EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000000736 (Gene tree)
Gene ID: 100190941
Gene Symbol: smn
Alias: -
Full Name: survival motor neuron
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3897 bases
Position: chr21:14779658-14783554
Accession: 100190941
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000001768	SMN	PF06003.12	1.2e-103	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000001776	-	2739	-	ENSTRUP00000001768	278 (aa)	-	H2RNQ5

Gene Model

Click here to download ENSTRUG00000000736's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000000736's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000000736	smn	95	49.254	ENSG00000205571	SMN2	91	48.507	Homo_sapiens
ENSTRUG00000000736	smn	95	49.254	ENSG00000172062	SMN1	91	48.507	Homo_sapiens
ENSTRUG00000000736	smn	100	67.845	ENSAPOG00000011324	smn1	100	67.491	Acanthochromis_polyacanthus
ENSTRUG00000000736	smn	95	48.352	ENSAMEG00000003316	-	89	47.584	Ailuropoda_melanoleuca
ENSTRUG00000000736	smn	60	70.833	ENSACIG00000007598	smn1	83	74.324	Amphilophus_citrinellus
ENSTRUG00000000736	smn	93	68.061	ENSACIG00000019772	-	99	65.779	Amphilophus_citrinellus
ENSTRUG00000000736	smn	100	68.198	ENSAOCG00000024444	smn1	100	67.845	Amphiprion_ocellaris
ENSTRUG00000000736	smn	100	68.905	ENSAPEG00000016504	smn1	100	68.551	Amphiprion_percula
ENSTRUG00000000736	smn	94	71.053	ENSATEG00000002182	smn1	81	66.917	Anabas_testudineus
ENSTRUG00000000736	smn	69	42.211	ENSAPLG00000010912	-	97	41.500	Anas_platyrhynchos
ENSTRUG00000000736	smn	99	48.772	ENSACAG00000010017	-	62	56.395	Anolis_carolinensis
ENSTRUG00000000736	smn	96	47.670	ENSANAG00000032133	-	90	37.079	Aotus_nancymaae
ENSTRUG00000000736	smn	98	69.818	ENSACLG00000007308	smn1	92	70.545	Astatotilapia_calliptera
ENSTRUG00000000736	smn	100	53.381	ENSAMXG00000013884	smn1	100	58.657	Astyanax_mexicanus
ENSTRUG00000000736	smn	96	47.350	ENSBTAG00000005743	SMN2	93	47.350	Bos_taurus
ENSTRUG00000000736	smn	95	49.254	ENSCJAG00000016290	-	91	48.689	Callithrix_jacchus
ENSTRUG00000000736	smn	95	48.201	ENSCAFG00000007812	SMN	93	47.584	Canis_familiaris
ENSTRUG00000000736	smn	95	48.375	ENSCAFG00020019229	-	87	47.584	Canis_lupus_dingo
ENSTRUG00000000736	smn	95	48.014	ENSCHIG00000015559	-	56	54.819	Capra_hircus
ENSTRUG00000000736	smn	95	49.254	ENSTSYG00000012058	-	93	48.507	Carlito_syrichta
ENSTRUG00000000736	smn	73	43.961	ENSCAPG00000011021	-	94	39.819	Cavia_aperea
ENSTRUG00000000736	smn	96	45.487	ENSCPOG00000036973	-	92	48.214	Cavia_porcellus
ENSTRUG00000000736	smn	96	44.681	ENSCPOG00000012328	-	93	46.809	Cavia_porcellus
ENSTRUG00000000736	smn	95	48.551	ENSCCAG00000018127	-	92	47.955	Cebus_capucinus
ENSTRUG00000000736	smn	95	48.881	ENSCATG00000037002	-	91	48.134	Cercocebus_atys
ENSTRUG00000000736	smn	94	46.715	ENSCLAG00000000284	-	90	46.494	Chinchilla_lanigera
ENSTRUG00000000736	smn	95	48.736	ENSCSAG00000015688	-	51	59.603	Chlorocebus_sabaeus
ENSTRUG00000000736	smn	59	55.152	ENSCHOG00000007346	-	61	57.237	Choloepus_hoffmanni
ENSTRUG00000000736	smn	98	48.780	ENSCPBG00000010968	-	99	48.162	Chrysemys_picta_bellii
ENSTRUG00000000736	smn	99	45.614	ENSCANG00000033324	-	91	43.561	Colobus_angolensis_palliatus
ENSTRUG00000000736	smn	95	49.091	ENSCANG00000038242	-	95	50.370	Colobus_angolensis_palliatus
ENSTRUG00000000736	smn	95	48.507	ENSCGRG00001017959	-	93	47.619	Cricetulus_griseus_chok1gshd
ENSTRUG00000000736	smn	96	36.940	ENSCGRG00001016998	-	50	34.969	Cricetulus_griseus_chok1gshd
ENSTRUG00000000736	smn	95	48.507	ENSCGRG00000007698	Smn1	93	47.619	Cricetulus_griseus_crigri
ENSTRUG00000000736	smn	97	60.490	ENSCSEG00000015227	smn1	100	59.649	Cynoglossus_semilaevis
ENSTRUG00000000736	smn	100	66.197	ENSCVAG00000007498	smn1	100	63.732	Cyprinodon_variegatus
ENSTRUG00000000736	smn	100	56.491	ENSDARG00000018494	smn1	100	55.749	Danio_rerio
ENSTRUG00000000736	smn	76	45.755	ENSDNOG00000045949	-	56	59.690	Dasypus_novemcinctus
ENSTRUG00000000736	smn	96	37.638	ENSDORG00000007082	Smn1	53	43.949	Dipodomys_ordii
ENSTRUG00000000736	smn	61	46.243	ENSETEG00000001406	-	78	50.311	Echinops_telfairi
ENSTRUG00000000736	smn	95	49.091	ENSECAG00000015215	-	51	60.544	Equus_caballus
ENSTRUG00000000736	smn	88	48.425	ENSEEUG00000015777	-	100	46.429	Erinaceus_europaeus
ENSTRUG00000000736	smn	97	61.455	ENSELUG00000018067	smn1	97	57.143	Esox_lucius
ENSTRUG00000000736	smn	95	47.080	ENSFCAG00000028292	SMN	92	47.426	Felis_catus
ENSTRUG00000000736	smn	95	51.103	ENSFALG00000012320	-	55	59.333	Ficedula_albicollis
ENSTRUG00000000736	smn	96	44.681	ENSFDAG00000017683	-	92	46.367	Fukomys_damarensis
ENSTRUG00000000736	smn	97	68.116	ENSFHEG00000018508	smn1	100	66.667	Fundulus_heteroclitus
ENSTRUG00000000736	smn	100	60.854	ENSGMOG00000017279	smn1	98	57.857	Gadus_morhua
ENSTRUG00000000736	smn	95	54.074	ENSGALG00000002430	SMN	57	61.039	Gallus_gallus
ENSTRUG00000000736	smn	100	68.198	ENSGAFG00000009501	smn1	100	65.724	Gambusia_affinis
ENSTRUG00000000736	smn	100	66.312	ENSGACG00000010584	smn1	97	67.021	Gasterosteus_aculeatus
ENSTRUG00000000736	smn	96	36.719	ENSGAGG00000013639	-	91	39.062	Gopherus_agassizii
ENSTRUG00000000736	smn	98	50.903	ENSGAGG00000011374	-	97	49.470	Gopherus_agassizii
ENSTRUG00000000736	smn	63	55.056	ENSGGOG00000026704	-	76	56.707	Gorilla_gorilla
ENSTRUG00000000736	smn	92	50.000	ENSGGOG00000003872	-	94	49.042	Gorilla_gorilla
ENSTRUG00000000736	smn	100	70.922	ENSHBUG00000013987	smn1	100	71.631	Haplochromis_burtoni
ENSTRUG00000000736	smn	96	46.715	ENSHGLG00000001905	-	51	54.000	Heterocephalus_glaber_female
ENSTRUG00000000736	smn	96	44.891	ENSHGLG00000001018	-	92	45.423	Heterocephalus_glaber_female
ENSTRUG00000000736	smn	94	47.388	ENSHGLG00100018676	-	53	54.000	Heterocephalus_glaber_male
ENSTRUG00000000736	smn	96	44.891	ENSHGLG00100011252	-	92	45.423	Heterocephalus_glaber_male
ENSTRUG00000000736	smn	94	67.424	ENSHCOG00000017136	smn1	89	66.288	Hippocampus_comes
ENSTRUG00000000736	smn	100	58.596	ENSIPUG00000012580	smn1	86	57.762	Ictalurus_punctatus
ENSTRUG00000000736	smn	92	47.925	ENSSTOG00000012288	-	60	53.801	Ictidomys_tridecemlineatus
ENSTRUG00000000736	smn	60	46.988	ENSJJAG00000014853	-	81	48.125	Jaculus_jaculus
ENSTRUG00000000736	smn	100	66.783	ENSKMAG00000007239	smn1	100	62.766	Kryptolebias_marmoratus
ENSTRUG00000000736	smn	100	69.718	ENSLBEG00000022550	smn1	100	67.254	Labrus_bergylta
ENSTRUG00000000736	smn	98	36.027	ENSLACG00000009808	-	93	33.922	Latimeria_chalumnae
ENSTRUG00000000736	smn	100	51.049	ENSLOCG00000011339	smn1	100	50.699	Lepisosteus_oculatus
ENSTRUG00000000736	smn	96	46.786	ENSLAFG00000003425	-	99	38.728	Loxodonta_africana
ENSTRUG00000000736	smn	95	45.848	ENSMFAG00000008812	-	54	53.750	Macaca_fascicularis
ENSTRUG00000000736	smn	95	49.627	ENSMFAG00000031523	SMN1	91	48.881	Macaca_fascicularis
ENSTRUG00000000736	smn	95	45.126	ENSMMUG00000030594	-	54	51.852	Macaca_mulatta
ENSTRUG00000000736	smn	95	49.627	ENSMMUG00000020214	SMN1	91	48.881	Macaca_mulatta
ENSTRUG00000000736	smn	95	49.627	ENSMNEG00000035094	-	91	48.881	Macaca_nemestrina
ENSTRUG00000000736	smn	95	49.813	ENSMLEG00000041902	-	91	49.064	Mandrillus_leucophaeus
ENSTRUG00000000736	smn	100	69.366	ENSMAMG00000011034	smn1	100	68.310	Mastacembelus_armatus
ENSTRUG00000000736	smn	100	71.277	ENSMZEG00005013634	smn1	100	71.986	Maylandia_zebra
ENSTRUG00000000736	smn	95	47.761	ENSMAUG00000010262	Smn1	93	47.253	Mesocricetus_auratus
ENSTRUG00000000736	smn	63	55.932	ENSMICG00000034708	-	75	55.952	Microcebus_murinus
ENSTRUG00000000736	smn	95	49.442	ENSMOCG00000017833	Smn1	93	47.253	Microtus_ochrogaster
ENSTRUG00000000736	smn	96	67.658	ENSMMOG00000005504	smn1	97	67.658	Mola_mola
ENSTRUG00000000736	smn	96	46.316	ENSMODG00000001436	-	92	48.540	Monodelphis_domestica
ENSTRUG00000000736	smn	100	72.887	ENSMALG00000008025	smn1	100	69.014	Monopterus_albus
ENSTRUG00000000736	smn	95	48.540	MGP_CAROLIEiJ_G0018836	Smn1	55	53.939	Mus_caroli
ENSTRUG00000000736	smn	95	48.175	ENSMUSG00000021645	Smn1	55	53.939	Mus_musculus
ENSTRUG00000000736	smn	96	47.212	MGP_PahariEiJ_G0015911	Smn1	56	52.121	Mus_pahari
ENSTRUG00000000736	smn	95	48.175	MGP_SPRETEiJ_G0019718	Smn1	55	53.939	Mus_spretus
ENSTRUG00000000736	smn	94	47.059	ENSMPUG00000014470	-	57	56.875	Mustela_putorius_furo
ENSTRUG00000000736	smn	95	46.763	ENSMLUG00000010603	-	53	55.152	Myotis_lucifugus
ENSTRUG00000000736	smn	96	46.520	ENSNGAG00000019833	Smn1	58	50.289	Nannospalax_galili
ENSTRUG00000000736	smn	100	73.498	ENSNBRG00000023000	smn1	100	70.213	Neolamprologus_brichardi
ENSTRUG00000000736	smn	96	48.921	ENSNLEG00000004454	-	91	48.507	Nomascus_leucogenys
ENSTRUG00000000736	smn	65	39.899	ENSMEUG00000011393	-	88	44.608	Notamacropus_eugenii
ENSTRUG00000000736	smn	88	46.923	ENSOPRG00000002015	-	100	48.872	Ochotona_princeps
ENSTRUG00000000736	smn	91	46.768	ENSODEG00000015976	-	92	46.154	Octodon_degus
ENSTRUG00000000736	smn	100	73.498	ENSONIG00000011799	smn1	100	70.213	Oreochromis_niloticus
ENSTRUG00000000736	smn	94	49.281	ENSOANG00000001626	-	94	49.630	Ornithorhynchus_anatinus
ENSTRUG00000000736	smn	95	48.872	ENSOCUG00000017097	-	92	46.545	Oryctolagus_cuniculus
ENSTRUG00000000736	smn	95	46.324	ENSOCUG00000026649	-	58	54.167	Oryctolagus_cuniculus
ENSTRUG00000000736	smn	100	63.604	ENSORLG00000010552	smn1	100	65.724	Oryzias_latipes
ENSTRUG00000000736	smn	100	61.484	ENSORLG00020007936	smn1	100	61.484	Oryzias_latipes_hni
ENSTRUG00000000736	smn	100	63.251	ENSORLG00015022425	smn1	100	65.371	Oryzias_latipes_hsok
ENSTRUG00000000736	smn	100	65.018	ENSOMEG00000007824	smn1	100	67.138	Oryzias_melastigma
ENSTRUG00000000736	smn	92	43.223	ENSOGAG00000031414	-	55	52.174	Otolemur_garnettii
ENSTRUG00000000736	smn	94	46.691	ENSOARG00000005425	-	59	53.416	Ovis_aries
ENSTRUG00000000736	smn	95	49.254	ENSPPAG00000036640	-	91	48.507	Pan_paniscus
ENSTRUG00000000736	smn	95	46.992	ENSPPRG00000005575	-	92	47.794	Panthera_pardus
ENSTRUG00000000736	smn	95	47.636	ENSPTIG00000007745	-	92	47.794	Panthera_tigris_altaica
ENSTRUG00000000736	smn	95	49.254	ENSPTRG00000016955	-	91	48.507	Pan_troglodytes
ENSTRUG00000000736	smn	95	49.627	ENSPANG00000013601	-	91	48.881	Papio_anubis
ENSTRUG00000000736	smn	95	47.388	ENSPANG00000000253	-	91	47.566	Papio_anubis
ENSTRUG00000000736	smn	100	54.296	ENSPKIG00000011096	smn1	100	53.873	Paramormyrops_kingsleyae
ENSTRUG00000000736	smn	94	48.913	ENSPSIG00000014787	-	86	47.619	Pelodiscus_sinensis
ENSTRUG00000000736	smn	100	59.507	ENSPMGG00000012285	smn1	100	58.099	Periophthalmus_magnuspinnatus
ENSTRUG00000000736	smn	96	45.070	ENSPCIG00000025764	-	94	49.270	Phascolarctos_cinereus
ENSTRUG00000000736	smn	100	68.198	ENSPFOG00000007786	smn1	100	65.724	Poecilia_formosa
ENSTRUG00000000736	smn	100	68.551	ENSPLAG00000012071	smn1	100	66.078	Poecilia_latipinna
ENSTRUG00000000736	smn	100	68.198	ENSPMEG00000017085	smn1	100	65.724	Poecilia_mexicana
ENSTRUG00000000736	smn	100	68.551	ENSPREG00000005824	smn1	100	66.078	Poecilia_reticulata
ENSTRUG00000000736	smn	92	47.940	ENSPPYG00000015533	-	51	57.447	Pongo_abelii
ENSTRUG00000000736	smn	88	38.367	ENSPPYG00000019189	-	91	71.429	Pongo_abelii
ENSTRUG00000000736	smn	91	45.149	ENSPCAG00000004187	-	97	44.569	Procavia_capensis
ENSTRUG00000000736	smn	62	50.877	ENSPCOG00000022307	-	64	57.447	Propithecus_coquereli
ENSTRUG00000000736	smn	95	46.886	ENSPVAG00000005977	-	54	59.119	Pteropus_vampyrus
ENSTRUG00000000736	smn	100	73.498	ENSPNYG00000014148	smn1	100	70.213	Pundamilia_nyererei
ENSTRUG00000000736	smn	100	58.803	ENSPNAG00000014007	smn1	87	57.244	Pygocentrus_nattereri
ENSTRUG00000000736	smn	95	45.985	ENSRNOG00000018067	Smn1	93	45.788	Rattus_norvegicus
ENSTRUG00000000736	smn	99	44.912	ENSRBIG00000036775	-	95	47.101	Rhinopithecus_bieti
ENSTRUG00000000736	smn	96	48.214	ENSRBIG00000037052	-	92	47.970	Rhinopithecus_bieti
ENSTRUG00000000736	smn	96	45.956	ENSRROG00000031088	-	59	58.940	Rhinopithecus_roxellana
ENSTRUG00000000736	smn	96	48.214	ENSRROG00000039399	-	92	47.970	Rhinopithecus_roxellana
ENSTRUG00000000736	smn	95	49.270	ENSSBOG00000011665	-	91	48.315	Saimiri_boliviensis_boliviensis
ENSTRUG00000000736	smn	96	45.583	ENSSHAG00000001499	-	97	47.407	Sarcophilus_harrisii
ENSTRUG00000000736	smn	100	56.584	ENSSFOG00015015507	smn1	100	52.669	Scleropages_formosus
ENSTRUG00000000736	smn	100	66.312	ENSSMAG00000007922	smn1	100	68.551	Scophthalmus_maximus
ENSTRUG00000000736	smn	100	74.296	ENSSDUG00000018533	smn1	100	71.831	Seriola_dumerili
ENSTRUG00000000736	smn	100	74.648	ENSSLDG00000021135	smn1	100	72.183	Seriola_lalandi_dorsalis
ENSTRUG00000000736	smn	97	49.296	ENSSPUG00000000373	-	96	51.254	Sphenodon_punctatus
ENSTRUG00000000736	smn	100	71.378	ENSSPAG00000004345	smn1	100	69.611	Stegastes_partitus
ENSTRUG00000000736	smn	56	58.824	ENSSSCG00000029127	-	69	62.500	Sus_scrofa
ENSTRUG00000000736	smn	95	48.905	ENSSSCG00000016970	-	57	57.485	Sus_scrofa
ENSTRUG00000000736	smn	92	46.377	ENSTGUG00000001548	-	96	46.840	Taeniopygia_guttata
ENSTRUG00000000736	smn	99	74.296	ENSTNIG00000009892	smn1	98	74.648	Tetraodon_nigroviridis
ENSTRUG00000000736	smn	63	53.591	ENSTBEG00000002399	-	80	56.364	Tupaia_belangeri
ENSTRUG00000000736	smn	95	48.327	ENSTTRG00000005080	-	57	55.152	Tursiops_truncatus
ENSTRUG00000000736	smn	63	53.714	ENSUAMG00000024947	-	60	57.576	Ursus_americanus
ENSTRUG00000000736	smn	63	53.714	ENSUMAG00000007842	-	69	47.584	Ursus_maritimus
ENSTRUG00000000736	smn	63	76.000	ENSVPAG00000009887	-	63	73.333	Vicugna_pacos
ENSTRUG00000000736	smn	95	48.201	ENSVVUG00000006934	-	93	47.584	Vulpes_vulpes
ENSTRUG00000000736	smn	98	53.333	ENSXETG00000018189	smn2	95	49.291	Xenopus_tropicalis
ENSTRUG00000000736	smn	100	67.845	ENSXMAG00000001521	smn1	100	65.371	Xiphophorus_maculatus