EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000017903 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 3117 bases
Position: chr9:6330537-6333653
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000021063	PABP	PF00658.18	2e-28	1	1
ENSTNIP00000021063	RRM_5	PF13893.6	3e-07	1	1
ENSTNIP00000021063	RRM_1	PF00076.22	5.8e-83	1	4
ENSTNIP00000021063	RRM_1	PF00076.22	5.8e-83	2	4
ENSTNIP00000021063	RRM_1	PF00076.22	5.8e-83	3	4
ENSTNIP00000021063	RRM_1	PF00076.22	5.8e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000021296	-	1875	-	ENSTNIP00000021063	625 (aa)	-	H3DKL7

Gene Model

Click here to download ENSTNIG00000017903's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000017903's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000017903	pabpc1l	57	31.646	ENSTNIG00000013091	TIAL1	78	31.646
ENSTNIG00000017903	pabpc1l	100	66.770	ENSTNIG00000009153	pabpc1b	99	66.770
ENSTNIG00000017903	pabpc1l	98	64.320	ENSTNIG00000016902	pabpc4	97	64.320
ENSTNIG00000017903	pabpc1l	58	38.095	ENSTNIG00000007398	-	66	38.750
ENSTNIG00000017903	pabpc1l	59	34.091	ENSTNIG00000011312	elavl2	88	34.091
ENSTNIG00000017903	pabpc1l	59	30.000	ENSTNIG00000015485	elavl4	89	30.000
ENSTNIG00000017903	pabpc1l	99	65.084	ENSTNIG00000013307	pabpc1a	99	65.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000017903	pabpc1l	98	65.974	ENSG00000101104	PABPC1L	98	73.538	Homo_sapiens
ENSTNIG00000017903	pabpc1l	98	79.417	ENSAPOG00000010842	pabpc1l	99	79.417	Acanthochromis_polyacanthus
ENSTNIG00000017903	pabpc1l	98	61.728	ENSAMEG00000004099	PABPC1L	99	61.574	Ailuropoda_melanoleuca
ENSTNIG00000017903	pabpc1l	98	83.949	ENSACIG00000021004	-	99	87.745	Amphilophus_citrinellus
ENSTNIG00000017903	pabpc1l	98	80.515	ENSAOCG00000006167	-	99	80.515	Amphiprion_ocellaris
ENSTNIG00000017903	pabpc1l	98	81.647	ENSAPEG00000010558	-	99	83.105	Amphiprion_percula
ENSTNIG00000017903	pabpc1l	98	83.814	ENSATEG00000007428	pabpc1l	99	84.615	Anabas_testudineus
ENSTNIG00000017903	pabpc1l	97	68.285	ENSAPLG00000008415	PABPC1L	99	68.269	Anas_platyrhynchos
ENSTNIG00000017903	pabpc1l	99	70.978	ENSACAG00000011841	PABPC1L	99	70.978	Anolis_carolinensis
ENSTNIG00000017903	pabpc1l	98	65.335	ENSANAG00000026826	PABPC1L	99	65.335	Aotus_nancymaae
ENSTNIG00000017903	pabpc1l	98	85.048	ENSACLG00000024791	pabpc1l	99	85.048	Astatotilapia_calliptera
ENSTNIG00000017903	pabpc1l	98	76.603	ENSAMXG00000013552	pabpc1l	99	76.603	Astyanax_mexicanus
ENSTNIG00000017903	pabpc1l	62	63.396	ENSBTAG00000016849	PABPC1L	80	63.396	Bos_taurus
ENSTNIG00000017903	pabpc1l	61	81.065	ENSBTAG00000055300	-	100	81.065	Bos_taurus
ENSTNIG00000017903	pabpc1l	98	65.655	ENSCJAG00000017628	PABPC1L	99	65.655	Callithrix_jacchus
ENSTNIG00000017903	pabpc1l	58	72.989	ENSCJAG00000038506	-	100	72.989	Callithrix_jacchus
ENSTNIG00000017903	pabpc1l	98	62.058	ENSCAFG00000009573	PABPC1L	99	62.058	Canis_familiaris
ENSTNIG00000017903	pabpc1l	98	65.440	ENSCAFG00020013828	PABPC1L	99	65.440	Canis_lupus_dingo
ENSTNIG00000017903	pabpc1l	97	65.246	ENSCHIG00000025759	PABPC1L	91	65.246	Capra_hircus
ENSTNIG00000017903	pabpc1l	98	65.016	ENSTSYG00000006645	PABPC1L	99	65.016	Carlito_syrichta
ENSTNIG00000017903	pabpc1l	86	61.273	ENSCAPG00000014519	PABPC1L	97	61.273	Cavia_aperea
ENSTNIG00000017903	pabpc1l	98	62.658	ENSCPOG00000013633	PABPC1L	99	62.658	Cavia_porcellus
ENSTNIG00000017903	pabpc1l	99	64.557	ENSCCAG00000023338	PABPC1L	100	65.190	Cebus_capucinus
ENSTNIG00000017903	pabpc1l	98	65.506	ENSCATG00000034065	PABPC1L	99	65.506	Cercocebus_atys
ENSTNIG00000017903	pabpc1l	98	60.726	ENSCLAG00000005298	PABPC1L	99	62.162	Chinchilla_lanigera
ENSTNIG00000017903	pabpc1l	98	65.348	ENSCSAG00000014242	PABPC1L	99	65.348	Chlorocebus_sabaeus
ENSTNIG00000017903	pabpc1l	52	75.000	ENSCPBG00000007810	-	81	75.000	Chrysemys_picta_bellii
ENSTNIG00000017903	pabpc1l	70	76.471	ENSCPBG00000017755	-	99	76.471	Chrysemys_picta_bellii
ENSTNIG00000017903	pabpc1l	96	49.112	ENSCING00000002796	-	97	49.901	Ciona_intestinalis
ENSTNIG00000017903	pabpc1l	98	62.613	ENSCSAVG00000004246	-	86	69.930	Ciona_savignyi
ENSTNIG00000017903	pabpc1l	98	55.660	ENSCSAVG00000003102	-	100	76.000	Ciona_savignyi
ENSTNIG00000017903	pabpc1l	98	62.992	ENSCANG00000037530	PABPC1L	99	62.992	Colobus_angolensis_palliatus
ENSTNIG00000017903	pabpc1l	98	59.084	ENSCGRG00001021938	Pabpc1l	98	59.084	Cricetulus_griseus_chok1gshd
ENSTNIG00000017903	pabpc1l	98	59.084	ENSCGRG00000007946	Pabpc1l	98	59.084	Cricetulus_griseus_crigri
ENSTNIG00000017903	pabpc1l	98	73.864	ENSCSEG00000021295	pabpc1l	99	73.864	Cynoglossus_semilaevis
ENSTNIG00000017903	pabpc1l	98	82.183	ENSCVAG00000015943	-	99	82.183	Cyprinodon_variegatus
ENSTNIG00000017903	pabpc1l	98	76.442	ENSDARG00000002597	pabpc1l	100	75.752	Danio_rerio
ENSTNIG00000017903	pabpc1l	98	65.600	ENSDNOG00000048450	PABPC1L	99	65.600	Dasypus_novemcinctus
ENSTNIG00000017903	pabpc1l	98	63.535	ENSDORG00000001067	Pabpc1l	99	63.535	Dipodomys_ordii
ENSTNIG00000017903	pabpc1l	94	72.470	ENSETEG00000009969	PABPC1L	72	72.470	Echinops_telfairi
ENSTNIG00000017903	pabpc1l	50	74.051	ENSEASG00005023407	-	64	74.051	Equus_asinus_asinus
ENSTNIG00000017903	pabpc1l	61	78.698	ENSEASG00005023408	-	100	78.698	Equus_asinus_asinus
ENSTNIG00000017903	pabpc1l	64	66.964	ENSECAG00000040139	-	81	66.964	Equus_caballus
ENSTNIG00000017903	pabpc1l	99	63.593	ENSEEUG00000005978	PABPC1L	100	63.593	Erinaceus_europaeus
ENSTNIG00000017903	pabpc1l	98	79.520	ENSELUG00000001811	pabpc1l	99	79.520	Esox_lucius
ENSTNIG00000017903	pabpc1l	98	66.454	ENSFCAG00000011692	PABPC1L	99	66.454	Felis_catus
ENSTNIG00000017903	pabpc1l	84	69.613	ENSFALG00000005372	PABPC1L	91	69.613	Ficedula_albicollis
ENSTNIG00000017903	pabpc1l	98	61.538	ENSFDAG00000008291	PABPC1L	99	62.019	Fukomys_damarensis
ENSTNIG00000017903	pabpc1l	98	83.762	ENSFHEG00000003398	pabpc1l	99	83.762	Fundulus_heteroclitus
ENSTNIG00000017903	pabpc1l	98	79.100	ENSGMOG00000004437	pabpc1l	98	79.100	Gadus_morhua
ENSTNIG00000017903	pabpc1l	95	73.068	ENSGALG00000004123	PABPC1L	99	73.973	Gallus_gallus
ENSTNIG00000017903	pabpc1l	98	79.511	ENSGAFG00000021057	pabpc1l	99	79.511	Gambusia_affinis
ENSTNIG00000017903	pabpc1l	98	84.270	ENSGACG00000002792	pabpc1l	99	84.270	Gasterosteus_aculeatus
ENSTNIG00000017903	pabpc1l	100	69.829	ENSGAGG00000000589	PABPC1L	100	69.829	Gopherus_agassizii
ENSTNIG00000017903	pabpc1l	98	65.974	ENSGGOG00000004584	PABPC1L	99	65.974	Gorilla_gorilla
ENSTNIG00000017903	pabpc1l	98	85.048	ENSHBUG00000006134	pabpc1l	99	85.048	Haplochromis_burtoni
ENSTNIG00000017903	pabpc1l	99	62.047	ENSHGLG00000008434	PABPC1L	100	62.047	Heterocephalus_glaber_female
ENSTNIG00000017903	pabpc1l	99	62.047	ENSHGLG00100012151	PABPC1L	100	62.047	Heterocephalus_glaber_male
ENSTNIG00000017903	pabpc1l	57	79.888	ENSHGLG00100019506	-	100	79.888	Heterocephalus_glaber_male
ENSTNIG00000017903	pabpc1l	94	81.681	ENSHCOG00000009270	pabpc1l	99	81.681	Hippocampus_comes
ENSTNIG00000017903	pabpc1l	98	74.920	ENSIPUG00000012602	pabpc1l	99	74.920	Ictalurus_punctatus
ENSTNIG00000017903	pabpc1l	58	61.714	ENSIPUG00000006780	-	85	61.714	Ictalurus_punctatus
ENSTNIG00000017903	pabpc1l	58	61.714	ENSIPUG00000006760	-	88	61.714	Ictalurus_punctatus
ENSTNIG00000017903	pabpc1l	98	64.865	ENSSTOG00000003739	PABPC1L	99	64.865	Ictidomys_tridecemlineatus
ENSTNIG00000017903	pabpc1l	98	51.773	ENSJJAG00000022406	Pabpc1l	99	50.637	Jaculus_jaculus
ENSTNIG00000017903	pabpc1l	98	82.419	ENSKMAG00000016847	pabpc1l	99	82.419	Kryptolebias_marmoratus
ENSTNIG00000017903	pabpc1l	98	85.209	ENSLBEG00000010084	pabpc1l	99	85.209	Labrus_bergylta
ENSTNIG00000017903	pabpc1l	99	70.405	ENSLACG00000005762	PABPC1L	95	74.618	Latimeria_chalumnae
ENSTNIG00000017903	pabpc1l	100	77.465	ENSLOCG00000007519	pabpc1l	100	77.465	Lepisosteus_oculatus
ENSTNIG00000017903	pabpc1l	98	63.836	ENSLAFG00000003553	PABPC1L	100	63.836	Loxodonta_africana
ENSTNIG00000017903	pabpc1l	98	65.823	ENSMFAG00000040365	PABPC1L	99	65.823	Macaca_fascicularis
ENSTNIG00000017903	pabpc1l	98	64.873	ENSMNEG00000032298	PABPC1L	99	64.873	Macaca_nemestrina
ENSTNIG00000017903	pabpc1l	98	65.506	ENSMLEG00000043139	PABPC1L	99	65.506	Mandrillus_leucophaeus
ENSTNIG00000017903	pabpc1l	96	85.667	ENSMAMG00000011854	pabpc1l	97	85.667	Mastacembelus_armatus
ENSTNIG00000017903	pabpc1l	98	85.048	ENSMZEG00005023713	pabpc1l	99	85.048	Maylandia_zebra
ENSTNIG00000017903	pabpc1l	99	69.793	ENSMGAG00000003674	PABPC1L	99	69.793	Meleagris_gallopavo
ENSTNIG00000017903	pabpc1l	98	57.753	ENSMOCG00000013186	Pabpc1l	98	57.753	Microtus_ochrogaster
ENSTNIG00000017903	pabpc1l	98	85.668	ENSMMOG00000020574	-	99	85.668	Mola_mola
ENSTNIG00000017903	pabpc1l	96	68.679	ENSMODG00000016198	PABPC1L	99	68.679	Monodelphis_domestica
ENSTNIG00000017903	pabpc1l	96	85.338	ENSMALG00000021622	pabpc1l	100	85.338	Monopterus_albus
ENSTNIG00000017903	pabpc1l	98	58.991	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	58.991	Mus_caroli
ENSTNIG00000017903	pabpc1l	98	58.991	ENSMUSG00000054582	Pabpc1l	99	58.991	Mus_musculus
ENSTNIG00000017903	pabpc1l	98	59.119	MGP_PahariEiJ_G0026071	Pabpc1l	99	59.119	Mus_pahari
ENSTNIG00000017903	pabpc1l	98	58.991	MGP_SPRETEiJ_G0025549	Pabpc1l	99	58.991	Mus_spretus
ENSTNIG00000017903	pabpc1l	98	66.346	ENSMPUG00000017646	PABPC1L	99	66.346	Mustela_putorius_furo
ENSTNIG00000017903	pabpc1l	97	63.651	ENSMLUG00000006324	PABPC1L	98	63.651	Myotis_lucifugus
ENSTNIG00000017903	pabpc1l	98	61.111	ENSNGAG00000010458	Pabpc1l	99	60.630	Nannospalax_galili
ENSTNIG00000017903	pabpc1l	98	84.863	ENSNBRG00000016633	pabpc1l	99	84.863	Neolamprologus_brichardi
ENSTNIG00000017903	pabpc1l	89	62.857	ENSMEUG00000007905	-	89	62.857	Notamacropus_eugenii
ENSTNIG00000017903	pabpc1l	98	63.823	ENSOPRG00000011846	PABPC1L	99	63.823	Ochotona_princeps
ENSTNIG00000017903	pabpc1l	99	59.486	ENSODEG00000015482	PABPC1L	99	59.486	Octodon_degus
ENSTNIG00000017903	pabpc1l	56	72.671	ENSODEG00000002920	-	97	72.671	Octodon_degus
ENSTNIG00000017903	pabpc1l	98	85.209	ENSONIG00000017314	pabpc1l	99	85.209	Oreochromis_niloticus
ENSTNIG00000017903	pabpc1l	89	59.436	ENSOANG00000015793	-	100	59.436	Ornithorhynchus_anatinus
ENSTNIG00000017903	pabpc1l	98	61.315	ENSOCUG00000003005	PABPC1L	100	61.774	Oryctolagus_cuniculus
ENSTNIG00000017903	pabpc1l	98	81.804	ENSORLG00000010322	pabpc1l	99	84.286	Oryzias_latipes
ENSTNIG00000017903	pabpc1l	98	81.804	ENSORLG00020021193	pabpc1l	99	84.286	Oryzias_latipes_hni
ENSTNIG00000017903	pabpc1l	98	81.804	ENSORLG00015017018	pabpc1l	99	84.286	Oryzias_latipes_hsok
ENSTNIG00000017903	pabpc1l	98	79.570	ENSOMEG00000010789	pabpc1l	99	79.570	Oryzias_melastigma
ENSTNIG00000017903	pabpc1l	98	64.659	ENSOGAG00000032999	PABPC1L	99	64.659	Otolemur_garnettii
ENSTNIG00000017903	pabpc1l	98	64.480	ENSOARG00000004578	PABPC1L	99	64.480	Ovis_aries
ENSTNIG00000017903	pabpc1l	98	66.134	ENSPPAG00000039677	PABPC1L	99	66.134	Pan_paniscus
ENSTNIG00000017903	pabpc1l	61	64.308	ENSPPRG00000019327	-	98	64.308	Panthera_pardus
ENSTNIG00000017903	pabpc1l	97	66.397	ENSPTIG00000006524	PABPC1L	99	66.397	Panthera_tigris_altaica
ENSTNIG00000017903	pabpc1l	67	73.846	ENSPTRG00000013531	PABPC1L	98	73.846	Pan_troglodytes
ENSTNIG00000017903	pabpc1l	98	65.506	ENSPANG00000018788	PABPC1L	99	65.506	Papio_anubis
ENSTNIG00000017903	pabpc1l	52	74.242	ENSPKIG00000016810	-	93	74.242	Paramormyrops_kingsleyae
ENSTNIG00000017903	pabpc1l	98	77.083	ENSPKIG00000007322	pabpc1l	99	77.083	Paramormyrops_kingsleyae
ENSTNIG00000017903	pabpc1l	66	77.751	ENSPSIG00000013289	PABPC1L	99	77.751	Pelodiscus_sinensis
ENSTNIG00000017903	pabpc1l	61	86.765	ENSPMGG00000023117	pabpc1l	99	86.765	Periophthalmus_magnuspinnatus
ENSTNIG00000017903	pabpc1l	56	82.000	ENSPMGG00000023121	-	93	82.000	Periophthalmus_magnuspinnatus
ENSTNIG00000017903	pabpc1l	98	57.903	ENSPEMG00000020671	Pabpc1l	99	57.903	Peromyscus_maniculatus_bairdii
ENSTNIG00000017903	pabpc1l	98	84.244	ENSPFOG00000013241	pabpc1l	99	84.244	Poecilia_formosa
ENSTNIG00000017903	pabpc1l	98	84.244	ENSPLAG00000017490	-	99	84.244	Poecilia_latipinna
ENSTNIG00000017903	pabpc1l	52	88.550	ENSPLAG00000023686	-	92	88.550	Poecilia_latipinna
ENSTNIG00000017903	pabpc1l	52	88.550	ENSPMEG00000009185	-	88	88.550	Poecilia_mexicana
ENSTNIG00000017903	pabpc1l	98	84.058	ENSPMEG00000007677	pabpc1l	99	84.058	Poecilia_mexicana
ENSTNIG00000017903	pabpc1l	65	90.291	ENSPREG00000015886	pabpc1l	99	90.291	Poecilia_reticulata
ENSTNIG00000017903	pabpc1l	98	66.294	ENSPPYG00000011042	PABPC1L	100	65.823	Pongo_abelii
ENSTNIG00000017903	pabpc1l	65	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSTNIG00000017903	pabpc1l	99	65.446	ENSPCOG00000020630	PABPC1L	100	65.605	Propithecus_coquereli
ENSTNIG00000017903	pabpc1l	98	64.537	ENSPVAG00000012663	PABPC1L	99	64.537	Pteropus_vampyrus
ENSTNIG00000017903	pabpc1l	98	80.515	ENSPNYG00000004101	pabpc1l	99	83.945	Pundamilia_nyererei
ENSTNIG00000017903	pabpc1l	98	70.513	ENSPNAG00000021248	pabpc1l	99	70.513	Pygocentrus_nattereri
ENSTNIG00000017903	pabpc1l	98	58.491	ENSRNOG00000012750	Pabpc1l	99	58.491	Rattus_norvegicus
ENSTNIG00000017903	pabpc1l	98	65.506	ENSRBIG00000035381	PABPC1L	99	65.506	Rhinopithecus_bieti
ENSTNIG00000017903	pabpc1l	98	65.974	ENSRROG00000044498	PABPC1L	99	65.974	Rhinopithecus_roxellana
ENSTNIG00000017903	pabpc1l	98	65.335	ENSSBOG00000009532	-	99	65.335	Saimiri_boliviensis_boliviensis
ENSTNIG00000017903	pabpc1l	97	65.517	ENSSHAG00000011446	PABPC1L	100	65.517	Sarcophilus_harrisii
ENSTNIG00000017903	pabpc1l	98	76.160	ENSSFOG00015017304	pabpc1l	99	76.160	Scleropages_formosus
ENSTNIG00000017903	pabpc1l	98	89.262	ENSSMAG00000010516	pabpc1l	98	90.000	Scophthalmus_maximus
ENSTNIG00000017903	pabpc1l	98	85.645	ENSSDUG00000014743	pabpc1l	99	85.645	Seriola_dumerili
ENSTNIG00000017903	pabpc1l	94	86.967	ENSSLDG00000006981	pabpc1l	100	83.003	Seriola_lalandi_dorsalis
ENSTNIG00000017903	pabpc1l	99	69.219	ENSSPUG00000004233	PABPC1L	99	69.219	Sphenodon_punctatus
ENSTNIG00000017903	pabpc1l	98	73.377	ENSSPAG00000017137	pabpc1l	99	73.377	Stegastes_partitus
ENSTNIG00000017903	pabpc1l	99	65.865	ENSSSCG00000007382	PABPC1L	99	65.865	Sus_scrofa
ENSTNIG00000017903	pabpc1l	98	69.036	ENSTGUG00000005114	PABPC1L	99	69.036	Taeniopygia_guttata
ENSTNIG00000017903	pabpc1l	96	94.030	ENSTRUG00000011085	pabpc1l	97	94.030	Takifugu_rubripes
ENSTNIG00000017903	pabpc1l	93	72.696	ENSTBEG00000002851	PABPC1L	79	72.696	Tupaia_belangeri
ENSTNIG00000017903	pabpc1l	93	64.407	ENSTTRG00000007618	PABPC1L	100	64.521	Tursiops_truncatus
ENSTNIG00000017903	pabpc1l	98	64.309	ENSUAMG00000017682	PABPC1L	99	64.309	Ursus_americanus
ENSTNIG00000017903	pabpc1l	65	73.077	ENSUMAG00000025436	PABPC1L	86	73.077	Ursus_maritimus
ENSTNIG00000017903	pabpc1l	96	75.000	ENSVVUG00000018939	PABPC1L	96	75.000	Vulpes_vulpes
ENSTNIG00000017903	pabpc1l	99	67.244	ENSXETG00000022831	pabpc1l	99	67.244	Xenopus_tropicalis
ENSTNIG00000017903	pabpc1l	98	81.804	ENSXCOG00000005459	pabpc1l	99	84.507	Xiphophorus_couchianus
ENSTNIG00000017903	pabpc1l	98	83.280	ENSXMAG00000017135	pabpc1l	99	83.280	Xiphophorus_maculatus