EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000018307 (Gene tree)
Gene ID: -
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 1502 bases
Position: chr11:8944277-8945778
Accession: ZDB-GENE-020419-26
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000021473	zf-U1	PF06220.12	8.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000021708	-	553	-	ENSTNIP00000021473	161 (aa)	-	H3DLS5

Gene Model

Click here to download ENSTNIG00000018307's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000018307's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000018307	snrpc	100	88.272	ENSAPOG00000013907	snrpc	100	88.272	Acanthochromis_polyacanthus
ENSTNIG00000018307	snrpc	100	88.272	ENSAOCG00000021151	snrpc	100	88.272	Amphiprion_ocellaris
ENSTNIG00000018307	snrpc	100	88.272	ENSAPEG00000023221	snrpc	100	88.272	Amphiprion_percula
ENSTNIG00000018307	snrpc	100	88.272	ENSATEG00000025133	snrpc	100	88.272	Anabas_testudineus
ENSTNIG00000018307	snrpc	100	59.259	ENSANAG00000021444	-	83	54.745	Aotus_nancymaae
ENSTNIG00000018307	snrpc	100	62.112	ENSANAG00000021026	-	100	57.764	Aotus_nancymaae
ENSTNIG00000018307	snrpc	100	72.050	ENSANAG00000019157	-	100	70.988	Aotus_nancymaae
ENSTNIG00000018307	snrpc	100	78.395	ENSAMXG00000032641	snrpc	100	66.049	Astyanax_mexicanus
ENSTNIG00000018307	snrpc	100	61.491	ENSCAFG00000025525	-	100	55.030	Canis_familiaris
ENSTNIG00000018307	snrpc	99	66.038	ENSCAFG00020009944	-	90	66.875	Canis_lupus_dingo
ENSTNIG00000018307	snrpc	100	62.651	ENSCHIG00000005039	-	100	56.322	Capra_hircus
ENSTNIG00000018307	snrpc	100	54.545	ENSCCAG00000028293	-	100	55.280	Cebus_capucinus
ENSTNIG00000018307	snrpc	99	66.875	ENSCLAG00000010242	-	86	59.748	Chinchilla_lanigera
ENSTNIG00000018307	snrpc	100	64.596	ENSCHOG00000011439	SNRPC	88	66.250	Choloepus_hoffmanni
ENSTNIG00000018307	snrpc	97	49.359	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
ENSTNIG00000018307	snrpc	100	62.733	ENSCGRG00001021483	-	100	61.111	Cricetulus_griseus_chok1gshd
ENSTNIG00000018307	snrpc	99	81.761	ENSCSEG00000016845	snrpc	100	85.093	Cynoglossus_semilaevis
ENSTNIG00000018307	snrpc	100	79.012	ENSDARG00000009871	snrpc	100	75.155	Danio_rerio
ENSTNIG00000018307	snrpc	98	65.823	ENSETEG00000011265	-	100	67.925	Echinops_telfairi
ENSTNIG00000018307	snrpc	99	63.125	ENSEEUG00000014633	SNRPC	90	63.975	Erinaceus_europaeus
ENSTNIG00000018307	snrpc	100	76.543	ENSELUG00000000815	SNRPC	100	73.292	Esox_lucius
ENSTNIG00000018307	snrpc	100	74.096	ENSELUG00000020489	snrpc	100	68.098	Esox_lucius
ENSTNIG00000018307	snrpc	75	86.777	ENSFHEG00000016667	snrpc	97	86.777	Fundulus_heteroclitus
ENSTNIG00000018307	snrpc	100	70.186	ENSHGLG00100017764	-	100	70.370	Heterocephalus_glaber_male
ENSTNIG00000018307	snrpc	100	79.630	ENSIPUG00000024851	snrpc	100	73.913	Ictalurus_punctatus
ENSTNIG00000018307	snrpc	100	65.217	ENSMMUG00000045425	-	100	65.432	Macaca_mulatta
ENSTNIG00000018307	snrpc	97	56.410	ENSMLEG00000039724	-	81	53.205	Mandrillus_leucophaeus
ENSTNIG00000018307	snrpc	98	87.421	ENSMMOG00000013149	snrpc	100	87.421	Mola_mola
ENSTNIG00000018307	snrpc	100	61.798	ENSMALG00000001197	snrpc	100	78.882	Monopterus_albus
ENSTNIG00000018307	snrpc	89	70.833	ENSMUSG00000024217	Snrpc	100	73.457	Mus_musculus
ENSTNIG00000018307	snrpc	89	67.763	ENSOANG00000003405	SNRPC	100	69.536	Ornithorhynchus_anatinus
ENSTNIG00000018307	snrpc	75	86.777	ENSOMEG00000012014	snrpc	86	76.398	Oryzias_melastigma
ENSTNIG00000018307	snrpc	100	65.432	ENSPANG00000018228	-	94	64.198	Papio_anubis
ENSTNIG00000018307	snrpc	100	73.292	ENSPKIG00000001671	SNRPC	100	73.292	Paramormyrops_kingsleyae
ENSTNIG00000018307	snrpc	60	84.375	ENSPKIG00000003136	snrpc	100	78.344	Paramormyrops_kingsleyae
ENSTNIG00000018307	snrpc	99	69.182	ENSPMGG00000022162	snrpc	100	79.114	Periophthalmus_magnuspinnatus
ENSTNIG00000018307	snrpc	100	69.565	ENSPEMG00000002763	-	100	66.460	Peromyscus_maniculatus_bairdii
ENSTNIG00000018307	snrpc	99	64.151	ENSPMAG00000000602	snrpc	98	66.667	Petromyzon_marinus
ENSTNIG00000018307	snrpc	99	70.440	ENSPREG00000013017	snrpc	79	71.069	Poecilia_reticulata
ENSTNIG00000018307	snrpc	85	64.964	ENSPNYG00000004900	snrpc	100	66.667	Pundamilia_nyererei
ENSTNIG00000018307	snrpc	100	77.160	ENSPNAG00000012799	snrpc	100	75.776	Pygocentrus_nattereri
ENSTNIG00000018307	snrpc	98	58.228	ENSSBOG00000032882	-	93	58.896	Saimiri_boliviensis_boliviensis
ENSTNIG00000018307	snrpc	98	65.409	ENSSBOG00000023189	-	78	66.667	Saimiri_boliviensis_boliviensis
ENSTNIG00000018307	snrpc	60	79.167	ENSSFOG00015019150	snrpc	100	71.429	Scleropages_formosus
ENSTNIG00000018307	snrpc	58	85.106	ENSSFOG00015022422	snrpc	86	80.882	Scleropages_formosus
ENSTNIG00000018307	snrpc	100	88.272	ENSSMAG00000008029	snrpc	100	88.272	Scophthalmus_maximus
ENSTNIG00000018307	snrpc	100	88.272	ENSSDUG00000018895	snrpc	81	88.272	Seriola_dumerili
ENSTNIG00000018307	snrpc	100	88.272	ENSSLDG00000005034	snrpc	100	88.272	Seriola_lalandi_dorsalis
ENSTNIG00000018307	snrpc	100	88.272	ENSSPAG00000000914	snrpc	100	88.272	Stegastes_partitus
ENSTNIG00000018307	snrpc	100	90.683	ENSTRUG00000021651	snrpc	100	90.683	Takifugu_rubripes
ENSTNIG00000018307	snrpc	89	56.250	ENSTBEG00000016759	-	79	49.020	Tupaia_belangeri
ENSTNIG00000018307	snrpc	97	71.338	ENSVVUG00000010467	-	87	69.182	Vulpes_vulpes
ENSTNIG00000018307	snrpc	98	83.648	ENSXCOG00000015871	-	100	83.648	Xiphophorus_couchianus