EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000000673 (Gene tree)
Gene ID: 101070509
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 5513 bases
Position: chr5:12030382-12035894
Accession: 101070509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000001608	Btz	PF09405.10	7.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000001616	-	3601	XM_011604354	ENSTRUP00000001608	739 (aa)	XP_011602656	H2RN95

Gene Model

Click here to download ENSTRUG00000000673's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000000673's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000000673	casc3	95	62.888	ENSAPOG00000008467	casc3	96	68.407	Acanthochromis_polyacanthus
ENSTRUG00000000673	casc3	95	66.396	ENSAOCG00000016676	casc3	96	69.137	Amphiprion_ocellaris
ENSTRUG00000000673	casc3	95	66.621	ENSAPEG00000006787	casc3	96	69.377	Amphiprion_percula
ENSTRUG00000000673	casc3	95	68.054	ENSATEG00000017196	casc3	96	69.612	Anabas_testudineus
ENSTRUG00000000673	casc3	60	59.242	ENSANAG00000031954	-	84	60.664	Aotus_nancymaae
ENSTRUG00000000673	casc3	74	51.282	ENSANAG00000034820	-	88	50.147	Aotus_nancymaae
ENSTRUG00000000673	casc3	95	67.896	ENSACLG00000016198	casc3	96	69.906	Astatotilapia_calliptera
ENSTRUG00000000673	casc3	99	56.433	ENSAMXG00000032452	casc3	94	56.458	Astyanax_mexicanus
ENSTRUG00000000673	casc3	99	43.822	ENSCJAG00000016032	CASC3	89	44.944	Callithrix_jacchus
ENSTRUG00000000673	casc3	76	51.815	ENSCAFG00020018882	CASC3	80	55.263	Canis_lupus_dingo
ENSTRUG00000000673	casc3	99	43.567	ENSCHIG00000006338	CASC3	89	45.134	Capra_hircus
ENSTRUG00000000673	casc3	71	51.780	ENSCAPG00000010514	CASC3	51	52.698	Cavia_aperea
ENSTRUG00000000673	casc3	99	43.456	ENSCCAG00000033620	CASC3	89	45.658	Cebus_capucinus
ENSTRUG00000000673	casc3	100	64.573	ENSCSEG00000010047	casc3	96	64.567	Cynoglossus_semilaevis
ENSTRUG00000000673	casc3	95	66.852	ENSCVAG00000014935	casc3	96	68.094	Cyprinodon_variegatus
ENSTRUG00000000673	casc3	99	54.086	ENSDARG00000029911	casc3	94	54.105	Danio_rerio
ENSTRUG00000000673	casc3	75	39.236	ENSEBUG00000010654	casc3	76	39.344	Eptatretus_burgeri
ENSTRUG00000000673	casc3	80	52.769	ENSEASG00005002909	CASC3	80	55.187	Equus_asinus_asinus
ENSTRUG00000000673	casc3	100	55.019	ENSELUG00000015093	casc3	95	54.522	Esox_lucius
ENSTRUG00000000673	casc3	95	65.655	ENSFHEG00000015793	casc3	96	66.529	Fundulus_heteroclitus
ENSTRUG00000000673	casc3	94	62.687	ENSGAFG00000017148	casc3	83	65.583	Gambusia_affinis
ENSTRUG00000000673	casc3	68	52.074	ENSGAGG00000008432	CASC3	86	52.134	Gopherus_agassizii
ENSTRUG00000000673	casc3	95	67.984	ENSHBUG00000013155	casc3	96	69.906	Haplochromis_burtoni
ENSTRUG00000000673	casc3	100	61.307	ENSHCOG00000002664	casc3	96	60.982	Hippocampus_comes
ENSTRUG00000000673	casc3	92	65.989	ENSKMAG00000019507	casc3	99	67.209	Kryptolebias_marmoratus
ENSTRUG00000000673	casc3	95	65.045	ENSLBEG00000005435	casc3	96	65.645	Labrus_bergylta
ENSTRUG00000000673	casc3	99	48.172	ENSLOCG00000013518	casc3	91	49.250	Lepisosteus_oculatus
ENSTRUG00000000673	casc3	76	52.145	ENSMFAG00000041496	CASC3	80	55.507	Macaca_fascicularis
ENSTRUG00000000673	casc3	95	65.462	ENSMAMG00000005235	casc3	96	67.470	Mastacembelus_armatus
ENSTRUG00000000673	casc3	95	67.896	ENSMZEG00005003815	casc3	96	69.906	Maylandia_zebra
ENSTRUG00000000673	casc3	89	43.003	ENSMGAG00000013247	CASC3	50	53.185	Meleagris_gallopavo
ENSTRUG00000000673	casc3	100	67.784	ENSMMOG00000014339	casc3	96	68.022	Mola_mola
ENSTRUG00000000673	casc3	72	52.787	ENSMODG00000013044	CASC3	63	59.596	Monodelphis_domestica
ENSTRUG00000000673	casc3	58	93.000	ENSMALG00000019771	casc3	84	84.553	Monopterus_albus
ENSTRUG00000000673	casc3	84	53.312	ENSMUSG00000078676	Casc3	73	57.080	Mus_musculus
ENSTRUG00000000673	casc3	76	52.997	MGP_SPRETEiJ_G0017943	Casc3	72	57.080	Mus_spretus
ENSTRUG00000000673	casc3	59	62.676	ENSMEUG00000015662	CASC3	67	46.847	Notamacropus_eugenii
ENSTRUG00000000673	casc3	95	67.391	ENSONIG00000009337	casc3	96	68.952	Oreochromis_niloticus
ENSTRUG00000000673	casc3	95	63.662	ENSORLG00000023125	casc3	96	65.235	Oryzias_latipes
ENSTRUG00000000673	casc3	99	52.658	ENSPKIG00000023186	casc3	92	52.732	Paramormyrops_kingsleyae
ENSTRUG00000000673	casc3	95	61.277	ENSPFOG00000017632	casc3	96	66.135	Poecilia_formosa
ENSTRUG00000000673	casc3	95	64.706	ENSPLAG00000005268	casc3	96	66.846	Poecilia_latipinna
ENSTRUG00000000673	casc3	51	81.250	ENSPMEG00000010299	casc3	67	83.704	Poecilia_mexicana
ENSTRUG00000000673	casc3	78	66.882	ENSPREG00000011856	casc3	91	68.780	Poecilia_reticulata
ENSTRUG00000000673	casc3	76	51.155	ENSPVAG00000008556	CASC3	74	57.269	Pteropus_vampyrus
ENSTRUG00000000673	casc3	95	67.896	ENSPNYG00000011962	casc3	96	69.906	Pundamilia_nyererei
ENSTRUG00000000673	casc3	99	55.928	ENSPNAG00000015928	casc3	94	55.393	Pygocentrus_nattereri
ENSTRUG00000000673	casc3	77	52.516	ENSRNOG00000009716	Casc3	80	56.637	Rattus_norvegicus
ENSTRUG00000000673	casc3	70	53.165	ENSSHAG00000013338	CASC3	83	54.054	Sarcophilus_harrisii
ENSTRUG00000000673	casc3	81	69.921	ENSSMAG00000016096	casc3	96	66.449	Scophthalmus_maximus
ENSTRUG00000000673	casc3	95	67.292	ENSSDUG00000016893	casc3	91	68.984	Seriola_dumerili
ENSTRUG00000000673	casc3	77	72.766	ENSSLDG00000020308	casc3	92	74.118	Seriola_lalandi_dorsalis
ENSTRUG00000000673	casc3	51	57.732	ENSSARG00000010378	CASC3	62	65.753	Sorex_araneus
ENSTRUG00000000673	casc3	95	65.952	ENSSPAG00000023008	casc3	96	67.867	Stegastes_partitus
ENSTRUG00000000673	casc3	91	45.429	ENSSSCG00000017477	CASC3	51	51.351	Sus_scrofa
ENSTRUG00000000673	casc3	52	64.356	ENSTGUG00000002300	CASC3	58	52.215	Taeniopygia_guttata
ENSTRUG00000000673	casc3	100	72.259	ENSTNIG00000003208	casc3	56	79.016	Tetraodon_nigroviridis
ENSTRUG00000000673	casc3	60	60.488	ENSTBEG00000017459	CASC3	57	61.951	Tupaia_belangeri
ENSTRUG00000000673	casc3	50	59.184	ENSTTRG00000016896	CASC3	65	70.423	Tursiops_truncatus
ENSTRUG00000000673	casc3	76	51.447	ENSUAMG00000015116	CASC3	80	55.702	Ursus_americanus
ENSTRUG00000000673	casc3	60	60.241	ENSUMAG00000017697	CASC3	85	64.789	Ursus_maritimus
ENSTRUG00000000673	casc3	95	64.447	ENSXMAG00000013937	casc3	96	66.889	Xiphophorus_maculatus