EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000000150 (Gene tree)
Gene ID: 101064659
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 10276 bases
Position: chr22:8650404-8660679
Accession: 101064659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000000309	UPF1_Zn_bind	PF09416.10	2.2e-75	1	1
ENSTRUP00000000308	UPF1_Zn_bind	PF09416.10	2.4e-75	1	1
ENSTRUP00000000309	ResIII	PF04851.15	2.4e-05	1	1
ENSTRUP00000000308	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000000311	-	5794	XM_003975665	ENSTRUP00000000308	1111 (aa)	XP_003975714	H2RJJ5
ENSTRUT00000000312	-	3249	-	ENSTRUP00000000309	1082 (aa)	-	H2RJJ6

Gene Model

Click here to download ENSTRUG00000000150's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000000150's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000000150	upf1	100	92.182	ENSTRUG00000005131	-	100	92.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000000150	upf1	100	90.438	ENSG00000005007	UPF1	100	90.438	Homo_sapiens
ENSTRUG00000000150	upf1	100	92.468	ENSAPOG00000010916	-	100	92.650	Acanthochromis_polyacanthus
ENSTRUG00000000150	upf1	100	96.140	ENSAPOG00000023773	upf1	100	96.140	Acanthochromis_polyacanthus
ENSTRUG00000000150	upf1	100	89.778	ENSAMEG00000011474	UPF1	100	89.867	Ailuropoda_melanoleuca
ENSTRUG00000000150	upf1	100	95.148	ENSACIG00000019949	upf1	100	95.148	Amphilophus_citrinellus
ENSTRUG00000000150	upf1	94	92.976	ENSACIG00000010985	-	100	93.073	Amphilophus_citrinellus
ENSTRUG00000000150	upf1	100	96.230	ENSAOCG00000018519	upf1	100	96.230	Amphiprion_ocellaris
ENSTRUG00000000150	upf1	100	92.377	ENSAOCG00000006352	-	100	92.559	Amphiprion_ocellaris
ENSTRUG00000000150	upf1	100	92.287	ENSAPEG00000006292	-	100	92.468	Amphiprion_percula
ENSTRUG00000000150	upf1	100	96.230	ENSAPEG00000016344	upf1	100	96.230	Amphiprion_percula
ENSTRUG00000000150	upf1	100	92.287	ENSATEG00000016606	-	100	92.468	Anabas_testudineus
ENSTRUG00000000150	upf1	100	95.789	ENSATEG00000017867	upf1	100	95.161	Anabas_testudineus
ENSTRUG00000000150	upf1	95	92.315	ENSAPLG00000009175	UPF1	100	92.315	Anas_platyrhynchos
ENSTRUG00000000150	upf1	95	90.580	ENSANAG00000024107	UPF1	95	90.580	Aotus_nancymaae
ENSTRUG00000000150	upf1	100	94.722	ENSACLG00000007181	upf1	100	94.982	Astatotilapia_calliptera
ENSTRUG00000000150	upf1	100	92.468	ENSACLG00000022630	-	100	92.468	Astatotilapia_calliptera
ENSTRUG00000000150	upf1	100	93.636	ENSAMXG00000042187	upf1	100	93.818	Astyanax_mexicanus
ENSTRUG00000000150	upf1	100	89.885	ENSBTAG00000020922	UPF1	100	89.885	Bos_taurus
ENSTRUG00000000150	upf1	82	54.464	WBGene00004880	smg-2	99	48.172	Caenorhabditis_elegans
ENSTRUG00000000150	upf1	100	89.558	ENSCJAG00000019627	UPF1	100	89.558	Callithrix_jacchus
ENSTRUG00000000150	upf1	100	89.646	ENSCAFG00000014578	UPF1	100	89.646	Canis_familiaris
ENSTRUG00000000150	upf1	100	90.527	ENSCAFG00020012347	UPF1	100	90.527	Canis_lupus_dingo
ENSTRUG00000000150	upf1	100	90.771	ENSCHIG00000011018	UPF1	100	90.771	Capra_hircus
ENSTRUG00000000150	upf1	95	92.008	ENSTSYG00000008877	UPF1	98	92.008	Carlito_syrichta
ENSTRUG00000000150	upf1	95	91.920	ENSCAPG00000005758	UPF1	95	91.920	Cavia_aperea
ENSTRUG00000000150	upf1	100	90.991	ENSCPOG00000025463	UPF1	100	90.991	Cavia_porcellus
ENSTRUG00000000150	upf1	100	90.438	ENSCCAG00000032175	UPF1	100	90.438	Cebus_capucinus
ENSTRUG00000000150	upf1	95	91.447	ENSCATG00000040306	UPF1	98	92.073	Cercocebus_atys
ENSTRUG00000000150	upf1	96	91.329	ENSCLAG00000004037	UPF1	99	91.912	Chinchilla_lanigera
ENSTRUG00000000150	upf1	100	90.438	ENSCSAG00000005276	UPF1	100	90.438	Chlorocebus_sabaeus
ENSTRUG00000000150	upf1	100	91.382	ENSCPBG00000012513	UPF1	100	91.382	Chrysemys_picta_bellii
ENSTRUG00000000150	upf1	78	79.882	ENSCING00000021399	-	99	79.647	Ciona_intestinalis
ENSTRUG00000000150	upf1	99	73.000	ENSCSAVG00000006533	-	99	73.364	Ciona_savignyi
ENSTRUG00000000150	upf1	95	91.912	ENSCANG00000029819	UPF1	97	91.912	Colobus_angolensis_palliatus
ENSTRUG00000000150	upf1	100	90.485	ENSCGRG00001021067	Upf1	100	90.510	Cricetulus_griseus_chok1gshd
ENSTRUG00000000150	upf1	95	91.296	ENSCGRG00000013480	Upf1	99	91.296	Cricetulus_griseus_crigri
ENSTRUG00000000150	upf1	100	92.539	ENSCSEG00000016159	-	100	92.532	Cynoglossus_semilaevis
ENSTRUG00000000150	upf1	100	90.349	ENSCSEG00000017239	upf1	100	90.257	Cynoglossus_semilaevis
ENSTRUG00000000150	upf1	100	92.105	ENSCVAG00000010561	upf1	100	92.105	Cyprinodon_variegatus
ENSTRUG00000000150	upf1	100	93.364	ENSDARG00000016302	upf1	100	93.545	Danio_rerio
ENSTRUG00000000150	upf1	95	89.479	ENSDORG00000009984	Upf1	95	89.479	Dipodomys_ordii
ENSTRUG00000000150	upf1	86	72.785	FBgn0030354	Upf1	88	67.464	Drosophila_melanogaster
ENSTRUG00000000150	upf1	55	86.258	ENSEBUG00000010069	upf1	96	86.424	Eptatretus_burgeri
ENSTRUG00000000150	upf1	100	90.771	ENSEASG00005006549	UPF1	100	90.771	Equus_asinus_asinus
ENSTRUG00000000150	upf1	100	90.771	ENSECAG00000010639	UPF1	100	90.771	Equus_caballus
ENSTRUG00000000150	upf1	100	93.200	ENSELUG00000020917	upf1	100	93.563	Esox_lucius
ENSTRUG00000000150	upf1	100	92.412	ENSELUG00000012916	-	100	92.412	Esox_lucius
ENSTRUG00000000150	upf1	100	89.646	ENSFCAG00000009757	UPF1	100	89.646	Felis_catus
ENSTRUG00000000150	upf1	95	93.034	ENSFALG00000009312	UPF1	96	93.034	Ficedula_albicollis
ENSTRUG00000000150	upf1	95	91.817	ENSFDAG00000014816	UPF1	99	91.817	Fukomys_damarensis
ENSTRUG00000000150	upf1	87	94.015	ENSFHEG00000016276	-	96	94.015	Fundulus_heteroclitus
ENSTRUG00000000150	upf1	100	92.225	ENSFHEG00000006428	upf1	97	95.440	Fundulus_heteroclitus
ENSTRUG00000000150	upf1	100	91.712	ENSGMOG00000007541	upf1	100	91.787	Gadus_morhua
ENSTRUG00000000150	upf1	100	90.958	ENSGALG00000003220	UPF1	100	90.958	Gallus_gallus
ENSTRUG00000000150	upf1	64	96.398	ENSGAFG00000015443	-	85	96.398	Gambusia_affinis
ENSTRUG00000000150	upf1	100	92.532	ENSGAFG00000004831	upf1	100	92.532	Gambusia_affinis
ENSTRUG00000000150	upf1	100	91.787	ENSGAGG00000022217	UPF1	100	91.877	Gopherus_agassizii
ENSTRUG00000000150	upf1	95	92.885	ENSGGOG00000002608	UPF1	99	92.885	Gorilla_gorilla
ENSTRUG00000000150	upf1	87	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSTRUG00000000150	upf1	90	98.701	ENSHBUG00000014694	upf1	100	98.701	Haplochromis_burtoni
ENSTRUG00000000150	upf1	100	89.744	ENSHGLG00000010900	UPF1	100	89.744	Heterocephalus_glaber_female
ENSTRUG00000000150	upf1	95	90.399	ENSHGLG00100005904	UPF1	96	90.304	Heterocephalus_glaber_male
ENSTRUG00000000150	upf1	100	93.097	ENSHCOG00000008918	upf1	100	93.182	Hippocampus_comes
ENSTRUG00000000150	upf1	100	93.727	ENSIPUG00000005108	UPF1	100	93.909	Ictalurus_punctatus
ENSTRUG00000000150	upf1	100	90.285	ENSSTOG00000009196	UPF1	100	90.285	Ictidomys_tridecemlineatus
ENSTRUG00000000150	upf1	100	90.027	ENSJJAG00000023151	Upf1	100	90.027	Jaculus_jaculus
ENSTRUG00000000150	upf1	100	92.196	ENSKMAG00000004962	upf1	100	92.015	Kryptolebias_marmoratus
ENSTRUG00000000150	upf1	100	94.345	ENSLBEG00000014862	upf1	100	94.794	Labrus_bergylta
ENSTRUG00000000150	upf1	100	92.384	ENSLBEG00000027848	-	100	92.294	Labrus_bergylta
ENSTRUG00000000150	upf1	64	91.748	ENSLACG00000008482	UPF1	100	92.264	Latimeria_chalumnae
ENSTRUG00000000150	upf1	100	93.279	ENSLOCG00000002072	upf1	100	93.545	Lepisosteus_oculatus
ENSTRUG00000000150	upf1	100	89.539	ENSLAFG00000014963	UPF1	100	89.539	Loxodonta_africana
ENSTRUG00000000150	upf1	100	90.196	ENSMFAG00000037748	UPF1	100	90.196	Macaca_fascicularis
ENSTRUG00000000150	upf1	100	89.956	ENSMMUG00000023286	UPF1	100	89.956	Macaca_mulatta
ENSTRUG00000000150	upf1	100	90.196	ENSMNEG00000000046	UPF1	100	90.196	Macaca_nemestrina
ENSTRUG00000000150	upf1	95	91.912	ENSMLEG00000028404	UPF1	99	91.912	Mandrillus_leucophaeus
ENSTRUG00000000150	upf1	100	96.326	ENSMAMG00000006229	upf1	100	96.326	Mastacembelus_armatus
ENSTRUG00000000150	upf1	100	92.475	ENSMAMG00000006231	-	100	92.656	Mastacembelus_armatus
ENSTRUG00000000150	upf1	100	92.468	ENSMZEG00005016386	-	100	92.468	Maylandia_zebra
ENSTRUG00000000150	upf1	100	94.409	ENSMZEG00005003489	upf1	100	94.699	Maylandia_zebra
ENSTRUG00000000150	upf1	95	91.825	ENSMGAG00000004745	UPF1	100	91.825	Meleagris_gallopavo
ENSTRUG00000000150	upf1	95	91.532	ENSMAUG00000011398	Upf1	95	91.532	Mesocricetus_auratus
ENSTRUG00000000150	upf1	100	90.527	ENSMICG00000001659	UPF1	100	90.527	Microcebus_murinus
ENSTRUG00000000150	upf1	100	89.600	ENSMOCG00000005699	Upf1	100	89.716	Microtus_ochrogaster
ENSTRUG00000000150	upf1	95	90.153	ENSMMOG00000007537	-	99	90.344	Mola_mola
ENSTRUG00000000150	upf1	100	96.059	ENSMMOG00000007881	upf1	100	96.059	Mola_mola
ENSTRUG00000000150	upf1	100	89.673	ENSMODG00000003689	UPF1	100	89.673	Monodelphis_domestica
ENSTRUG00000000150	upf1	100	91.320	ENSMALG00000018100	-	100	91.320	Monopterus_albus
ENSTRUG00000000150	upf1	100	95.300	ENSMALG00000000144	upf1	100	95.576	Monopterus_albus
ENSTRUG00000000150	upf1	100	90.575	MGP_CAROLIEiJ_G0031142	Upf1	100	90.575	Mus_caroli
ENSTRUG00000000150	upf1	100	90.575	ENSMUSG00000058301	Upf1	100	90.575	Mus_musculus
ENSTRUG00000000150	upf1	100	90.575	MGP_PahariEiJ_G0021607	Upf1	100	90.575	Mus_pahari
ENSTRUG00000000150	upf1	100	90.575	MGP_SPRETEiJ_G0032260	Upf1	100	90.575	Mus_spretus
ENSTRUG00000000150	upf1	100	90.527	ENSMPUG00000015516	UPF1	100	90.527	Mustela_putorius_furo
ENSTRUG00000000150	upf1	99	90.404	ENSMLUG00000012122	UPF1	99	90.404	Myotis_lucifugus
ENSTRUG00000000150	upf1	100	89.362	ENSNGAG00000024107	Upf1	100	89.390	Nannospalax_galili
ENSTRUG00000000150	upf1	100	92.721	ENSNBRG00000000670	upf1	100	92.974	Neolamprologus_brichardi
ENSTRUG00000000150	upf1	100	89.064	ENSNBRG00000022069	-	100	92.233	Neolamprologus_brichardi
ENSTRUG00000000150	upf1	95	86.204	ENSNLEG00000006062	UPF1	99	86.204	Nomascus_leucogenys
ENSTRUG00000000150	upf1	83	86.863	ENSMEUG00000014146	-	83	86.863	Notamacropus_eugenii
ENSTRUG00000000150	upf1	95	86.154	ENSOPRG00000014018	UPF1	99	86.154	Ochotona_princeps
ENSTRUG00000000150	upf1	100	90.631	ENSODEG00000012426	UPF1	100	90.811	Octodon_degus
ENSTRUG00000000150	upf1	100	94.319	ENSONIG00000010452	upf1	100	94.609	Oreochromis_niloticus
ENSTRUG00000000150	upf1	100	92.468	ENSONIG00000012729	-	100	92.468	Oreochromis_niloticus
ENSTRUG00000000150	upf1	100	89.876	ENSOANG00000004568	UPF1	100	89.876	Ornithorhynchus_anatinus
ENSTRUG00000000150	upf1	100	91.924	ENSORLG00000008453	upf1	100	91.742	Oryzias_latipes
ENSTRUG00000000150	upf1	100	91.840	ENSORLG00020014758	upf1	100	91.568	Oryzias_latipes_hni
ENSTRUG00000000150	upf1	100	91.840	ENSORLG00015010165	upf1	100	91.568	Oryzias_latipes_hsok
ENSTRUG00000000150	upf1	100	92.196	ENSOMEG00000003665	upf1	100	92.196	Oryzias_melastigma
ENSTRUG00000000150	upf1	100	90.527	ENSOGAG00000012866	UPF1	100	90.527	Otolemur_garnettii
ENSTRUG00000000150	upf1	96	88.613	ENSOARG00000010739	UPF1	100	88.674	Ovis_aries
ENSTRUG00000000150	upf1	95	91.912	ENSPPAG00000043884	UPF1	96	91.912	Pan_paniscus
ENSTRUG00000000150	upf1	100	89.646	ENSPPRG00000023470	UPF1	100	89.646	Panthera_pardus
ENSTRUG00000000150	upf1	95	90.787	ENSPTIG00000010159	UPF1	99	90.787	Panthera_tigris_altaica
ENSTRUG00000000150	upf1	100	90.196	ENSPTRG00000010721	UPF1	100	90.196	Pan_troglodytes
ENSTRUG00000000150	upf1	100	90.196	ENSPANG00000008847	UPF1	100	90.196	Papio_anubis
ENSTRUG00000000150	upf1	92	94.394	ENSPKIG00000006069	upf1	96	94.394	Paramormyrops_kingsleyae
ENSTRUG00000000150	upf1	70	91.906	ENSPSIG00000009491	UPF1	100	91.906	Pelodiscus_sinensis
ENSTRUG00000000150	upf1	100	91.826	ENSPMGG00000017327	upf1	100	92.377	Periophthalmus_magnuspinnatus
ENSTRUG00000000150	upf1	100	89.600	ENSPEMG00000001085	Upf1	100	89.628	Peromyscus_maniculatus_bairdii
ENSTRUG00000000150	upf1	100	87.545	ENSPMAG00000001206	upf1	100	87.263	Petromyzon_marinus
ENSTRUG00000000150	upf1	100	91.055	ENSPCIG00000006156	UPF1	100	91.055	Phascolarctos_cinereus
ENSTRUG00000000150	upf1	100	93.531	ENSPLAG00000018155	-	100	92.773	Poecilia_latipinna
ENSTRUG00000000150	upf1	100	92.532	ENSPLAG00000016232	-	100	92.532	Poecilia_latipinna
ENSTRUG00000000150	upf1	100	93.784	ENSPMEG00000011443	-	100	93.601	Poecilia_mexicana
ENSTRUG00000000150	upf1	100	92.448	ENSPMEG00000016319	-	100	92.448	Poecilia_mexicana
ENSTRUG00000000150	upf1	100	92.441	ENSPREG00000011247	-	100	92.441	Poecilia_reticulata
ENSTRUG00000000150	upf1	100	93.184	ENSPREG00000009940	upf1	100	92.876	Poecilia_reticulata
ENSTRUG00000000150	upf1	100	84.704	ENSPPYG00000009752	UPF1	100	84.704	Pongo_abelii
ENSTRUG00000000150	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSTRUG00000000150	upf1	100	90.125	ENSPCOG00000023813	UPF1	100	90.125	Propithecus_coquereli
ENSTRUG00000000150	upf1	69	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSTRUG00000000150	upf1	100	92.468	ENSPNYG00000016731	-	100	92.468	Pundamilia_nyererei
ENSTRUG00000000150	upf1	100	94.409	ENSPNYG00000003694	upf1	100	94.699	Pundamilia_nyererei
ENSTRUG00000000150	upf1	100	93.545	ENSPNAG00000025614	upf1	100	93.727	Pygocentrus_nattereri
ENSTRUG00000000150	upf1	100	90.395	ENSRNOG00000020134	Upf1	100	90.421	Rattus_norvegicus
ENSTRUG00000000150	upf1	95	89.534	ENSRBIG00000013894	UPF1	98	92.990	Rhinopithecus_bieti
ENSTRUG00000000150	upf1	95	91.912	ENSRROG00000040935	UPF1	98	92.990	Rhinopithecus_roxellana
ENSTRUG00000000150	upf1	75	56.793	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSTRUG00000000150	upf1	95	91.447	ENSSBOG00000023632	UPF1	96	92.073	Saimiri_boliviensis_boliviensis
ENSTRUG00000000150	upf1	95	92.213	ENSSHAG00000010499	UPF1	100	92.213	Sarcophilus_harrisii
ENSTRUG00000000150	upf1	100	93.013	ENSSFOG00015021095	upf1	100	93.013	Scleropages_formosus
ENSTRUG00000000150	upf1	100	92.566	ENSSMAG00000021018	-	100	92.656	Scophthalmus_maximus
ENSTRUG00000000150	upf1	100	93.716	ENSSMAG00000005055	upf1	100	93.896	Scophthalmus_maximus
ENSTRUG00000000150	upf1	100	92.384	ENSSDUG00000009629	-	100	92.475	Seriola_dumerili
ENSTRUG00000000150	upf1	100	96.416	ENSSDUG00000013320	upf1	100	96.416	Seriola_dumerili
ENSTRUG00000000150	upf1	100	95.699	ENSSLDG00000020868	upf1	100	95.699	Seriola_lalandi_dorsalis
ENSTRUG00000000150	upf1	100	92.384	ENSSLDG00000006878	-	100	92.475	Seriola_lalandi_dorsalis
ENSTRUG00000000150	upf1	100	91.253	ENSSPUG00000010538	UPF1	100	91.344	Sphenodon_punctatus
ENSTRUG00000000150	upf1	100	92.461	ENSSPAG00000011521	-	100	92.461	Stegastes_partitus
ENSTRUG00000000150	upf1	100	92.792	ENSSPAG00000000003	upf1	100	92.974	Stegastes_partitus
ENSTRUG00000000150	upf1	100	90.771	ENSSSCG00000039301	UPF1	99	92.898	Sus_scrofa
ENSTRUG00000000150	upf1	83	86.596	ENSTGUG00000001057	UPF1	100	90.089	Taeniopygia_guttata
ENSTRUG00000000150	upf1	100	87.007	ENSTTRG00000011544	UPF1	100	87.007	Tursiops_truncatus
ENSTRUG00000000150	upf1	100	90.527	ENSUAMG00000007093	UPF1	100	90.527	Ursus_americanus
ENSTRUG00000000150	upf1	95	92.898	ENSUMAG00000006652	UPF1	99	93.568	Ursus_maritimus
ENSTRUG00000000150	upf1	100	90.527	ENSVVUG00000007797	UPF1	100	90.527	Vulpes_vulpes
ENSTRUG00000000150	upf1	100	77.661	ENSXETG00000013602	upf1	100	78.081	Xenopus_tropicalis
ENSTRUG00000000150	upf1	97	94.370	ENSXCOG00000015275	-	96	94.370	Xiphophorus_couchianus
ENSTRUG00000000150	upf1	94	93.385	ENSXCOG00000005764	-	99	93.385	Xiphophorus_couchianus
ENSTRUG00000000150	upf1	100	94.557	ENSXMAG00000001703	-	100	94.557	Xiphophorus_maculatus
ENSTRUG00000000150	upf1	100	92.539	ENSXMAG00000002540	-	100	92.539	Xiphophorus_maculatus