EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000000358 (Gene tree)
Gene ID: 101071970
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 7621 bases
Position: chr15:7174479-7182099
Accession: 101071970
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000000830	EST1	PF10374.9	3.9e-13	1	1
ENSTRUP00000000831	EST1	PF10374.9	4.1e-13	1	1
ENSTRUP00000000831	EST1_DNA_bind	PF10373.9	3.6e-60	1	1
ENSTRUP00000000830	EST1_DNA_bind	PF10373.9	2.1e-58	1	1
ENSTRUP00000000831	PIN_4	PF13638.6	1.9e-21	1	1
ENSTRUP00000000830	PIN_4	PF13638.6	7.8e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000000834	-	4371	-	ENSTRUP00000000831	1456 (aa)	-	H2RL18
ENSTRUT00000000833	-	4323	XM_011611426	ENSTRUP00000000830	1440 (aa)	XP_011609728	H2RL17

Gene Model

Click here to download ENSTRUG00000000358's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000000358's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000000358	smg6	100	47.879	ENSG00000070366	SMG6	100	58.835	Homo_sapiens
ENSTRUG00000000358	smg6	99	81.250	ENSAPOG00000019448	smg6	94	81.250	Acanthochromis_polyacanthus
ENSTRUG00000000358	smg6	81	55.128	ENSAMEG00000007632	SMG6	83	54.834	Ailuropoda_melanoleuca
ENSTRUG00000000358	smg6	98	69.979	ENSACIG00000012997	smg6	97	70.528	Amphilophus_citrinellus
ENSTRUG00000000358	smg6	99	84.375	ENSAOCG00000002630	smg6	94	84.375	Amphiprion_ocellaris
ENSTRUG00000000358	smg6	99	84.375	ENSAPEG00000019101	smg6	94	84.375	Amphiprion_percula
ENSTRUG00000000358	smg6	99	70.033	ENSATEG00000006483	smg6	91	70.099	Anabas_testudineus
ENSTRUG00000000358	smg6	69	49.240	ENSACAG00000011783	SMG6	99	43.925	Anolis_carolinensis
ENSTRUG00000000358	smg6	81	55.529	ENSANAG00000035760	SMG6	83	54.589	Aotus_nancymaae
ENSTRUG00000000358	smg6	97	71.118	ENSACLG00000005288	smg6	97	70.107	Astatotilapia_calliptera
ENSTRUG00000000358	smg6	68	70.191	ENSAMXG00000017326	smg6	89	70.757	Astyanax_mexicanus
ENSTRUG00000000358	smg6	86	53.480	ENSBTAG00000000267	SMG6	88	53.078	Bos_taurus
ENSTRUG00000000358	smg6	81	55.672	ENSCJAG00000001820	SMG6	83	54.880	Callithrix_jacchus
ENSTRUG00000000358	smg6	81	55.520	ENSCAFG00000019260	SMG6	83	54.976	Canis_familiaris
ENSTRUG00000000358	smg6	81	55.520	ENSCAFG00020009770	SMG6	83	54.976	Canis_lupus_dingo
ENSTRUG00000000358	smg6	100	49.037	ENSCHIG00000021998	SMG6	100	48.496	Capra_hircus
ENSTRUG00000000358	smg6	100	48.663	ENSTSYG00000003406	SMG6	100	58.459	Carlito_syrichta
ENSTRUG00000000358	smg6	94	42.366	ENSCAPG00000016197	SMG6	99	42.091	Cavia_aperea
ENSTRUG00000000358	smg6	100	47.739	ENSCPOG00000014878	SMG6	100	47.395	Cavia_porcellus
ENSTRUG00000000358	smg6	81	55.529	ENSCCAG00000035801	SMG6	100	48.705	Cebus_capucinus
ENSTRUG00000000358	smg6	100	48.046	ENSCATG00000031956	SMG6	100	47.649	Cercocebus_atys
ENSTRUG00000000358	smg6	100	48.256	ENSCLAG00000006748	SMG6	99	49.626	Chinchilla_lanigera
ENSTRUG00000000358	smg6	81	55.466	ENSCSAG00000013800	SMG6	83	54.798	Chlorocebus_sabaeus
ENSTRUG00000000358	smg6	100	48.416	ENSCPBG00000020369	SMG6	100	49.184	Chrysemys_picta_bellii
ENSTRUG00000000358	smg6	95	49.259	ENSCANG00000031764	SMG6	100	59.023	Colobus_angolensis_palliatus
ENSTRUG00000000358	smg6	81	50.200	ENSCGRG00000007782	Smg6	91	48.498	Cricetulus_griseus_crigri
ENSTRUG00000000358	smg6	98	66.215	ENSCSEG00000012757	smg6	97	65.336	Cynoglossus_semilaevis
ENSTRUG00000000358	smg6	98	63.946	ENSCVAG00000012789	smg6	92	63.858	Cyprinodon_variegatus
ENSTRUG00000000358	smg6	98	57.781	ENSDARG00000100481	smg6	91	59.300	Danio_rerio
ENSTRUG00000000358	smg6	81	54.379	ENSDNOG00000048283	SMG6	100	48.483	Dasypus_novemcinctus
ENSTRUG00000000358	smg6	100	45.232	ENSDORG00000016614	Smg6	100	59.613	Dipodomys_ordii
ENSTRUG00000000358	smg6	92	90.000	ENSETEG00000016790	SMG6	93	90.000	Echinops_telfairi
ENSTRUG00000000358	smg6	63	47.857	ENSEBUG00000005059	smg6	61	47.857	Eptatretus_burgeri
ENSTRUG00000000358	smg6	95	50.034	ENSEASG00005009318	SMG6	97	49.831	Equus_asinus_asinus
ENSTRUG00000000358	smg6	95	50.273	ENSECAG00000006519	SMG6	97	50.068	Equus_caballus
ENSTRUG00000000358	smg6	80	54.021	ENSEEUG00000003493	SMG6	87	45.725	Erinaceus_europaeus
ENSTRUG00000000358	smg6	73	71.107	ENSELUG00000005934	smg6	76	63.105	Esox_lucius
ENSTRUG00000000358	smg6	81	55.208	ENSFCAG00000028817	SMG6	83	55.211	Felis_catus
ENSTRUG00000000358	smg6	94	50.577	ENSFALG00000006538	SMG6	99	50.883	Ficedula_albicollis
ENSTRUG00000000358	smg6	100	48.034	ENSFDAG00000015106	SMG6	100	47.781	Fukomys_damarensis
ENSTRUG00000000358	smg6	98	65.733	ENSFHEG00000013282	smg6	93	65.299	Fundulus_heteroclitus
ENSTRUG00000000358	smg6	51	77.512	ENSGMOG00000019077	smg6	58	77.512	Gadus_morhua
ENSTRUG00000000358	smg6	81	55.949	ENSGALG00000003108	SMG6	81	55.752	Gallus_gallus
ENSTRUG00000000358	smg6	98	63.952	ENSGAFG00000000379	smg6	93	63.607	Gambusia_affinis
ENSTRUG00000000358	smg6	88	85.714	ENSGACG00000020521	smg6	99	82.759	Gasterosteus_aculeatus
ENSTRUG00000000358	smg6	86	52.716	ENSGAGG00000025617	SMG6	89	52.716	Gopherus_agassizii
ENSTRUG00000000358	smg6	100	48.108	ENSGGOG00000017156	SMG6	100	48.763	Gorilla_gorilla
ENSTRUG00000000358	smg6	100	73.572	ENSHBUG00000021311	smg6	100	68.387	Haplochromis_burtoni
ENSTRUG00000000358	smg6	81	55.112	ENSHGLG00000012882	SMG6	84	60.488	Heterocephalus_glaber_female
ENSTRUG00000000358	smg6	81	55.112	ENSHGLG00100017815	SMG6	84	60.488	Heterocephalus_glaber_male
ENSTRUG00000000358	smg6	71	70.124	ENSHCOG00000008761	smg6	83	70.029	Hippocampus_comes
ENSTRUG00000000358	smg6	98	55.199	ENSIPUG00000012493	smg6	93	55.134	Ictalurus_punctatus
ENSTRUG00000000358	smg6	100	48.642	ENSSTOG00000028127	SMG6	100	48.074	Ictidomys_tridecemlineatus
ENSTRUG00000000358	smg6	61	52.008	ENSJJAG00000015367	Smg6	75	50.000	Jaculus_jaculus
ENSTRUG00000000358	smg6	98	66.555	ENSKMAG00000000279	smg6	94	66.688	Kryptolebias_marmoratus
ENSTRUG00000000358	smg6	96	74.116	ENSLBEG00000002184	smg6	95	69.444	Labrus_bergylta
ENSTRUG00000000358	smg6	73	64.706	ENSLOCG00000006448	smg6	100	56.543	Lepisosteus_oculatus
ENSTRUG00000000358	smg6	81	54.691	ENSLAFG00000001261	SMG6	83	54.495	Loxodonta_africana
ENSTRUG00000000358	smg6	100	47.982	ENSMFAG00000003394	SMG6	100	47.586	Macaca_fascicularis
ENSTRUG00000000358	smg6	100	48.738	ENSMMUG00000023161	SMG6	100	48.203	Macaca_mulatta
ENSTRUG00000000358	smg6	100	46.559	ENSMNEG00000044592	SMG6	100	46.492	Macaca_nemestrina
ENSTRUG00000000358	smg6	90	59.313	ENSMLEG00000029353	SMG6	99	59.677	Mandrillus_leucophaeus
ENSTRUG00000000358	smg6	97	74.792	ENSMAMG00000020119	smg6	97	71.000	Mastacembelus_armatus
ENSTRUG00000000358	smg6	98	68.952	ENSMZEG00005024736	smg6	90	70.020	Maylandia_zebra
ENSTRUG00000000358	smg6	56	54.089	ENSMGAG00000005401	-	76	53.801	Meleagris_gallopavo
ENSTRUG00000000358	smg6	100	48.582	ENSMICG00000012913	SMG6	100	48.274	Microcebus_murinus
ENSTRUG00000000358	smg6	98	72.614	ENSMMOG00000010883	smg6	93	73.156	Mola_mola
ENSTRUG00000000358	smg6	100	49.578	ENSMODG00000010622	SMG6	100	49.415	Monodelphis_domestica
ENSTRUG00000000358	smg6	97	74.116	ENSMALG00000001106	smg6	90	69.661	Monopterus_albus
ENSTRUG00000000358	smg6	81	55.214	MGP_CAROLIEiJ_G0016729	Smg6	98	63.395	Mus_caroli
ENSTRUG00000000358	smg6	81	54.661	ENSMUSG00000038290	Smg6	97	63.130	Mus_musculus
ENSTRUG00000000358	smg6	81	54.247	MGP_PahariEiJ_G0017866	Smg6	92	68.373	Mus_pahari
ENSTRUG00000000358	smg6	100	47.534	MGP_SPRETEiJ_G0017572	Smg6	98	62.865	Mus_spretus
ENSTRUG00000000358	smg6	81	55.591	ENSMPUG00000013046	SMG6	83	54.893	Mustela_putorius_furo
ENSTRUG00000000358	smg6	100	48.603	ENSMLUG00000005739	SMG6	100	48.098	Myotis_lucifugus
ENSTRUG00000000358	smg6	81	54.297	ENSNGAG00000007287	Smg6	88	57.273	Nannospalax_galili
ENSTRUG00000000358	smg6	100	69.626	ENSNBRG00000009511	smg6	100	70.753	Neolamprologus_brichardi
ENSTRUG00000000358	smg6	95	49.389	ENSNLEG00000017171	SMG6	100	58.835	Nomascus_leucogenys
ENSTRUG00000000358	smg6	81	54.567	ENSMEUG00000015804	SMG6	85	54.283	Notamacropus_eugenii
ENSTRUG00000000358	smg6	56	62.032	ENSOPRG00000000579	SMG6	81	58.768	Ochotona_princeps
ENSTRUG00000000358	smg6	77	59.309	ENSODEG00000008038	SMG6	82	59.613	Octodon_degus
ENSTRUG00000000358	smg6	98	69.241	ENSONIG00000005594	smg6	100	67.153	Oreochromis_niloticus
ENSTRUG00000000358	smg6	100	48.612	ENSOCUG00000013018	SMG6	100	48.426	Oryctolagus_cuniculus
ENSTRUG00000000358	smg6	98	64.058	ENSORLG00000003317	smg6	91	63.314	Oryzias_latipes
ENSTRUG00000000358	smg6	98	64.162	ENSORLG00020015343	smg6	91	63.043	Oryzias_latipes_hni
ENSTRUG00000000358	smg6	98	64.101	ENSORLG00015020454	smg6	90	64.120	Oryzias_latipes_hsok
ENSTRUG00000000358	smg6	98	64.003	ENSOMEG00000010838	smg6	91	63.957	Oryzias_melastigma
ENSTRUG00000000358	smg6	81	55.556	ENSOGAG00000004483	SMG6	100	48.398	Otolemur_garnettii
ENSTRUG00000000358	smg6	81	55.751	ENSOARG00000015076	SMG6	85	55.211	Ovis_aries
ENSTRUG00000000358	smg6	100	48.003	ENSPPAG00000043296	SMG6	100	47.954	Pan_paniscus
ENSTRUG00000000358	smg6	81	55.288	ENSPPRG00000014581	SMG6	83	55.290	Panthera_pardus
ENSTRUG00000000358	smg6	81	55.288	ENSPTIG00000008925	SMG6	100	58.835	Panthera_tigris_altaica
ENSTRUG00000000358	smg6	100	48.196	ENSPTRG00000008544	SMG6	100	58.835	Pan_troglodytes
ENSTRUG00000000358	smg6	100	47.982	ENSPANG00000024588	SMG6	100	47.903	Papio_anubis
ENSTRUG00000000358	smg6	78	50.924	ENSPSIG00000006660	SMG6	85	51.055	Pelodiscus_sinensis
ENSTRUG00000000358	smg6	92	79.494	ENSPMGG00000000844	smg6	91	79.248	Periophthalmus_magnuspinnatus
ENSTRUG00000000358	smg6	81	55.253	ENSPEMG00000020707	Smg6	100	48.420	Peromyscus_maniculatus_bairdii
ENSTRUG00000000358	smg6	98	65.798	ENSPFOG00000012035	smg6	100	64.224	Poecilia_formosa
ENSTRUG00000000358	smg6	98	65.464	ENSPLAG00000017660	smg6	93	64.687	Poecilia_latipinna
ENSTRUG00000000358	smg6	98	66.667	ENSPMEG00000000258	smg6	93	64.816	Poecilia_mexicana
ENSTRUG00000000358	smg6	98	64.568	ENSPREG00000010066	smg6	92	65.494	Poecilia_reticulata
ENSTRUG00000000358	smg6	100	44.722	ENSPPYG00000007790	SMG6	100	44.685	Pongo_abelii
ENSTRUG00000000358	smg6	100	46.370	ENSPCAG00000000552	SMG6	100	46.109	Procavia_capensis
ENSTRUG00000000358	smg6	81	55.109	ENSPCOG00000020925	SMG6	83	54.639	Propithecus_coquereli
ENSTRUG00000000358	smg6	81	51.613	ENSPVAG00000002159	SMG6	83	51.288	Pteropus_vampyrus
ENSTRUG00000000358	smg6	100	69.493	ENSPNYG00000024151	smg6	100	70.553	Pundamilia_nyererei
ENSTRUG00000000358	smg6	81	61.066	ENSPNAG00000015480	smg6	100	52.949	Pygocentrus_nattereri
ENSTRUG00000000358	smg6	100	48.069	ENSRNOG00000003041	Smg6	97	63.660	Rattus_norvegicus
ENSTRUG00000000358	smg6	81	55.422	ENSRBIG00000024746	SMG6	83	54.654	Rhinopithecus_bieti
ENSTRUG00000000358	smg6	81	55.422	ENSRROG00000030423	SMG6	100	59.023	Rhinopithecus_roxellana
ENSTRUG00000000358	smg6	100	49.157	ENSSBOG00000022518	SMG6	100	47.776	Saimiri_boliviensis_boliviensis
ENSTRUG00000000358	smg6	81	55.255	ENSSHAG00000010045	SMG6	83	54.777	Sarcophilus_harrisii
ENSTRUG00000000358	smg6	98	54.334	ENSSFOG00015005436	smg6	87	55.491	Scleropages_formosus
ENSTRUG00000000358	smg6	98	69.727	ENSSMAG00000019777	smg6	92	69.374	Scophthalmus_maximus
ENSTRUG00000000358	smg6	99	78.125	ENSSDUG00000016412	smg6	95	78.125	Seriola_dumerili
ENSTRUG00000000358	smg6	95	71.899	ENSSLDG00000020747	smg6	97	69.231	Seriola_lalandi_dorsalis
ENSTRUG00000000358	smg6	99	47.693	ENSSPUG00000007152	SMG6	97	48.974	Sphenodon_punctatus
ENSTRUG00000000358	smg6	99	81.250	ENSSPAG00000015633	smg6	94	81.250	Stegastes_partitus
ENSTRUG00000000358	smg6	81	55.932	ENSSSCG00000017826	SMG6	83	55.360	Sus_scrofa
ENSTRUG00000000358	smg6	100	48.840	ENSTGUG00000005836	SMG6	100	48.614	Taeniopygia_guttata
ENSTRUG00000000358	smg6	100	77.315	ENSTNIG00000016164	smg6	100	77.785	Tetraodon_nigroviridis
ENSTRUG00000000358	smg6	81	52.818	ENSTBEG00000011424	SMG6	83	52.240	Tupaia_belangeri
ENSTRUG00000000358	smg6	77	56.477	ENSTTRG00000001175	SMG6	79	56.831	Tursiops_truncatus
ENSTRUG00000000358	smg6	81	55.087	ENSUAMG00000025152	SMG6	85	54.675	Ursus_americanus
ENSTRUG00000000358	smg6	81	55.297	ENSUMAG00000009306	SMG6	85	55.044	Ursus_maritimus
ENSTRUG00000000358	smg6	70	95.833	ENSVPAG00000000225	SMG6	75	95.833	Vicugna_pacos
ENSTRUG00000000358	smg6	81	56.440	ENSVVUG00000021727	SMG6	84	55.951	Vulpes_vulpes
ENSTRUG00000000358	smg6	72	54.396	ENSXETG00000023799	SMG6	99	46.353	Xenopus_tropicalis
ENSTRUG00000000358	smg6	98	65.477	ENSXCOG00000009867	smg6	92	65.214	Xiphophorus_couchianus
ENSTRUG00000000358	smg6	98	64.443	ENSXMAG00000010321	smg6	93	63.776	Xiphophorus_maculatus