EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000017717 (Gene tree)
Gene ID: -
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 6511 bases
Position: chr18:7666088-7672598
Accession: ZDB-GENE-021125-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000020867	ResIII	PF04851.15	2.5e-11	1	1
ENSTNIP00000020867	DEAD	PF00270.29	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000021100	-	3138	-	ENSTNIP00000020867	1045 (aa)	-	H3DK21

Gene Model

Click here to download ENSTNIG00000017717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000017717's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000017717	smarca5	52	41.316	ENSTNIG00000004902	chd1l	65	41.316

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000017717	smarca5	94	81.616	ENSG00000102038	SMARCA1	92	82.582	Homo_sapiens
ENSTNIG00000017717	smarca5	97	95.870	ENSAPOG00000016035	smarca5	98	98.357	Acanthochromis_polyacanthus
ENSTNIG00000017717	smarca5	94	80.976	ENSAMEG00000015218	SMARCA1	92	81.818	Ailuropoda_melanoleuca
ENSTNIG00000017717	smarca5	86	97.780	ENSACIG00000016982	smarca5	100	97.780	Amphilophus_citrinellus
ENSTNIG00000017717	smarca5	97	95.870	ENSAOCG00000015578	smarca5	98	95.870	Amphiprion_ocellaris
ENSTNIG00000017717	smarca5	97	95.870	ENSAPEG00000011117	smarca5	99	98.345	Amphiprion_percula
ENSTNIG00000017717	smarca5	97	95.644	ENSATEG00000012894	smarca5	98	95.276	Anabas_testudineus
ENSTNIG00000017717	smarca5	94	82.892	ENSAPLG00000013149	SMARCA1	99	83.197	Anas_platyrhynchos
ENSTNIG00000017717	smarca5	94	83.181	ENSACAG00000011376	SMARCA1	93	83.811	Anolis_carolinensis
ENSTNIG00000017717	smarca5	94	77.172	ENSANAG00000023098	SMARCA1	92	78.074	Aotus_nancymaae
ENSTNIG00000017717	smarca5	97	95.575	ENSACLG00000025356	smarca5	98	95.280	Astatotilapia_calliptera
ENSTNIG00000017717	smarca5	96	91.873	ENSAMXG00000005709	smarca5	97	91.675	Astyanax_mexicanus
ENSTNIG00000017717	smarca5	87	84.666	ENSAMXG00000011227	smarca1	99	85.887	Astyanax_mexicanus
ENSTNIG00000017717	smarca5	94	82.161	ENSBTAG00000002292	SMARCA1	90	82.613	Bos_taurus
ENSTNIG00000017717	smarca5	95	62.710	WBGene00002169	isw-1	95	63.440	Caenorhabditis_elegans
ENSTNIG00000017717	smarca5	95	81.736	ENSCJAG00000002868	SMARCA1	92	82.582	Callithrix_jacchus
ENSTNIG00000017717	smarca5	94	72.095	ENSCAFG00000018673	SMARCA1	99	74.941	Canis_familiaris
ENSTNIG00000017717	smarca5	94	81.919	ENSCAFG00020001751	SMARCA1	92	82.787	Canis_lupus_dingo
ENSTNIG00000017717	smarca5	94	81.864	ENSCHIG00000009837	SMARCA1	92	82.480	Capra_hircus
ENSTNIG00000017717	smarca5	94	81.818	ENSTSYG00000004240	SMARCA1	94	83.422	Carlito_syrichta
ENSTNIG00000017717	smarca5	94	80.924	ENSCPOG00000013601	SMARCA1	93	81.772	Cavia_porcellus
ENSTNIG00000017717	smarca5	94	78.889	ENSCCAG00000030817	SMARCA1	92	79.816	Cebus_capucinus
ENSTNIG00000017717	smarca5	94	80.639	ENSCATG00000015921	SMARCA1	90	83.671	Cercocebus_atys
ENSTNIG00000017717	smarca5	94	81.212	ENSCLAG00000002171	SMARCA1	92	82.070	Chinchilla_lanigera
ENSTNIG00000017717	smarca5	94	81.616	ENSCSAG00000008460	SMARCA1	92	82.582	Chlorocebus_sabaeus
ENSTNIG00000017717	smarca5	94	82.675	ENSCPBG00000001146	SMARCA1	92	83.299	Chrysemys_picta_bellii
ENSTNIG00000017717	smarca5	95	73.831	ENSCING00000004110	swi/snf	99	73.831	Ciona_intestinalis
ENSTNIG00000017717	smarca5	95	73.207	ENSCSAVG00000004620	-	99	76.063	Ciona_savignyi
ENSTNIG00000017717	smarca5	94	81.717	ENSCANG00000007183	SMARCA1	92	82.684	Colobus_angolensis_palliatus
ENSTNIG00000017717	smarca5	94	81.111	ENSCGRG00001010776	Smarca1	92	81.967	Cricetulus_griseus_chok1gshd
ENSTNIG00000017717	smarca5	94	80.648	ENSCGRG00000015301	Smarca1	94	82.378	Cricetulus_griseus_crigri
ENSTNIG00000017717	smarca5	97	94.877	ENSCSEG00000000328	smarca5	98	94.581	Cynoglossus_semilaevis
ENSTNIG00000017717	smarca5	97	94.851	ENSCVAG00000008668	smarca5	99	96.694	Cyprinodon_variegatus
ENSTNIG00000017717	smarca5	94	81.175	ENSDARG00000012776	smarca1	96	81.508	Danio_rerio
ENSTNIG00000017717	smarca5	96	91.477	ENSDARG00000052348	smarca5	97	91.026	Danio_rerio
ENSTNIG00000017717	smarca5	92	82.402	ENSDNOG00000004315	SMARCA1	90	83.351	Dasypus_novemcinctus
ENSTNIG00000017717	smarca5	92	82.712	ENSDORG00000009270	Smarca1	90	83.671	Dipodomys_ordii
ENSTNIG00000017717	smarca5	95	74.323	FBgn0011604	Iswi	100	72.500	Drosophila_melanogaster
ENSTNIG00000017717	smarca5	76	79.464	ENSETEG00000017426	SMARCA1	82	79.464	Echinops_telfairi
ENSTNIG00000017717	smarca5	96	79.444	ENSEBUG00000001239	smarca5	96	81.565	Eptatretus_burgeri
ENSTNIG00000017717	smarca5	94	78.362	ENSEASG00005008218	SMARCA1	99	79.247	Equus_asinus_asinus
ENSTNIG00000017717	smarca5	94	81.919	ENSECAG00000012106	SMARCA1	92	82.787	Equus_caballus
ENSTNIG00000017717	smarca5	76	80.132	ENSEEUG00000014927	SMARCA1	80	80.132	Erinaceus_europaeus
ENSTNIG00000017717	smarca5	93	82.854	ENSELUG00000010515	smarca1	95	83.608	Esox_lucius
ENSTNIG00000017717	smarca5	94	81.818	ENSFCAG00000018496	SMARCA1	92	82.684	Felis_catus
ENSTNIG00000017717	smarca5	87	84.136	ENSFALG00000000209	SMARCA1	98	84.136	Ficedula_albicollis
ENSTNIG00000017717	smarca5	92	81.288	ENSFDAG00000009818	SMARCA1	93	82.192	Fukomys_damarensis
ENSTNIG00000017717	smarca5	97	95.054	ENSFHEG00000007687	smarca5	97	95.054	Fundulus_heteroclitus
ENSTNIG00000017717	smarca5	95	81.038	ENSGALG00000008431	SMARCA1	94	83.979	Gallus_gallus
ENSTNIG00000017717	smarca5	97	95.248	ENSGAFG00000017731	smarca5	98	94.882	Gambusia_affinis
ENSTNIG00000017717	smarca5	93	83.230	ENSGAGG00000023575	SMARCA1	99	83.230	Gopherus_agassizii
ENSTNIG00000017717	smarca5	73	77.110	ENSGGOG00000012841	-	91	78.498	Gorilla_gorilla
ENSTNIG00000017717	smarca5	94	80.909	ENSHGLG00000003080	SMARCA1	92	81.762	Heterocephalus_glaber_female
ENSTNIG00000017717	smarca5	94	80.422	ENSHGLG00100001102	SMARCA1	98	81.263	Heterocephalus_glaber_male
ENSTNIG00000017717	smarca5	97	95.545	ENSHCOG00000005458	smarca5	98	95.177	Hippocampus_comes
ENSTNIG00000017717	smarca5	97	90.828	ENSIPUG00000005229	SMARCA5	100	90.828	Ictalurus_punctatus
ENSTNIG00000017717	smarca5	95	80.834	ENSIPUG00000016905	Smarca1	99	82.752	Ictalurus_punctatus
ENSTNIG00000017717	smarca5	95	81.635	ENSSTOG00000014524	SMARCA1	97	80.299	Ictidomys_tridecemlineatus
ENSTNIG00000017717	smarca5	94	80.603	ENSJJAG00000002593	Smarca1	92	81.448	Jaculus_jaculus
ENSTNIG00000017717	smarca5	97	95.050	ENSKMAG00000003777	smarca5	98	94.685	Kryptolebias_marmoratus
ENSTNIG00000017717	smarca5	97	94.653	ENSLBEG00000018112	smarca5	98	93.996	Labrus_bergylta
ENSTNIG00000017717	smarca5	91	94.538	ENSLBEG00000013295	SMARCA1	100	97.468	Labrus_bergylta
ENSTNIG00000017717	smarca5	94	83.384	ENSLACG00000016697	SMARCA1	95	84.124	Latimeria_chalumnae
ENSTNIG00000017717	smarca5	93	84.513	ENSLOCG00000014591	smarca1	95	84.513	Lepisosteus_oculatus
ENSTNIG00000017717	smarca5	94	80.622	ENSLAFG00000000896	SMARCA1	98	81.466	Loxodonta_africana
ENSTNIG00000017717	smarca5	94	81.616	ENSMFAG00000002117	SMARCA1	93	83.493	Macaca_fascicularis
ENSTNIG00000017717	smarca5	94	80.639	ENSMMUG00000008818	SMARCA1	97	83.547	Macaca_mulatta
ENSTNIG00000017717	smarca5	94	80.639	ENSMNEG00000041768	SMARCA1	93	83.493	Macaca_nemestrina
ENSTNIG00000017717	smarca5	94	81.616	ENSMLEG00000043198	SMARCA1	92	82.582	Mandrillus_leucophaeus
ENSTNIG00000017717	smarca5	97	95.365	ENSMAMG00000014294	smarca5	98	94.706	Mastacembelus_armatus
ENSTNIG00000017717	smarca5	97	95.575	ENSMZEG00005009369	smarca5	98	95.280	Maylandia_zebra
ENSTNIG00000017717	smarca5	94	81.891	ENSMGAG00000007042	SMARCA1	97	82.186	Meleagris_gallopavo
ENSTNIG00000017717	smarca5	92	81.771	ENSMAUG00000008133	Smarca1	90	82.696	Mesocricetus_auratus
ENSTNIG00000017717	smarca5	94	81.818	ENSMICG00000015768	SMARCA1	92	82.684	Microcebus_murinus
ENSTNIG00000017717	smarca5	94	80.704	ENSMOCG00000009464	Smarca1	92	81.549	Microtus_ochrogaster
ENSTNIG00000017717	smarca5	95	94.361	ENSMMOG00000005547	smarca5	100	94.361	Mola_mola
ENSTNIG00000017717	smarca5	96	80.607	ENSMODG00000013187	-	94	83.385	Monodelphis_domestica
ENSTNIG00000017717	smarca5	97	94.390	ENSMALG00000002081	smarca5	99	93.781	Monopterus_albus
ENSTNIG00000017717	smarca5	94	81.005	MGP_CAROLIEiJ_G0033034	Smarca1	92	81.957	Mus_caroli
ENSTNIG00000017717	smarca5	94	81.106	ENSMUSG00000031099	Smarca1	92	81.957	Mus_musculus
ENSTNIG00000017717	smarca5	94	81.174	MGP_PahariEiJ_G0031579	Smarca1	92	82.136	Mus_pahari
ENSTNIG00000017717	smarca5	94	81.106	MGP_SPRETEiJ_G0034192	Smarca1	92	81.957	Mus_spretus
ENSTNIG00000017717	smarca5	94	80.938	ENSMPUG00000017423	SMARCA1	87	81.781	Mustela_putorius_furo
ENSTNIG00000017717	smarca5	94	79.781	ENSMLUG00000029614	SMARCA1	92	80.303	Myotis_lucifugus
ENSTNIG00000017717	smarca5	92	82.080	ENSNGAG00000006492	Smarca1	90	83.015	Nannospalax_galili
ENSTNIG00000017717	smarca5	95	96.181	ENSNBRG00000004463	smarca5	100	96.181	Neolamprologus_brichardi
ENSTNIG00000017717	smarca5	94	79.940	ENSNLEG00000015179	SMARCA1	94	82.766	Nomascus_leucogenys
ENSTNIG00000017717	smarca5	88	75.080	ENSMEUG00000008819	SMARCA1	97	75.350	Notamacropus_eugenii
ENSTNIG00000017717	smarca5	94	79.187	ENSODEG00000012163	SMARCA1	90	82.192	Octodon_degus
ENSTNIG00000017717	smarca5	97	95.674	ENSONIG00000009993	smarca5	98	95.379	Oreochromis_niloticus
ENSTNIG00000017717	smarca5	93	83.745	ENSOANG00000002862	SMARCA1	99	83.745	Ornithorhynchus_anatinus
ENSTNIG00000017717	smarca5	94	82.168	ENSOCUG00000001047	SMARCA1	92	82.787	Oryctolagus_cuniculus
ENSTNIG00000017717	smarca5	97	95.248	ENSORLG00000021998	smarca5	98	94.975	Oryzias_latipes
ENSTNIG00000017717	smarca5	97	95.248	ENSORLG00020017679	smarca5	98	94.975	Oryzias_latipes_hni
ENSTNIG00000017717	smarca5	97	95.248	ENSORLG00015017210	smarca5	98	94.975	Oryzias_latipes_hsok
ENSTNIG00000017717	smarca5	97	95.149	ENSOMEG00000000086	smarca5	98	94.877	Oryzias_melastigma
ENSTNIG00000017717	smarca5	92	82.136	ENSOGAG00000004399	SMARCA1	90	82.824	Otolemur_garnettii
ENSTNIG00000017717	smarca5	93	82.480	ENSOARG00000014638	SMARCA1	99	82.480	Ovis_aries
ENSTNIG00000017717	smarca5	94	81.616	ENSPPAG00000034647	SMARCA1	92	82.582	Pan_paniscus
ENSTNIG00000017717	smarca5	94	81.919	ENSPPRG00000008929	SMARCA1	92	82.787	Panthera_pardus
ENSTNIG00000017717	smarca5	94	80.139	ENSPTIG00000000915	SMARCA1	96	80.967	Panthera_tigris_altaica
ENSTNIG00000017717	smarca5	94	81.616	ENSPTRG00000049876	SMARCA1	90	83.671	Pan_troglodytes
ENSTNIG00000017717	smarca5	94	81.616	ENSPANG00000003871	SMARCA1	92	82.582	Papio_anubis
ENSTNIG00000017717	smarca5	93	80.879	ENSPKIG00000013411	smarca1	96	82.334	Paramormyrops_kingsleyae
ENSTNIG00000017717	smarca5	93	83.230	ENSPSIG00000010101	SMARCA1	99	83.230	Pelodiscus_sinensis
ENSTNIG00000017717	smarca5	92	81.874	ENSPEMG00000017503	Smarca1	90	82.803	Peromyscus_maniculatus_bairdii
ENSTNIG00000017717	smarca5	94	83.503	ENSPCIG00000015460	SMARCA1	96	83.811	Phascolarctos_cinereus
ENSTNIG00000017717	smarca5	97	95.050	ENSPFOG00000007649	smarca5	98	94.685	Poecilia_formosa
ENSTNIG00000017717	smarca5	97	95.050	ENSPLAG00000003363	smarca5	98	94.685	Poecilia_latipinna
ENSTNIG00000017717	smarca5	97	95.149	ENSPMEG00000019849	smarca5	98	94.783	Poecilia_mexicana
ENSTNIG00000017717	smarca5	97	95.149	ENSPREG00000023250	smarca5	98	94.783	Poecilia_reticulata
ENSTNIG00000017717	smarca5	94	78.788	ENSPPYG00000020703	SMARCA1	92	79.713	Pongo_abelii
ENSTNIG00000017717	smarca5	74	78.125	ENSPCOG00000020722	SMARCA1	97	76.218	Propithecus_coquereli
ENSTNIG00000017717	smarca5	87	83.613	ENSPVAG00000003805	SMARCA1	84	83.706	Pteropus_vampyrus
ENSTNIG00000017717	smarca5	58	96.429	ENSPNYG00000012299	smarca5	92	96.789	Pundamilia_nyererei
ENSTNIG00000017717	smarca5	94	81.414	ENSRNOG00000003762	Smarca1	92	82.275	Rattus_norvegicus
ENSTNIG00000017717	smarca5	94	81.717	ENSRROG00000034167	SMARCA1	92	82.684	Rhinopithecus_roxellana
ENSTNIG00000017717	smarca5	93	82.480	ENSSBOG00000020641	SMARCA1	99	82.480	Saimiri_boliviensis_boliviensis
ENSTNIG00000017717	smarca5	93	78.909	ENSSHAG00000013518	SMARCA1	99	79.034	Sarcophilus_harrisii
ENSTNIG00000017717	smarca5	94	91.429	ENSSFOG00015016794	smarca5	100	91.649	Scleropages_formosus
ENSTNIG00000017717	smarca5	94	82.724	ENSSFOG00015009043	smarca1	95	83.368	Scleropages_formosus
ENSTNIG00000017717	smarca5	97	94.653	ENSSMAG00000004801	smarca5	97	94.362	Scophthalmus_maximus
ENSTNIG00000017717	smarca5	97	95.248	ENSSDUG00000020690	smarca5	98	94.882	Seriola_dumerili
ENSTNIG00000017717	smarca5	97	95.248	ENSSLDG00000025190	smarca5	98	94.882	Seriola_lalandi_dorsalis
ENSTNIG00000017717	smarca5	78	84.698	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSTNIG00000017717	smarca5	92	83.230	ENSSPUG00000000590	SMARCA1	97	81.057	Sphenodon_punctatus
ENSTNIG00000017717	smarca5	97	95.846	ENSSPAG00000002894	smarca5	97	98.138	Stegastes_partitus
ENSTNIG00000017717	smarca5	93	82.577	ENSSSCG00000012649	SMARCA1	95	82.190	Sus_scrofa
ENSTNIG00000017717	smarca5	94	82.790	ENSTGUG00000003899	-	99	83.094	Taeniopygia_guttata
ENSTNIG00000017717	smarca5	97	96.752	ENSTRUG00000014094	smarca5	98	96.752	Takifugu_rubripes
ENSTNIG00000017717	smarca5	85	82.927	ENSTBEG00000014973	SMARCA1	89	82.976	Tupaia_belangeri
ENSTNIG00000017717	smarca5	92	78.447	ENSTTRG00000006168	SMARCA1	96	79.347	Tursiops_truncatus
ENSTNIG00000017717	smarca5	94	81.855	ENSUAMG00000020201	SMARCA1	92	82.720	Ursus_americanus
ENSTNIG00000017717	smarca5	95	77.522	ENSUMAG00000004073	SMARCA1	95	82.878	Ursus_maritimus
ENSTNIG00000017717	smarca5	73	86.513	ENSVPAG00000010492	-	77	86.851	Vicugna_pacos
ENSTNIG00000017717	smarca5	94	81.919	ENSVVUG00000008878	SMARCA1	98	83.885	Vulpes_vulpes
ENSTNIG00000017717	smarca5	94	82.706	ENSXETG00000001526	smarca1	97	83.333	Xenopus_tropicalis
ENSTNIG00000017717	smarca5	96	95.040	ENSXCOG00000011170	smarca5	100	95.040	Xiphophorus_couchianus
ENSTNIG00000017717	smarca5	97	95.050	ENSXMAG00000009678	smarca5	98	95.087	Xiphophorus_maculatus