rerio
ENSTNIG00000017615	xrn1	100	57.586	ENSDORG00000013833	Xrn1	100	57.829	Dipodomys_ordii
ENSTNIG00000017615	xrn1	72	40.427	FBgn0020261	pcm	72	40.308	Drosophila_melanogaster
ENSTNIG00000017615	xrn1	86	63.964	ENSETEG00000003978	XRN1	88	65.289	Echinops_telfairi
ENSTNIG00000017615	xrn1	89	69.498	ENSEASG00005002687	XRN1	97	76.771	Equus_asinus_asinus
ENSTNIG00000017615	xrn1	96	59.808	ENSECAG00000008301	XRN1	96	68.820	Equus_caballus
ENSTNIG00000017615	xrn1	88	79.930	ENSEEUG00000011323	XRN1	89	79.930	Erinaceus_europaeus
ENSTNIG00000017615	xrn1	100	66.552	ENSELUG00000000169	xrn1	100	66.323	Esox_lucius
ENSTNIG00000017615	xrn1	99	55.516	ENSFCAG00000027589	XRN1	99	78.728	Felis_catus
ENSTNIG00000017615	xrn1	100	57.581	ENSFALG00000007021	XRN1	100	57.277	Ficedula_albicollis
ENSTNIG00000017615	xrn1	97	58.548	ENSFDAG00000020494	XRN1	97	76.442	Fukomys_damarensis
ENSTNIG00000017615	xrn1	89	71.217	ENSGMOG00000006396	xrn1	88	71.217	Gadus_morhua
ENSTNIG00000017615	xrn1	100	57.364	ENSGALG00000002706	XRN1	100	56.812	Gallus_gallus
ENSTNIG00000017615	xrn1	100	71.673	ENSGACG00000014328	xrn1	100	71.820	Gasterosteus_aculeatus
ENSTNIG00000017615	xrn1	95	59.501	ENSGAGG00000017535	XRN1	99	58.976	Gopherus_agassizii
ENSTNIG00000017615	xrn1	100	58.783	ENSGGOG00000008047	XRN1	96	68.526	Gorilla_gorilla
ENSTNIG00000017615	xrn1	97	79.403	ENSHBUG00000005908	xrn1	99	78.275	Haplochromis_burtoni
ENSTNIG00000017615	xrn1	100	57.951	ENSHGLG00000014476	XRN1	97	76.606	Heterocephalus_glaber_female
ENSTNIG00000017615	xrn1	100	57.951	ENSHGLG00100015130	XRN1	97	76.606	Heterocephalus_glaber_male
ENSTNIG00000017615	xrn1	96	78.554	ENSHCOG00000014062	xrn1	99	78.457	Hippocampus_comes
ENSTNIG00000017615	xrn1	100	64.812	ENSIPUG00000015229	xrn1	100	64.199	Ictalurus_punctatus
ENSTNIG00000017615	xrn1	98	58.537	ENSSTOG00000013552	XRN1	97	76.442	Ictidomys_tridecemlineatus
ENSTNIG00000017615	xrn1	98	57.398	ENSJJAG00000010863	Xrn1	96	76.076	Jaculus_jaculus
ENSTNIG00000017615	xrn1	100	69.800	ENSKMAG00000021356	xrn1	95	84.567	Kryptolebias_marmoratus
ENSTNIG00000017615	xrn1	100	73.174	ENSLBEG00000018656	xrn1	96	98.039	Labrus_bergylta
ENSTNIG00000017615	xrn1	100	58.050	ENSLACG00000009020	XRN1	100	57.766	Latimeria_chalumnae
ENSTNIG00000017615	xrn1	100	62.957	ENSLOCG00000007944	xrn1	96	71.956	Lepisosteus_oculatus
ENSTNIG00000017615	xrn1	63	69.476	ENSLAFG00000015426	XRN1	99	69.145	Loxodonta_africana
ENSTNIG00000017615	xrn1	96	60.580	ENSMFAG00000032599	XRN1	96	68.526	Macaca_fascicularis
ENSTNIG00000017615	xrn1	96	60.580	ENSMMUG00000014038	XRN1	96	68.526	Macaca_mulatta
ENSTNIG00000017615	xrn1	96	60.520	ENSMNEG00000034217	XRN1	96	68.367	Macaca_nemestrina
ENSTNIG00000017615	xrn1	95	79.660	ENSMAMG00000013219	xrn1	97	83.030	Mastacembelus_armatus
ENSTNIG00000017615	xrn1	100	72.486	ENSMZEG00005015099	xrn1	99	71.945	Maylandia_zebra
ENSTNIG00000017615	xrn1	99	56.981	ENSMGAG00000006333	XRN1	100	56.487	Meleagris_gallopavo
ENSTNIG00000017615	xrn1	98	59.123	ENSMICG00000048948	XRN1	95	94.118	Microcebus_murinus
ENSTNIG00000017615	xrn1	58	74.127	ENSMOCG00000008665	Xrn1	97	76.112	Microtus_ochrogaster
ENSTNIG00000017615	xrn1	100	58.271	ENSMODG00000021236	XRN1	100	58.052	Monodelphis_domestica
ENSTNIG00000017615	xrn1	100	69.766	ENSMALG00000004098	xrn1	99	77.397	Monopterus_albus
ENSTNIG00000017615	xrn1	95	74.168	MGP_CAROLIEiJ_G0032535	Xrn1	100	87.805	Mus_caroli
ENSTNIG00000017615	xrn1	97	67.917	ENSMUSG00000032410	Xrn1	100	87.805	Mus_musculus
ENSTNIG00000017615	xrn1	100	57.793	MGP_PahariEiJ_G0015404	Xrn1	100	87.805	Mus_pahari
ENSTNIG00000017615	xrn1	97	67.837	MGP_SPRETEiJ_G0033678	Xrn1	100	87.805	Mus_spretus
ENSTNIG00000017615	xrn1	96	60.239	ENSMPUG00000012040	XRN1	96	68.095	Mustela_putorius_furo
ENSTNIG00000017615	xrn1	100	57.425	ENSMLUG00000016885	XRN1	100	56.989	Myotis_lucifugus
ENSTNIG00000017615	xrn1	58	69.731	ENSNGAG00000023964	Xrn1	98	72.772	Nannospalax_galili
ENSTNIG00000017615	xrn1	96	60.545	ENSNLEG00000004726	XRN1	96	68.606	Nomascus_leucogenys
ENSTNIG00000017615	xrn1	61	94.845	ENSMEUG00000014473	-	59	95.098	Notamacropus_eugenii
ENSTNIG00000017615	xrn1	73	71.723	ENSOPRG00000007337	-	71	72.659	Ochotona_princeps
ENSTNIG00000017615	xrn1	100	71.551	ENSONIG00000016673	xrn1	99	74.306	Oreochromis_niloticus
ENSTNIG00000017615	xrn1	92	55.025	ENSOANG00000006735	XRN1	96	64.763	Ornithorhynchus_anatinus
ENSTNIG00000017615	xrn1	100	57.583	ENSOCUG00000001861	XRN1	100	57.472	Oryctolagus_cuniculus
ENSTNIG00000017615	xrn1	100	70.704	ENSORLG00000013005	xrn1	100	69.060	Oryzias_latipes
ENSTNIG00000017615	xrn1	100	70.704	ENSORLG00020005559	xrn1	100	70.517	Oryzias_latipes_hni
ENSTNIG00000017615	xrn1	100	70.276	ENSORLG00015022523	xrn1	98	78.910	Oryzias_latipes_hsok
ENSTNIG00000017615	xrn1	93	81.581	ENSOMEG00000015397	xrn1	99	82.011	Oryzias_melastigma
ENSTNIG00000017615	xrn1	100	56.838	ENSOGAG00000000170	XRN1	100	56.509	Otolemur_garnettii
ENSTNIG00000017615	xrn1	99	58.338	ENSOARG00000006343	XRN1	96	68.312	Ovis_aries
ENSTNIG00000017615	xrn1	100	59.214	ENSPPAG00000010180	XRN1	96	68.526	Pan_paniscus
ENSTNIG00000017615	xrn1	99	59.611	ENSPPRG00000007125	XRN1	100	59.109	Panthera_pardus
ENSTNIG00000017615	xrn1	99	59.541	ENSPTIG00000021081	XRN1	100	59.109	Panthera_tigris_altaica
ENSTNIG00000017615	xrn1	100	58.874	ENSPTRG00000015482	XRN1	96	68.526	Pan_troglodytes
ENSTNIG00000017615	xrn1	96	60.216	ENSPANG00000010638	XRN1	96	68.526	Papio_anubis
ENSTNIG00000017615	xrn1	100	58.524	ENSPSIG00000018050	XRN1	100	58.041	Pelodiscus_sinensis
ENSTNIG00000017615	xrn1	57	81.657	ENSPMGG00000002648	xrn1	96	82.702	Periophthalmus_magnuspinnatus
ENSTNIG00000017615	xrn1	58	74.127	ENSPEMG00000020610	Xrn1	97	76.112	Peromyscus_maniculatus_bairdii
ENSTNIG00000017615	xrn1	66	50.125	ENSPMAG00000002975	xrn1	90	77.077	Petromyzon_marinus
ENSTNIG00000017615	xrn1	100	66.464	ENSPCIG00000028735	XRN1	95	78.694	Phascolarctos_cinereus
ENSTNIG00000017615	xrn1	91	73.765	ENSPFOG00000013932	xrn1	99	74.150	Poecilia_formosa
ENSTNIG00000017615	xrn1	91	73.573	ENSPLAG00000021653	xrn1	99	74.229	Poecilia_latipinna
ENSTNIG00000017615	xrn1	89	73.722	ENSPMEG00000003076	xrn1	95	74.227	Poecilia_mexicana
ENSTNIG00000017615	xrn1	100	70.917	ENSPREG00000021147	xrn1	99	78.223	Poecilia_reticulata
ENSTNIG00000017615	xrn1	100	58.699	ENSPPYG00000014172	XRN1	96	68.606	Pongo_abelii
ENSTNIG00000017615	xrn1	84	78.611	ENSPCAG00000005638	XRN1	92	78.611	Procavia_capensis
ENSTNIG00000017615	xrn1	96	59.976	ENSPCOG00000013089	XRN1	96	76.151	Propithecus_coquereli
ENSTNIG00000017615	xrn1	88	67.181	ENSPVAG00000016265	XRN1	83	84.150	Pteropus_vampyrus
ENSTNIG00000017615	xrn1	97	80.392	ENSPNYG00000010570	xrn1	99	80.266	Pundamilia_nyererei
ENSTNIG00000017615	xrn1	100	63.218	ENSPNAG00000023531	xrn1	100	63.173	Pygocentrus_nattereri
ENSTNIG00000017615	xrn1	100	57.760	ENSRNOG00000042951	Xrn1	100	57.889	Rattus_norvegicus
ENSTNIG00000017615	xrn1	96	60.204	ENSRBIG00000041227	XRN1	96	68.526	Rhinopithecus_bieti
ENSTNIG00000017615	xrn1	74	31.504	YGL173C	XRN1	74	52.846	Saccharomyces_cerevisiae
ENSTNIG00000017615	xrn1	96	60.584	ENSSBOG00000029561	XRN1	96	68.551	Saimiri_boliviensis_boliviensis
ENSTNIG00000017615	xrn1	99	57.176	ENSSHAG00000016207	XRN1	100	57.833	Sarcophilus_harrisii
ENSTNIG00000017615	xrn1	100	63.768	ENSSFOG00015024211	xrn1	100	63.689	Scleropages_formosus
ENSTNIG00000017615	xrn1	100	70.652	ENSSMAG00000016534	xrn1	99	78.760	Scophthalmus_maximus
ENSTNIG00000017615	xrn1	93	83.034	ENSSDUG00000010306	xrn1	98	83.293	Seriola_dumerili
ENSTNIG00000017615	xrn1	92	82.399	ENSSLDG00000021543	xrn1	99	82.650	Seriola_lalandi_dorsalis
ENSTNIG00000017615	xrn1	62	64.184	ENSSARG00000007741	-	75	64.220	Sorex_araneus
ENSTNIG00000017615	xrn1	94	69.031	ENSTGUG00000008498	XRN1	96	68.878	Taeniopygia_guttata
ENSTNIG00000017615	xrn1	95	86.399	ENSTRUG00000004895	xrn1	96	91.202	Takifugu_rubripes
ENSTNIG00000017615	xrn1	74	83.646	ENSTBEG00000003256	XRN1	75	83.598	Tupaia_belangeri
ENSTNIG00000017615	xrn1	100	55.435	ENSTTRG00000012914	XRN1	100	55.530	Tursiops_truncatus
ENSTNIG00000017615	xrn1	90	67.064	ENSUAMG00000001608	XRN1	97	72.431	Ursus_americanus
ENSTNIG00000017615	xrn1	96	60.276	ENSUMAG00000013625	XRN1	96	68.358	Ursus_maritimus
ENSTNIG00000017615	xrn1	100	56.300	ENSVPAG00000004690	XRN1	96	65.605	Vicugna_pacos
ENSTNIG00000017615	xrn1	96	60.652	ENSVVUG00000024461	XRN1	99	77.897	Vulpes_vulpes
ENSTNIG00000017615	xrn1	100	59.182	ENSXETG00000000619	xrn1	98	84.615	Xenopus_tropicalis
ENSTNIG00000017615	xrn1	92	80.753	ENSXCOG00000007917	xrn1	95	80.279	Xiphophorus_couchianus
ENSTNIG00000017615	xrn1	93	80.788	ENSXMAG00000018320	xrn1	98	80.870	Xiphophorus_maculatus