EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000018963 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 6955 bases
Position: chrUn_random:10562935-10569889
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000022150	RRM_1	PF00076.22	2.2e-16	1	2
ENSTNIP00000022150	RRM_1	PF00076.22	2.2e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000022388	-	1837	-	ENSTNIP00000022150	504 (aa)	-	H3DNQ1

Gene Model

Click here to download ENSTNIG00000018963's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000018963's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000018963	rnpc3	97	55.311	ENSG00000185946	RNPC3	96	56.391	Homo_sapiens
ENSTNIG00000018963	rnpc3	100	78.571	ENSAPOG00000017371	rnpc3	99	78.571	Acanthochromis_polyacanthus
ENSTNIG00000018963	rnpc3	97	55.400	ENSAMEG00000001694	RNPC3	95	55.400	Ailuropoda_melanoleuca
ENSTNIG00000018963	rnpc3	99	71.820	ENSACIG00000021043	rnpc3	99	71.820	Amphilophus_citrinellus
ENSTNIG00000018963	rnpc3	100	78.125	ENSAOCG00000014052	rnpc3	98	78.278	Amphiprion_ocellaris
ENSTNIG00000018963	rnpc3	100	77.734	ENSAPEG00000008739	rnpc3	98	77.886	Amphiprion_percula
ENSTNIG00000018963	rnpc3	100	75.629	ENSATEG00000021263	rnpc3	99	75.629	Anabas_testudineus
ENSTNIG00000018963	rnpc3	89	54.989	ENSAPLG00000015605	RNPC3	99	54.204	Anas_platyrhynchos
ENSTNIG00000018963	rnpc3	96	54.825	ENSACAG00000002029	RNPC3	96	54.545	Anolis_carolinensis
ENSTNIG00000018963	rnpc3	97	54.709	ENSANAG00000019950	RNPC3	95	54.709	Aotus_nancymaae
ENSTNIG00000018963	rnpc3	99	76.295	ENSACLG00000014702	rnpc3	99	76.295	Astatotilapia_calliptera
ENSTNIG00000018963	rnpc3	99	63.708	ENSAMXG00000033372	rnpc3	99	63.708	Astyanax_mexicanus
ENSTNIG00000018963	rnpc3	97	54.949	ENSBTAG00000019091	RNPC3	95	54.949	Bos_taurus
ENSTNIG00000018963	rnpc3	97	54.747	ENSCJAG00000035686	RNPC3	95	54.949	Callithrix_jacchus
ENSTNIG00000018963	rnpc3	97	55.110	ENSCAFG00000019972	RNPC3	95	55.110	Canis_familiaris
ENSTNIG00000018963	rnpc3	97	55.110	ENSCAFG00020011300	RNPC3	95	55.110	Canis_lupus_dingo
ENSTNIG00000018963	rnpc3	97	55.444	ENSCHIG00000020361	RNPC3	95	54.747	Capra_hircus
ENSTNIG00000018963	rnpc3	97	54.309	ENSTSYG00000030256	RNPC3	95	54.309	Carlito_syrichta
ENSTNIG00000018963	rnpc3	86	46.396	ENSCAPG00000013600	RNPC3	99	46.171	Cavia_aperea
ENSTNIG00000018963	rnpc3	97	53.800	ENSCPOG00000031638	RNPC3	95	53.800	Cavia_porcellus
ENSTNIG00000018963	rnpc3	97	54.709	ENSCCAG00000024301	RNPC3	95	54.709	Cebus_capucinus
ENSTNIG00000018963	rnpc3	97	42.566	ENSCATG00000035930	-	95	41.870	Cercocebus_atys
ENSTNIG00000018963	rnpc3	97	55.110	ENSCATG00000002086	RNPC3	95	55.110	Cercocebus_atys
ENSTNIG00000018963	rnpc3	97	53.106	ENSCLAG00000005169	RNPC3	95	53.280	Chinchilla_lanigera
ENSTNIG00000018963	rnpc3	97	54.910	ENSCSAG00000001519	RNPC3	95	54.910	Chlorocebus_sabaeus
ENSTNIG00000018963	rnpc3	97	55.466	ENSCPBG00000028311	RNPC3	95	56.539	Chrysemys_picta_bellii
ENSTNIG00000018963	rnpc3	95	37.243	ENSCSAVG00000002800	-	76	53.846	Ciona_savignyi
ENSTNIG00000018963	rnpc3	97	55.110	ENSCANG00000031444	RNPC3	95	55.110	Colobus_angolensis_palliatus
ENSTNIG00000018963	rnpc3	97	54.910	ENSCGRG00001019276	Rnpc3	95	54.910	Cricetulus_griseus_chok1gshd
ENSTNIG00000018963	rnpc3	89	53.579	ENSCGRG00000000053	Rnpc3	99	53.579	Cricetulus_griseus_crigri
ENSTNIG00000018963	rnpc3	99	71.713	ENSCSEG00000013475	rnpc3	99	71.713	Cynoglossus_semilaevis
ENSTNIG00000018963	rnpc3	100	73.398	ENSCVAG00000002645	rnpc3	99	73.398	Cyprinodon_variegatus
ENSTNIG00000018963	rnpc3	99	63.458	ENSDARG00000011247	rnpc3	99	64.694	Danio_rerio
ENSTNIG00000018963	rnpc3	97	55.711	ENSDNOG00000047498	-	95	55.711	Dasypus_novemcinctus
ENSTNIG00000018963	rnpc3	97	55.511	ENSDNOG00000044555	-	95	55.511	Dasypus_novemcinctus
ENSTNIG00000018963	rnpc3	97	53.550	ENSDORG00000027343	Rnpc3	95	53.550	Dipodomys_ordii
ENSTNIG00000018963	rnpc3	97	51.076	ENSEBUG00000002068	rnpc3	96	51.076	Eptatretus_burgeri
ENSTNIG00000018963	rnpc3	97	55.061	ENSEASG00005015957	RNPC3	95	55.061	Equus_asinus_asinus
ENSTNIG00000018963	rnpc3	97	54.819	ENSECAG00000021148	RNPC3	95	54.819	Equus_caballus
ENSTNIG00000018963	rnpc3	99	67.495	ENSELUG00000002264	rnpc3	99	66.092	Esox_lucius
ENSTNIG00000018963	rnpc3	97	55.138	ENSFCAG00000024312	RNPC3	95	55.556	Felis_catus
ENSTNIG00000018963	rnpc3	89	56.954	ENSFALG00000002580	RNPC3	99	57.820	Ficedula_albicollis
ENSTNIG00000018963	rnpc3	97	53.707	ENSFDAG00000019948	RNPC3	95	53.707	Fukomys_damarensis
ENSTNIG00000018963	rnpc3	52	64.015	ENSFHEG00000020647	rnpc3	99	67.578	Fundulus_heteroclitus
ENSTNIG00000018963	rnpc3	99	67.525	ENSGMOG00000019213	rnpc3	99	67.262	Gadus_morhua
ENSTNIG00000018963	rnpc3	97	55.488	ENSGALG00000005162	RNPC3	88	55.488	Gallus_gallus
ENSTNIG00000018963	rnpc3	100	72.211	ENSGAFG00000017236	rnpc3	99	72.994	Gambusia_affinis
ENSTNIG00000018963	rnpc3	99	77.228	ENSGACG00000002048	rnpc3	99	75.728	Gasterosteus_aculeatus
ENSTNIG00000018963	rnpc3	97	56.740	ENSGAGG00000008438	RNPC3	94	56.566	Gopherus_agassizii
ENSTNIG00000018963	rnpc3	99	48.594	ENSGGOG00000026201	-	96	48.594	Gorilla_gorilla
ENSTNIG00000018963	rnpc3	82	73.913	ENSHBUG00000015966	rnpc3	85	76.630	Haplochromis_burtoni
ENSTNIG00000018963	rnpc3	97	52.906	ENSHGLG00000001708	RNPC3	95	53.106	Heterocephalus_glaber_female
ENSTNIG00000018963	rnpc3	97	52.906	ENSHGLG00100003005	RNPC3	95	53.106	Heterocephalus_glaber_male
ENSTNIG00000018963	rnpc3	100	73.819	ENSHCOG00000017135	rnpc3	100	73.819	Hippocampus_comes
ENSTNIG00000018963	rnpc3	99	63.419	ENSIPUG00000002916	rnpc3	99	64.229	Ictalurus_punctatus
ENSTNIG00000018963	rnpc3	97	54.910	ENSSTOG00000025020	RNPC3	95	55.110	Ictidomys_tridecemlineatus
ENSTNIG00000018963	rnpc3	97	54.898	ENSJJAG00000010203	Rnpc3	96	54.858	Jaculus_jaculus
ENSTNIG00000018963	rnpc3	99	73.453	ENSKMAG00000017358	rnpc3	99	75.050	Kryptolebias_marmoratus
ENSTNIG00000018963	rnpc3	100	77.362	ENSLBEG00000024901	rnpc3	98	77.362	Labrus_bergylta
ENSTNIG00000018963	rnpc3	99	58.416	ENSLACG00000005720	RNPC3	90	59.519	Latimeria_chalumnae
ENSTNIG00000018963	rnpc3	99	63.366	ENSLOCG00000007986	rnpc3	99	60.594	Lepisosteus_oculatus
ENSTNIG00000018963	rnpc3	97	55.200	ENSLAFG00000032342	RNPC3	95	55.200	Loxodonta_africana
ENSTNIG00000018963	rnpc3	97	55.110	ENSMFAG00000002004	RNPC3	95	55.110	Macaca_fascicularis
ENSTNIG00000018963	rnpc3	97	41.513	ENSMFAG00000002917	-	95	41.718	Macaca_fascicularis
ENSTNIG00000018963	rnpc3	97	54.910	ENSMMUG00000018039	RNPC3	95	54.910	Macaca_mulatta
ENSTNIG00000018963	rnpc3	80	53.555	ENSMMUG00000002098	-	85	53.555	Macaca_mulatta
ENSTNIG00000018963	rnpc3	97	51.703	ENSMNEG00000033950	RNPC3	95	51.703	Macaca_nemestrina
ENSTNIG00000018963	rnpc3	79	44.975	ENSMNEG00000029209	-	95	40.695	Macaca_nemestrina
ENSTNIG00000018963	rnpc3	97	55.110	ENSMLEG00000033628	RNPC3	95	55.110	Mandrillus_leucophaeus
ENSTNIG00000018963	rnpc3	97	41.870	ENSMLEG00000034644	-	95	42.032	Mandrillus_leucophaeus
ENSTNIG00000018963	rnpc3	99	67.255	ENSMAMG00000007496	rnpc3	99	69.020	Mastacembelus_armatus
ENSTNIG00000018963	rnpc3	99	74.319	ENSMZEG00005020233	rnpc3	99	74.319	Maylandia_zebra
ENSTNIG00000018963	rnpc3	89	55.385	ENSMGAG00000006381	RNPC3	99	54.725	Meleagris_gallopavo
ENSTNIG00000018963	rnpc3	97	55.400	ENSMAUG00000001358	Rnpc3	95	55.000	Mesocricetus_auratus
ENSTNIG00000018963	rnpc3	97	54.747	ENSMICG00000029591	RNPC3	95	54.949	Microcebus_murinus
ENSTNIG00000018963	rnpc3	97	55.378	ENSMOCG00000013423	Rnpc3	95	55.378	Microtus_ochrogaster
ENSTNIG00000018963	rnpc3	100	72.871	ENSMMOG00000005309	rnpc3	99	74.851	Mola_mola
ENSTNIG00000018963	rnpc3	97	55.375	ENSMODG00000002946	RNPC3	95	55.375	Monodelphis_domestica
ENSTNIG00000018963	rnpc3	99	72.016	ENSMALG00000015471	rnpc3	100	72.016	Monopterus_albus
ENSTNIG00000018963	rnpc3	97	54.691	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.691	Mus_caroli
ENSTNIG00000018963	rnpc3	97	54.871	ENSMUSG00000027981	Rnpc3	99	53.474	Mus_musculus
ENSTNIG00000018963	rnpc3	97	54.257	MGP_PahariEiJ_G0027001	Rnpc3	97	54.257	Mus_pahari
ENSTNIG00000018963	rnpc3	97	54.672	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.672	Mus_spretus
ENSTNIG00000018963	rnpc3	97	54.762	ENSMPUG00000007349	RNPC3	95	54.762	Mustela_putorius_furo
ENSTNIG00000018963	rnpc3	97	54.691	ENSMLUG00000028743	RNPC3	95	54.691	Myotis_lucifugus
ENSTNIG00000018963	rnpc3	97	54.910	ENSNGAG00000010939	Rnpc3	95	54.910	Nannospalax_galili
ENSTNIG00000018963	rnpc3	99	76.693	ENSNBRG00000012196	rnpc3	96	76.693	Neolamprologus_brichardi
ENSTNIG00000018963	rnpc3	97	55.311	ENSNLEG00000012013	RNPC3	95	55.311	Nomascus_leucogenys
ENSTNIG00000018963	rnpc3	97	53.737	ENSODEG00000007612	RNPC3	95	53.737	Octodon_degus
ENSTNIG00000018963	rnpc3	99	75.984	ENSONIG00000004770	rnpc3	100	77.755	Oreochromis_niloticus
ENSTNIG00000018963	rnpc3	92	55.983	ENSOANG00000008220	RNPC3	99	54.777	Ornithorhynchus_anatinus
ENSTNIG00000018963	rnpc3	97	54.709	ENSOCUG00000004016	RNPC3	95	54.217	Oryctolagus_cuniculus
ENSTNIG00000018963	rnpc3	100	73.228	ENSORLG00000005694	rnpc3	99	73.228	Oryzias_latipes
ENSTNIG00000018963	rnpc3	100	73.611	ENSORLG00020005513	rnpc3	99	73.611	Oryzias_latipes_hni
ENSTNIG00000018963	rnpc3	99	73.373	ENSORLG00015002179	rnpc3	99	73.373	Oryzias_latipes_hsok
ENSTNIG00000018963	rnpc3	100	73.228	ENSOMEG00000017737	rnpc3	99	73.228	Oryzias_melastigma
ENSTNIG00000018963	rnpc3	97	55.061	ENSOGAG00000026182	RNPC3	95	55.061	Otolemur_garnettii
ENSTNIG00000018963	rnpc3	97	55.444	ENSOARG00000018719	RNPC3	95	54.747	Ovis_aries
ENSTNIG00000018963	rnpc3	99	49.102	ENSPPAG00000030278	-	97	48.996	Pan_paniscus
ENSTNIG00000018963	rnpc3	97	55.242	ENSPPAG00000037459	RNPC3	95	55.242	Pan_paniscus
ENSTNIG00000018963	rnpc3	97	55.689	ENSPPRG00000020246	RNPC3	95	55.689	Panthera_pardus
ENSTNIG00000018963	rnpc3	97	55.689	ENSPTIG00000009887	RNPC3	97	55.689	Panthera_tigris_altaica
ENSTNIG00000018963	rnpc3	97	54.910	ENSPTRG00000033902	RNPC3	95	54.910	Pan_troglodytes
ENSTNIG00000018963	rnpc3	98	48.485	ENSPTRG00000044227	-	97	48.485	Pan_troglodytes
ENSTNIG00000018963	rnpc3	97	43.863	ENSPANG00000029957	-	96	42.828	Papio_anubis
ENSTNIG00000018963	rnpc3	97	55.311	ENSPANG00000012137	RNPC3	95	55.311	Papio_anubis
ENSTNIG00000018963	rnpc3	99	64.961	ENSPKIG00000008828	rnpc3	99	61.417	Paramormyrops_kingsleyae
ENSTNIG00000018963	rnpc3	64	54.242	ENSPSIG00000007396	RNPC3	99	54.242	Pelodiscus_sinensis
ENSTNIG00000018963	rnpc3	99	63.529	ENSPMGG00000011742	rnpc3	99	63.529	Periophthalmus_magnuspinnatus
ENSTNIG00000018963	rnpc3	89	54.230	ENSPEMG00000020112	Rnpc3	99	54.230	Peromyscus_maniculatus_bairdii
ENSTNIG00000018963	rnpc3	95	42.015	ENSPMAG00000003778	rnpc3	95	43.275	Petromyzon_marinus
ENSTNIG00000018963	rnpc3	97	55.984	ENSPCIG00000004415	-	95	55.984	Phascolarctos_cinereus
ENSTNIG00000018963	rnpc3	99	73.913	ENSPFOG00000009895	rnpc3	99	73.913	Poecilia_formosa
ENSTNIG00000018963	rnpc3	99	73.715	ENSPLAG00000012023	rnpc3	99	73.715	Poecilia_latipinna
ENSTNIG00000018963	rnpc3	99	74.213	ENSPMEG00000003663	rnpc3	99	73.913	Poecilia_mexicana
ENSTNIG00000018963	rnpc3	100	73.477	ENSPREG00000010206	rnpc3	99	73.477	Poecilia_reticulata
ENSTNIG00000018963	rnpc3	81	51.196	ENSPPYG00000001102	RNPC3	94	51.196	Pongo_abelii
ENSTNIG00000018963	rnpc3	99	76.096	ENSPNYG00000020603	rnpc3	99	76.096	Pundamilia_nyererei
ENSTNIG00000018963	rnpc3	99	56.008	ENSPNAG00000000524	rnpc3	92	56.008	Pygocentrus_nattereri
ENSTNIG00000018963	rnpc3	97	54.890	ENSRNOG00000017310	Rnpc3	95	54.890	Rattus_norvegicus
ENSTNIG00000018963	rnpc3	97	51.411	ENSRBIG00000043897	RNPC3	95	51.411	Rhinopithecus_bieti
ENSTNIG00000018963	rnpc3	97	55.110	ENSRROG00000032334	RNPC3	95	55.110	Rhinopithecus_roxellana
ENSTNIG00000018963	rnpc3	97	55.110	ENSSBOG00000024473	RNPC3	95	55.110	Saimiri_boliviensis_boliviensis
ENSTNIG00000018963	rnpc3	97	55.758	ENSSHAG00000011859	RNPC3	95	55.758	Sarcophilus_harrisii
ENSTNIG00000018963	rnpc3	100	65.815	ENSSFOG00015013055	rnpc3	99	67.755	Scleropages_formosus
ENSTNIG00000018963	rnpc3	100	75.194	ENSSMAG00000020346	rnpc3	99	75.194	Scophthalmus_maximus
ENSTNIG00000018963	rnpc3	100	77.432	ENSSDUG00000006600	rnpc3	99	77.432	Seriola_dumerili
ENSTNIG00000018963	rnpc3	100	77.432	ENSSLDG00000007979	rnpc3	99	77.432	Seriola_lalandi_dorsalis
ENSTNIG00000018963	rnpc3	97	52.041	ENSSPUG00000003872	-	92	52.041	Sphenodon_punctatus
ENSTNIG00000018963	rnpc3	95	56.405	ENSSPUG00000008539	-	92	56.405	Sphenodon_punctatus
ENSTNIG00000018963	rnpc3	100	75.494	ENSSPAG00000005633	rnpc3	99	76.877	Stegastes_partitus
ENSTNIG00000018963	rnpc3	97	55.689	ENSSSCG00000037254	RNPC3	95	55.289	Sus_scrofa
ENSTNIG00000018963	rnpc3	89	56.541	ENSTGUG00000004795	-	99	54.767	Taeniopygia_guttata
ENSTNIG00000018963	rnpc3	53	74.444	ENSTRUG00000022341	rnpc3	66	85.799	Takifugu_rubripes
ENSTNIG00000018963	rnpc3	97	55.110	ENSUMAG00000007775	RNPC3	97	55.110	Ursus_maritimus
ENSTNIG00000018963	rnpc3	97	55.110	ENSVVUG00000000331	RNPC3	95	55.110	Vulpes_vulpes
ENSTNIG00000018963	rnpc3	97	46.245	ENSXETG00000025027	rnpc3	96	45.924	Xenopus_tropicalis
ENSTNIG00000018963	rnpc3	53	75.185	ENSXCOG00000005013	rnpc3	99	72.254	Xiphophorus_couchianus
ENSTNIG00000018963	rnpc3	100	72.798	ENSXMAG00000006495	rnpc3	99	73.581	Xiphophorus_maculatus